Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Kohulan/DECIMER-Image-Segmentation issues and pull requests
#111 - fix: Fixed error with np.bool
Pull Request -
State: closed - Opened by Kohulan 2 months ago
#110 - Fixed error with np.bool, updated version of decimer_segmentation in __init__.py, added model file to gitignore
Pull Request -
State: closed - Opened by alexey-krasnov 2 months ago
#109 - Issues with mrcnn parallel model
Issue -
State: open - Opened by cmc227 2 months ago
- 1 comment
Labels: wontfix
#108 - Development
Pull Request -
State: closed - Opened by Kohulan 8 months ago
#107 - On segmented images terminated atom groups or atoms are not included
Issue -
State: open - Opened by alexey-krasnov 8 months ago
- 4 comments
Labels: bug
#106 - My program got killed
Issue -
State: closed - Opened by shivanandakandagalla 10 months ago
- 2 comments
#105 - chore(master): release 1.4.0
Pull Request -
State: closed - Opened by Kohulan 10 months ago
- 1 comment
Labels: autorelease: tagged
#104 - Improved line detection and bigger kernel
Pull Request -
State: closed - Opened by OBrink 10 months ago
- 1 comment
Labels: enhancement
#103 - Improved line detection
Pull Request -
State: closed - Opened by OBrink 10 months ago
- 1 comment
Labels: enhancement
#102 - There is a question
Issue -
State: closed - Opened by pjc12345678 10 months ago
- 3 comments
Labels: question
#101 - chore(master): release 1.3.0
Pull Request -
State: closed - Opened by Kohulan 11 months ago
- 1 comment
Labels: autorelease: tagged
#100 - New model, new seed pixel determination, new expansion procedure
Pull Request -
State: closed - Opened by OBrink 11 months ago
- 1 comment
Labels: enhancement, dependencies
#99 - chore(master): release 1.2.5
Pull Request -
State: closed - Opened by Kohulan 12 months ago
- 1 comment
Labels: autorelease: tagged
#98 - Fix microservice paper bug
Pull Request -
State: closed - Opened by OBrink 12 months ago
#97 - chore(master): release 1.2.4
Pull Request -
State: closed - Opened by Kohulan 12 months ago
- 1 comment
Labels: autorelease: tagged
#96 - fix: expansion crash when no structures have been detected #95
Pull Request -
State: closed - Opened by OBrink 12 months ago
Labels: bug, enhancement
#95 - Segmentation error on page without structure
Issue -
State: closed - Opened by OBrink 12 months ago
Labels: bug
#94 - chore(master): release 1.2.3
Pull Request -
State: closed - Opened by Kohulan about 1 year ago
- 1 comment
Labels: autorelease: tagged
#93 - doc: version bump: 2.1.3
Pull Request -
State: closed - Opened by OBrink about 1 year ago
#92 - chore(master): release 1.2.2
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 2 comments
Labels: autorelease: tagged
#91 - chore(master): release 1.2.1
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#90 - doc: version bump: 1.2.1
Pull Request -
State: closed - Opened by OBrink about 1 year ago
#89 - doc: version bump: 1.2.1
Pull Request -
State: closed - Opened by OBrink about 1 year ago
#88 - fix: GH action for pypi releases
Pull Request -
State: closed - Opened by OBrink about 1 year ago
Labels: bug
#87 - feat: GH Action for automated Pypi releases
Pull Request -
State: closed - Opened by OBrink about 1 year ago
Labels: enhancement
#86 - chore(master): release 1.2.0
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#85 - fix: formatted with black and include release
Pull Request -
State: closed - Opened by Kohulan about 1 year ago
#84 - Adaptive exclusion mask line length definition
Pull Request -
State: closed - Opened by OBrink about 1 year ago
Labels: enhancement
#83 - version bump: 1.1.3 --> 1.1.4
Pull Request -
State: closed - Opened by OBrink about 1 year ago
#82 - fix: avoid crash during mask application
Pull Request -
State: closed - Opened by OBrink about 1 year ago
#81 - fix: fix broken test case
Pull Request -
State: closed - Opened by OBrink about 1 year ago
#80 - fix: smaller threshold for definition of long vertical or horizontal lines
Pull Request -
State: closed - Opened by OBrink about 1 year ago
Labels: enhancement
#79 - Development
Pull Request -
State: closed - Opened by Kohulan about 1 year ago
#78 - fix: handle failed mask center determination #63
Pull Request -
State: closed - Opened by OBrink about 1 year ago
Labels: bug
#77 - Horizontal vertical line exclusion
Pull Request -
State: closed - Opened by OBrink about 1 year ago
Labels: enhancement
#76 - Could you offer the dataset (and the code of training process)?
Issue -
State: closed - Opened by LingjieBao1998 about 1 year ago
- 2 comments
Labels: question
#75 - fix crash-inducing bug introduced with #72
Pull Request -
State: closed - Opened by OBrink about 1 year ago
Labels: bug
#74 - fix crash when no segments are detected (since #72)
Pull Request -
State: closed - Opened by OBrink about 1 year ago
Labels: bug
#73 - sync with drughutner extraction
Pull Request -
State: closed - Opened by deimos1078 about 1 year ago
#72 - top down, left right reading ordered segments
Pull Request -
State: closed - Opened by deimos1078 about 1 year ago
- 2 comments
#71 - sort the segments on each image
Pull Request -
State: closed - Opened by Iagea about 1 year ago
- 1 comment
#70 - Error with expanded mask function
Issue -
State: closed - Opened by Iagea over 1 year ago
- 5 comments
#69 - Poppler error also in Linux
Issue -
State: closed - Opened by Iagea over 1 year ago
- 1 comment
Labels: documentation, dependencies
#68 - Update docstrings
Pull Request -
State: closed - Opened by OBrink over 1 year ago
Labels: documentation
#67 - Cannot install DECIMER transformer and segmenter in same environment: tensorflow version different
Issue -
State: closed - Opened by ad-hardy over 1 year ago
- 2 comments
Labels: enhancement
#66 - Deprecation fixes
Pull Request -
State: closed - Opened by ad-hardy over 1 year ago
- 1 comment
#65 - Deprecated datatypes/args on new install of 1.1.1
Issue -
State: closed - Opened by ad-hardy over 1 year ago
- 3 comments
Labels: bug, help wanted
#64 - Bump tensorflow from 2.10.0 to 2.11.1
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies, python
#63 - Error with single page PDF at the get_mask_center function
Issue -
State: closed - Opened by Iagea almost 2 years ago
- 3 comments
Labels: bug
#62 - Could not load dynamic library 'libcudart.so.11.0'
Issue -
State: closed - Opened by Iagea almost 2 years ago
- 3 comments
Labels: question
#61 - Bump tensorflow from 2.10.0 to 2.10.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies, python
#60 - AttributeError: 'NoneType' object has no attribute 'dtype'
Issue -
State: closed - Opened by pythonnewbie3 almost 2 years ago
- 3 comments
Labels: question
#59 - Update to work with Tensorflow 2.10
Pull Request -
State: closed - Opened by OBrink almost 2 years ago
Labels: enhancement, python
#58 - Use pystow for storing model file in user directory
Issue -
State: closed - Opened by OBrink almost 2 years ago
- 2 comments
Labels: enhancement
#57 - Bump protobuf from 3.19.0 to 3.19.5
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies, python
#56 - can't detect structures and give correct segmentations in compact images
Issue -
State: closed - Opened by TheOnlylight about 2 years ago
- 1 comment
#55 - Dataset issues
Issue -
State: closed - Opened by Sbboss over 2 years ago
- 1 comment
#54 - Bump tensorflow from 2.3.0 to 2.7.2
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies, python
#53 - Need to downgrade protobuf following the installation
Issue -
State: closed - Opened by Iagea over 2 years ago
- 1 comment
Labels: bug, dependencies
#52 - Bump tensorflow from 2.3.0 to 2.6.4
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies, python
#51 - Can't reproduce the original results with the example page
Issue -
State: closed - Opened by OBrink over 2 years ago
- 4 comments
Labels: bug
#50 - added unit tests for mask expansion
Pull Request -
State: closed - Opened by zmahnoor14 over 2 years ago
#49 - Major code refactoring + Packaging
Pull Request -
State: closed - Opened by OBrink over 2 years ago
#48 - Bump minimist from 1.2.5 to 1.2.6 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 3 comments
Labels: dependencies, javascript
#47 - Bump lodash-es from 4.17.15 to 4.17.21 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 3 comments
Labels: dependencies, javascript
#46 - Notebook Example - Performance Not Replicable
Issue -
State: closed - Opened by Mblakey over 2 years ago
- 1 comment
#45 - Bump follow-redirects from 1.13.1 to 1.14.8 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 3 comments
Labels: dependencies, javascript
#44 - Bump protobuf from 3.14.0 to 3.15.0 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 3 comments
Labels: dependencies, python
#43 - Bump tensorflow from 2.3.0 to 2.5.3
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies, python
#42 - Bump tensorflow from 2.3.1 to 2.5.3 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 3 comments
Labels: dependencies, python
#41 - Bump tensorflow-gpu from 2.3.0 to 2.5.3
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies, python
#40 - Bump tensorflow-gpu from 2.3.0 to 2.5.3 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 3 comments
Labels: dependencies, python
#39 - Bump ipython from 7.19.0 to 7.31.1 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 3 comments
Labels: dependencies, python
#38 - Bump follow-redirects from 1.13.1 to 1.14.7 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies, javascript
#37 - Bump lxml from 4.6.3 to 4.6.5 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 3 comments
Labels: dependencies, python
#36 - How do I train the model with my own data and moldetect.py ?
Issue -
State: closed - Opened by stud2008 almost 3 years ago
- 1 comment
Labels: question, wontfix
#35 - Bump tensorflow-gpu from 2.3.0 to 2.5.2 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 1 comment
Labels: dependencies, python
#34 - Bump tensorflow-gpu from 2.3.0 to 2.5.2
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 1 comment
Labels: dependencies, python
#33 - Including molecule label in an output image
Issue -
State: closed - Opened by willfinnigan almost 3 years ago
- 2 comments
Labels: question
#32 - Bump sqlparse from 0.4.1 to 0.4.2 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies, python
#31 - Expand is too big. What can I modify?
Issue -
State: closed - Opened by rookiexiao123 about 3 years ago
- 2 comments
Labels: question
#30 - IndexError: index 0 is out of bounds for axis 0 with size 0
Issue -
State: closed - Opened by rookiexiao123 about 3 years ago
- 11 comments
Labels: question
#29 - Bump tensorflow from 2.3.0 to 2.5.1
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies, python
#28 - Bump tensorflow from 2.3.1 to 2.5.1 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies, python
#27 - Bump tensorflow-gpu from 2.3.0 to 2.5.1 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies, python
#26 - Bump tensorflow-gpu from 2.3.0 to 2.5.1
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies, python
#25 - Bump jszip from 3.5.0 to 3.7.0 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies, javascript
#24 - Bump tensorflow from 2.3.1 to 2.4.2 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies, python
#23 - Bump path-parse from 1.0.6 to 1.0.7 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies, javascript
#22 - My training loss looks very good, and the verification loss has been increasing from the beginning.
Issue -
State: closed - Opened by rookiexiao123 about 3 years ago
- 6 comments
Labels: question
#21 - Bump urllib3 from 1.26.4 to 1.26.5 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python
#20 - Bump tensorflow-gpu from 2.3.0 to 2.5.0 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies, python
#19 - Bump browserslist from 4.16.0 to 4.16.6 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript
#18 - Bump tensorflow from 2.3.0 to 2.5.0
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies, python
#17 - Bump tensorflow from 2.3.0 to 2.5.0 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies, python
#16 - Bump postcss from 8.2.1 to 8.2.15 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript
#15 - Bump lodash from 4.17.20 to 4.17.21 in /WebDECIMER/frontend
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript
#14 - Bump rsa from 4.6 to 4.7 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python
#13 - could you publish your training data sets?
Issue -
State: closed - Opened by tbwxmu over 3 years ago
- 1 comment
#12 - Bump urllib3 from 1.26.3 to 1.26.4 in /WebDECIMER
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python