Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Kohulan/DECIMER-Image-Segmentation issues and pull requests

#108 - Development

Pull Request - State: closed - Opened by Kohulan 5 months ago

#107 - On segmented images terminated atom groups or atoms are not included

Issue - State: open - Opened by alexey-krasnov 5 months ago - 4 comments
Labels: bug

#106 - My program got killed

Issue - State: closed - Opened by shivanandakandagalla 7 months ago - 2 comments

#105 - chore(master): release 1.4.0

Pull Request - State: closed - Opened by Kohulan 7 months ago - 1 comment
Labels: autorelease: tagged

#104 - Improved line detection and bigger kernel

Pull Request - State: closed - Opened by OBrink 7 months ago - 1 comment
Labels: enhancement

#103 - Improved line detection

Pull Request - State: closed - Opened by OBrink 7 months ago - 1 comment
Labels: enhancement

#102 - There is a question

Issue - State: closed - Opened by pjc12345678 7 months ago - 3 comments
Labels: question

#101 - chore(master): release 1.3.0

Pull Request - State: closed - Opened by Kohulan 8 months ago - 1 comment
Labels: autorelease: tagged

#100 - New model, new seed pixel determination, new expansion procedure

Pull Request - State: closed - Opened by OBrink 8 months ago - 1 comment
Labels: enhancement, dependencies

#99 - chore(master): release 1.2.5

Pull Request - State: closed - Opened by Kohulan 9 months ago - 1 comment
Labels: autorelease: tagged

#98 - Fix microservice paper bug

Pull Request - State: closed - Opened by OBrink 9 months ago

#97 - chore(master): release 1.2.4

Pull Request - State: closed - Opened by Kohulan 9 months ago - 1 comment
Labels: autorelease: tagged

#96 - fix: expansion crash when no structures have been detected #95

Pull Request - State: closed - Opened by OBrink 9 months ago
Labels: bug, enhancement

#95 - Segmentation error on page without structure

Issue - State: closed - Opened by OBrink 9 months ago
Labels: bug

#94 - chore(master): release 1.2.3

Pull Request - State: closed - Opened by Kohulan 10 months ago - 1 comment
Labels: autorelease: tagged

#93 - doc: version bump: 2.1.3

Pull Request - State: closed - Opened by OBrink 10 months ago

#92 - chore(master): release 1.2.2

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 2 comments
Labels: autorelease: tagged

#91 - chore(master): release 1.2.1

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment
Labels: autorelease: tagged

#90 - doc: version bump: 1.2.1

Pull Request - State: closed - Opened by OBrink 10 months ago

#89 - doc: version bump: 1.2.1

Pull Request - State: closed - Opened by OBrink 10 months ago

#88 - fix: GH action for pypi releases

Pull Request - State: closed - Opened by OBrink 10 months ago
Labels: bug

#87 - feat: GH Action for automated Pypi releases

Pull Request - State: closed - Opened by OBrink 10 months ago
Labels: enhancement

#86 - chore(master): release 1.2.0

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment
Labels: autorelease: tagged

#85 - fix: formatted with black and include release

Pull Request - State: closed - Opened by Kohulan 10 months ago

#84 - Adaptive exclusion mask line length definition

Pull Request - State: closed - Opened by OBrink 10 months ago
Labels: enhancement

#83 - version bump: 1.1.3 --> 1.1.4

Pull Request - State: closed - Opened by OBrink 10 months ago

#82 - fix: avoid crash during mask application

Pull Request - State: closed - Opened by OBrink 10 months ago

#81 - fix: fix broken test case

Pull Request - State: closed - Opened by OBrink 10 months ago

#80 - fix: smaller threshold for definition of long vertical or horizontal lines

Pull Request - State: closed - Opened by OBrink 10 months ago
Labels: enhancement

#79 - Development

Pull Request - State: closed - Opened by Kohulan 10 months ago

#78 - fix: handle failed mask center determination #63

Pull Request - State: closed - Opened by OBrink 10 months ago
Labels: bug

#77 - Horizontal vertical line exclusion

Pull Request - State: closed - Opened by OBrink 10 months ago
Labels: enhancement

#76 - Could you offer the dataset (and the code of training process)？

Issue - State: closed - Opened by LingjieBao1998 10 months ago - 2 comments
Labels: question

#75 - fix crash-inducing bug introduced with #72

Pull Request - State: closed - Opened by OBrink 10 months ago
Labels: bug

#74 - fix crash when no segments are detected (since #72)

Pull Request - State: closed - Opened by OBrink 10 months ago
Labels: bug

#73 - sync with drughutner extraction

Pull Request - State: closed - Opened by deimos1078 11 months ago

#72 - top down, left right reading ordered segments

Pull Request - State: closed - Opened by deimos1078 11 months ago - 2 comments

#71 - sort the segments on each image

Pull Request - State: closed - Opened by Iagea 11 months ago - 1 comment

#70 - Error with expanded mask function

Issue - State: closed - Opened by Iagea about 1 year ago - 5 comments

#69 - Poppler error also in Linux

Issue - State: closed - Opened by Iagea about 1 year ago - 1 comment
Labels: documentation, dependencies

#68 - Update docstrings

Pull Request - State: closed - Opened by OBrink about 1 year ago
Labels: documentation

#67 - Cannot install DECIMER transformer and segmenter in same environment: tensorflow version different

Issue - State: closed - Opened by ad-hardy over 1 year ago - 2 comments
Labels: enhancement

#66 - Deprecation fixes

Pull Request - State: closed - Opened by ad-hardy over 1 year ago - 1 comment

#65 - Deprecated datatypes/args on new install of 1.1.1

Issue - State: closed - Opened by ad-hardy over 1 year ago - 3 comments
Labels: bug, help wanted

#64 - Bump tensorflow from 2.10.0 to 2.11.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#63 - Error with single page PDF at the get_mask_center function

Issue - State: closed - Opened by Iagea over 1 year ago - 3 comments
Labels: bug

#62 - Could not load dynamic library 'libcudart.so.11.0'

Issue - State: closed - Opened by Iagea over 1 year ago - 3 comments
Labels: question

#61 - Bump tensorflow from 2.10.0 to 2.10.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#60 - AttributeError: 'NoneType' object has no attribute 'dtype'

Issue - State: closed - Opened by pythonnewbie3 over 1 year ago - 3 comments
Labels: question

#59 - Update to work with Tensorflow 2.10

Pull Request - State: closed - Opened by OBrink over 1 year ago
Labels: enhancement, python

#58 - Use pystow for storing model file in user directory

Issue - State: closed - Opened by OBrink over 1 year ago - 2 comments
Labels: enhancement

#57 - Bump protobuf from 3.19.0 to 3.19.5

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, python

#56 - can't detect structures and give correct segmentations in compact images

Issue - State: closed - Opened by TheOnlylight almost 2 years ago - 1 comment

#55 - Dataset issues

Issue - State: closed - Opened by Sbboss about 2 years ago - 1 comment

#54 - Bump tensorflow from 2.3.0 to 2.7.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, python

#53 - Need to downgrade protobuf following the installation

Issue - State: closed - Opened by Iagea about 2 years ago - 1 comment
Labels: bug, dependencies

#52 - Bump tensorflow from 2.3.0 to 2.6.4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, python

#51 - Can't reproduce the original results with the example page

Issue - State: closed - Opened by OBrink about 2 years ago - 4 comments
Labels: bug

#50 - added unit tests for mask expansion

Pull Request - State: closed - Opened by zmahnoor14 about 2 years ago

#49 - Major code refactoring + Packaging

Pull Request - State: closed - Opened by OBrink about 2 years ago

#48 - Bump minimist from 1.2.5 to 1.2.6 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies, javascript

#47 - Bump lodash-es from 4.17.15 to 4.17.21 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies, javascript

#46 - Notebook Example - Performance Not Replicable

Issue - State: closed - Opened by Mblakey over 2 years ago - 1 comment

#45 - Bump follow-redirects from 1.13.1 to 1.14.8 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies, javascript

#44 - Bump protobuf from 3.14.0 to 3.15.0 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies, python

#43 - Bump tensorflow from 2.3.0 to 2.5.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, python

#42 - Bump tensorflow from 2.3.1 to 2.5.3 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies, python

#41 - Bump tensorflow-gpu from 2.3.0 to 2.5.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, python

#40 - Bump tensorflow-gpu from 2.3.0 to 2.5.3 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies, python

#39 - Bump ipython from 7.19.0 to 7.31.1 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies, python

#38 - Bump follow-redirects from 1.13.1 to 1.14.7 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, javascript

#37 - Bump lxml from 4.6.3 to 4.6.5 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies, python

#36 - How do I train the model with my own data and moldetect.py ？

Issue - State: closed - Opened by stud2008 over 2 years ago - 1 comment
Labels: question, wontfix

#35 - Bump tensorflow-gpu from 2.3.0 to 2.5.2 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, python

#34 - Bump tensorflow-gpu from 2.3.0 to 2.5.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, python

#33 - Including molecule label in an output image

Issue - State: closed - Opened by willfinnigan over 2 years ago - 2 comments
Labels: question

#32 - Bump sqlparse from 0.4.1 to 0.4.2 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, python

#31 - Expand is too big. What can I modify？

Issue - State: closed - Opened by rookiexiao123 almost 3 years ago - 2 comments
Labels: question

#30 - IndexError: index 0 is out of bounds for axis 0 with size 0

Issue - State: closed - Opened by rookiexiao123 almost 3 years ago - 11 comments
Labels: question

#29 - Bump tensorflow from 2.3.0 to 2.5.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, python

#28 - Bump tensorflow from 2.3.1 to 2.5.1 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, python

#27 - Bump tensorflow-gpu from 2.3.0 to 2.5.1 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, python

#26 - Bump tensorflow-gpu from 2.3.0 to 2.5.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, python

#25 - Bump jszip from 3.5.0 to 3.7.0 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, javascript

#24 - Bump tensorflow from 2.3.1 to 2.4.2 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, python

#23 - Bump path-parse from 1.0.6 to 1.0.7 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies, javascript

#22 - My training loss looks very good, and the verification loss has been increasing from the beginning.

Issue - State: closed - Opened by rookiexiao123 almost 3 years ago - 6 comments
Labels: question

#21 - Bump urllib3 from 1.26.4 to 1.26.5 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies, python

#20 - Bump tensorflow-gpu from 2.3.0 to 2.5.0 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, python

#19 - Bump browserslist from 4.16.0 to 4.16.6 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies, javascript

#18 - Bump tensorflow from 2.3.0 to 2.5.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, python

#17 - Bump tensorflow from 2.3.0 to 2.5.0 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, python

#16 - Bump postcss from 8.2.1 to 8.2.15 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies, javascript

#15 - Bump lodash from 4.17.20 to 4.17.21 in /WebDECIMER/frontend

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies, javascript

#14 - Bump rsa from 4.6 to 4.7 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies, python

#13 - could you publish your training data sets?

Issue - State: closed - Opened by tbwxmu about 3 years ago - 1 comment

#12 - Bump urllib3 from 1.26.3 to 1.26.4 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies, python

#11 - Available validation set？

Issue - State: closed - Opened by HBioquant over 3 years ago - 2 comments

#10 - Bump lxml from 4.6.2 to 4.6.3 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python

#9 - Bump pygments from 2.7.2 to 2.7.4 in /WebDECIMER

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, python