KlausVigo/phangorn issues and pull requests

#179 - Release phangorn 2.12.2

Issue - State: open - Opened by KlausVigo 8 days ago

#178 - libgfortran issues

Issue - State: open - Opened by mretier 13 days ago - 1 comment

#176 - ancestral.pml gives NaN values

Issue - State: open - Opened by kbhoehn about 1 month ago - 1 comment

#175 - Suggestion/request for bab (branch and bound) function when runtime is long

Issue - State: open - Opened by bbitarello about 2 months ago - 3 comments

#174 - updates from master

Pull Request - State: closed - Opened by KlausVigo 2 months ago

#173 - Consistency Index error

Issue - State: open - Opened by kr3118 3 months ago - 1 comment

#172 - Inquiry About Setting Character Weights in `optim.parsimony` Function

Issue - State: open - Opened by Xinru99 3 months ago - 2 comments

#171 - Duplicated sites are ignored when computing parsimony using "site" option

Issue - State: closed - Opened by cwbcm 4 months ago - 2 comments

#170 - iupac DNA seq

Issue - State: closed - Opened by nicolo-tellini 4 months ago - 1 comment

#169 - update man pages

Pull Request - State: closed - Opened by KlausVigo 4 months ago

#168 - sync Armadillo

Pull Request - State: closed - Opened by KlausVigo 5 months ago

#167 - Simulate coding nucleotide sequences

Issue - State: open - Opened by trilisser 5 months ago

#166 - fix labels land plot margins in plot.networx

Issue - State: open - Opened by KlausVigo 6 months ago

#165 - ancestral.pars differences between 2.11.1 and 3.0.0

Issue - State: open - Opened by colejensen 6 months ago

#164 - Please use `make_graph` instead of `graph`

Issue - State: closed - Opened by szhorvat 7 months ago - 1 comment

#163 - Single data point causes BAB function to return error

Issue - State: open - Opened by spetersongit 8 months ago - 1 comment

#162 - rotate labels

Issue - State: closed - Opened by locusclassicus 9 months ago - 5 comments

#161 - phangorn for webR / wasm

Issue - State: closed - Opened by isbool 9 months ago

#160 - Error in edgeMatrix[k, 1:6] <- c(ab, cd, i, f) : number of items to replace is not a multiple of replacement length

Issue - State: closed - Opened by amizeranschi 10 months ago - 1 comment

#159 - OSX 14: Installation error

Issue - State: closed - Opened by akhst7 10 months ago - 2 comments

#158 - plm_bb gets into a endless Ratchet iteration loop ?

Issue - State: closed - Opened by akhst7 11 months ago - 2 comments

#157 - Error message 'R session aborted' when running modelTest(primates)

Issue - State: open - Opened by Zhangvvv 11 months ago - 2 comments

#156 - gamma shape completely change after optimisation

Issue - State: closed - Opened by trilisser 12 months ago - 4 comments

#155 - nnls.tree fails with some trees

Issue - State: closed - Opened by mguzmann about 1 year ago - 2 comments

#154 - R is crashed when loading a phangorn library

Issue - State: closed - Opened by trilisser about 1 year ago - 5 comments

#153 - library(phangorn) error

Issue - State: open - Opened by wang0430 about 1 year ago - 3 comments

#152 - modelTest seems to require additional inputs

Issue - State: closed - Opened by Phylloxera about 1 year ago - 5 comments

#151 - test

Pull Request - State: closed - Opened by KlausVigo over 1 year ago

#150 - write.phyDat Problem

Issue - State: closed - Opened by ChristophKnapp over 1 year ago - 3 comments

#149 - pml segfault: memory not mapped

Issue - State: open - Opened by lemmonquiche over 1 year ago - 3 comments

#148 - Data availability

Issue - State: open - Opened by Neclow over 1 year ago

#147 - optim.pml hangs infinitely

Issue - State: closed - Opened by hberger over 1 year ago - 4 comments

#146 - densiTree not working

Issue - State: closed - Opened by Cosmophasis over 1 year ago - 2 comments

#145 - Unable to load module "Fitch_mod": vector is too large

Issue - State: closed - Opened by mdhall272 over 1 year ago - 3 comments

#144 - `pml()` segfault: memory not mapped

Issue - State: open - Opened by iferres almost 2 years ago - 2 comments

#143 - Replace rgl.texts with texts3d

Pull Request - State: closed - Opened by dmurdoch almost 2 years ago - 1 comment

#142 - add transfer bs and assigning bs

Pull Request - State: closed - Opened by iris-bk almost 2 years ago - 1 comment

#141 - Different results from modelTest() with the same input file

Issue - State: closed - Opened by TMAdams almost 2 years ago - 4 comments