KarrLab/obj_tables issues and pull requests

#163 - Improve parsing of expressions by using ASTs

Issue - State: open - Opened by artgoldberg about 4 years ago
Labels: enhancement

#162 - Documentation warning about aliased references

Issue - State: open - Opened by artgoldberg about 4 years ago
Labels: discussion

#161 - Error message: Add hint about defining all schema classes before instantiating them

Pull Request - State: closed - Opened by 0u812 over 4 years ago - 1 comment

#160 - Warning RE: path collisions on a case-insensitive filesystem

Issue - State: closed - Opened by artgoldberg over 4 years ago - 2 comments

#159 - Cookies notification bar text overflows on mobile

Issue - State: closed - Opened by bilalshaikh42 over 4 years ago - 1 comment
Labels: bug

#158 - Add more informative error messages

Issue - State: closed - Opened by jonrkarr over 4 years ago - 1 comment
Labels: enhancement

#157 - Add options to schema visualization to display column names or verbose names

Issue - State: open - Opened by jonrkarr over 4 years ago
Labels: enhancement, future

#156 - Uncontrolled columns - import and export

Issue - State: open - Opened by liebermeister over 4 years ago - 1 comment
Labels: enhancement, future

#155 - How to define the name of a schema?

Issue - State: closed - Opened by liebermeister over 4 years ago - 2 comments
Labels: documentation

#154 - Metabolic models for paper: add references and explanations

Issue - State: closed - Opened by liebermeister over 4 years ago - 1 comment
Labels: documentation

#153 - Grouped columns - optional alternative syntax?

Issue - State: open - Opened by liebermeister over 4 years ago - 4 comments
Labels: enhancement, future

#152 - Order of tables after concatenation

Issue - State: closed - Opened by liebermeister over 4 years ago - 1 comment
Labels: enhancement

#151 - Retain order of tables in multi.csv or multi.tsv file

Issue - State: closed - Opened by liebermeister over 4 years ago - 2 comments
Labels: enhancement, future

#150 - Parse comments in tabular schema files

Issue - State: closed - Opened by liebermeister over 4 years ago - 4 comments
Labels: enhancement, future

#149 - datatype "Dict"?

Issue - State: closed - Opened by liebermeister over 4 years ago - 1 comment
Labels: question

#148 - Add more concise documentation of arguments for the attributes

Issue - State: open - Opened by liebermeister over 4 years ago - 5 comments
Labels: future, documentation

#147 - Vaidation error - can you help?

Issue - State: closed - Opened by liebermeister over 4 years ago - 1 comment
Labels: question

#146 - Multiple tables of the same class

Issue - State: closed - Opened by liebermeister over 4 years ago - 1 comment
Labels: bug

#145 - Web application - data file upload missing

Issue - State: closed - Opened by liebermeister over 4 years ago - 1 comment
Labels: bug

#144 - Add argument to attributes for column width

Issue - State: open - Opened by jonrkarr over 4 years ago - 3 comments
Labels: enhancement, future

#143 - Add attribute for local file paths

Issue - State: closed - Opened by jonrkarr over 4 years ago - 1 comment
Labels: enhancement

#142 - Organize website into 3 pages

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#141 - Add tutorial (Jupyter notebook) on revisioning schemas and migrating datasets

Issue - State: open - Opened by jonrkarr almost 5 years ago
Labels: future, documentation

#140 - Make installation compatible with older versions of pkg_utils

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: bug

#139 - Support internationalization (e.g., English, French, etc.)

Issue - State: open - Opened by jonrkarr almost 5 years ago
Labels: enhancement, future

#138 - Describe how to make columns required in documentation

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#137 - Correct "::" in examples

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: bug, documentation

#136 - Track the table that each object instance came from

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: enhancement

#135 - Add option to not print null columns

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: enhancement

#134 - Additional features for LocalAttribute class

Issue - State: closed - Opened by johnsekar almost 5 years ago - 1 comment
Labels: enhancement

#133 - Add more lay introduction to website

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#132 - Document addressing system for documents, tables, rows, and columns

Issue - State: open - Opened by jonrkarr almost 5 years ago
Labels: documentation

#131 - Add attributes for markup and data serialization formats

Issue - State: open - Opened by jonrkarr almost 5 years ago
Labels: enhancement, future

#130 - Add attribute for measurements (value, uncertainty, units)

Issue - State: open - Opened by jonrkarr almost 5 years ago
Labels: enhancement, future

#129 - bump to 0.0.9 and push to PyPI

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: release

#128 - Update obtables.org

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#127 - Describe use cases in website

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#126 - Add comparison to other tools to website

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#125 - More fully convert Python schemas to tabular format

Issue - State: open - Opened by jonrkarr almost 5 years ago
Labels: enhancement, future

#124 - Proofread website and README

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#123 - Update and proofread Sphinx documentation

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#122 - What convention should we use for specifying compartmentalization?

Issue - State: closed - Opened by jonrkarr almost 5 years ago
Labels: discussion

#121 - What extension should we recommend for merged CSV and TSV files?

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: discussion

#120 - Make sure that generated Python modules import modules with domain-specific attributes

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: testing

#119 - Integrate bpforms/bcforms

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: enhancement

#118 - Make non-essential requirements optional

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: enhancement

#117 - Add and test Dockerfile

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: documentation

#116 - Add the name of the schema to the document/table metadata

Issue - State: closed - Opened by jonrkarr almost 5 years ago - 1 comment
Labels: enhancement

#115 - Increase the maximum length for SlugAttribute

Issue - State: closed - Opened by YinHoon about 5 years ago - 1 comment

#114 - Make sure Document attributes aren't repeated in multi CSV and xlsx export

Issue - State: closed - Opened by jonrkarr about 5 years ago - 1 comment
Labels: enhancement

#113 - Specify row/table orientation in table heading

Issue - State: closed - Opened by jonrkarr about 5 years ago - 2 comments
Labels: enhancement

#112 - Add inheritance to tabular schema definitions

Issue - State: closed - Opened by jonrkarr about 5 years ago - 3 comments
Labels: enhancement

#111 - Allow multiple instances of the same table type

Issue - State: closed - Opened by jonrkarr about 5 years ago - 3 comments
Labels: enhancement

#110 - Organize attributes into domain-specific modules

Issue - State: closed - Opened by jonrkarr about 5 years ago - 2 comments
Labels: enhancement

#109 - Additional data types

Issue - State: closed - Opened by jonrkarr about 5 years ago - 2 comments
Labels: enhancement

#108 - Point web page to SBtab examples in Git repo

Issue - State: closed - Opened by jonrkarr about 5 years ago - 1 comment
Labels: documentation

#107 - Add document, table properties to JSON

Issue - State: closed - Opened by jonrkarr about 5 years ago - 1 comment
Labels: enhancement

#106 - Add ObjNames name and use for JSON output

Issue - State: closed - Opened by jonrkarr about 5 years ago - 2 comments
Labels: enhancement

#105 - Requirement that Observables (and other Models, I presume) have a unique expression generates obscure error msg

Issue - State: closed - Opened by artgoldberg over 5 years ago - 1 comment
Labels: enhancement

#104 - Use longer comment character than %

Issue - State: closed - Opened by jonrkarr over 5 years ago - 1 comment
Labels: enhancement

#103 - Add option to rest and command line to suppress TOC

Issue - State: closed - Opened by jonrkarr over 5 years ago - 1 comment
Labels: enhancement

#102 - json / yaml export - complicated data structure

Issue - State: closed - Opened by liebermeister over 5 years ago - 18 comments
Labels: enhancement, question, discussion

#101 - csv / tsv export - only one table is exported

Issue - State: closed - Opened by liebermeister over 5 years ago - 5 comments
Labels: question

#100 - Add additional ! to worksheet names

Issue - State: closed - Opened by jonrkarr over 5 years ago - 2 comments
Labels: enhancement

#99 - graphviz dependency for obj_tables

Issue - State: closed - Opened by liebermeister over 5 years ago - 1 comment
Labels: enhancement, question

#98 - obj-tables commandline help text

Issue - State: closed - Opened by liebermeister over 5 years ago - 1 comment
Labels: question

#97 - obj-tables command line tool throws an error

Issue - State: closed - Opened by liebermeister over 5 years ago - 2 comments

#96 - Automatically detect .multi.csv/.multi.tsv format

Issue - State: closed - Opened by jonrkarr over 5 years ago - 1 comment
Labels: enhancement

#95 - Support document headings (!!!)

Issue - State: closed - Opened by jonrkarr over 5 years ago - 2 comments
Labels: enhancement

#94 - 'NumpyArrayAttribute' object has no attribute 'shape'

Issue - State: closed - Opened by paulflang over 5 years ago - 5 comments
Labels: question

#93 - Allow related attributes of wc_kb classes to be of type KnowledgeBaseObject

Issue - State: closed - Opened by paulflang over 5 years ago - 3 comments
Labels: question

#92 - Allow overriding of attributes when inheriting from classes in wc_kb

Issue - State: closed - Opened by paulflang over 5 years ago - 3 comments
Labels: question

#91 - Potentially support SBtab-style of headings for nested tables for *-to-one relationships

Issue - State: closed - Opened by jonrkarr over 5 years ago - 1 comment
Labels: discussion

#90 - Potentially rename terminology in declarative schema definitions

Issue - State: closed - Opened by jonrkarr over 5 years ago - 3 comments
Labels: enhancement, discussion

#89 - Automatically trim spaces from column headings

Issue - State: closed - Opened by jonrkarr over 5 years ago - 1 comment
Labels: enhancement

#88 - Allow single or double quotes in metadata rows (!!ObjTables ...)

Issue - State: closed - Opened by jonrkarr over 5 years ago - 1 comment
Labels: enhancement

#87 - Fix broken references in Excel files

Issue - State: closed - Opened by jonrkarr over 5 years ago - 1 comment
Labels: bug

#86 - Clarify terminology

Issue - State: closed - Opened by jonrkarr over 5 years ago - 1 comment
Labels: enhancement

#85 - In the migrations directory of data repos, have YAML files with lists of the files that are under the control of the schema

Issue - State: open - Opened by jonrkarr over 5 years ago
Labels: enhancement, future

GitHub / KarrLab/obj_tables issues and pull requests