Ecosyste.ms: Issues

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GitHub / Karplus-Lab-OSU/ensemblator issues and pull requests

#30 - sklearn is installed, but... ModuleNotFoundError: No module named 'sklearn'

Issue - State: open - Opened by lucajovine almost 2 years ago - 1 comment

#29 - add an option to NOT consider alternate conformations

Issue - State: open - Opened by aebrer over 7 years ago
Labels: enhancement

#28 - Add an automatic cutoff distance option

Issue - State: closed - Opened by aebrer about 8 years ago - 1 comment
Labels: enhancement

#27 - the README is way overdue for an update

Issue - State: closed - Opened by aebrer about 8 years ago - 1 comment
Labels: bug, enhancement

#26 - Implement a simple version of "core-ness"

Issue - State: open - Opened by aebrer about 8 years ago
Labels: enhancement

#25 - Color option not working.

Issue - State: closed - Opened by aebrer about 8 years ago - 2 comments
Labels: bug

#24 - Add "insignificance" bars to silhouette-like plots

Issue - State: closed - Opened by aebrer over 8 years ago - 1 comment
Labels: enhancement

#23 - Deal with non-canonical amino acids

Issue - State: closed - Opened by aebrer over 8 years ago
Labels: bug

#22 - Dendrogram plots

Issue - State: closed - Opened by aebrer over 8 years ago - 1 comment
Labels: enhancement

#21 - Use Ensemble Clustering

Issue - State: closed - Opened by aebrer over 8 years ago - 1 comment
Labels: enhancement

#20 - Plots get screwy if the last residue is a proline.

Issue - State: open - Opened by aebrer over 8 years ago
Labels: bug

#19 - Need to sort all atoms in residue

Issue - State: closed - Opened by aebrer over 8 years ago - 1 comment

#18 - Re-add a log

Issue - State: open - Opened by aebrer over 8 years ago
Labels: enhancement

#17 - also plot group m vs all other groups

Issue - State: open - Opened by aebrer over 8 years ago
Labels: enhancement

#16 - add max distance to plots

Issue - State: closed - Opened by aebrer over 8 years ago - 1 comment
Labels: enhancement

#15 - PDB filenames with spaces crashes the prepare_input

Issue - State: open - Opened by aebrer over 8 years ago - 1 comment
Labels: bug

#14 - Weighted Cores?

Issue - State: open - Opened by aebrer over 8 years ago - 1 comment
Labels: enhancement

#13 - New metric for clustering

Issue - State: closed - Opened by aebrer over 8 years ago - 1 comment
Labels: enhancement

#12 - tkinter crashes after ~ 3 runs

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment

#11 - Automatic clustering method does not respect the use AVG option

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment

#10 - Readme is no longer accurate

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment

#9 - Work with files outside the PWD

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment
Labels: enhancement

#8 - Change the output file "prepared_input_legend.tsv"

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment

#7 - Convert everything to modules...

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment
Labels: enhancement

#6 - Write a GUI

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment
Labels: enhancement

#5 - Closest approach less ~5%

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment

#4 - --color option conflicts with the function that separates files based on group

Issue - State: closed - Opened by aebrer almost 9 years ago - 1 comment

#3 - Make Ensemblator output an aligned pdb file for group M and group N

Issue - State: closed - Opened by aebrer about 9 years ago - 1 comment

#2 - prepare_inupt.py randomly sorts the final ensemble file

Issue - State: closed - Opened by aebrer about 9 years ago - 1 comment

#1 - Log Files are not that great

Issue - State: closed - Opened by aebrer about 9 years ago - 1 comment
Labels: enhancement