Ecosyste.ms: Issues

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GitHub / KamitaniLab/bdpy issues and pull requests

#94 - add lock funciont to kvs.py

Pull Request - State: closed - Opened by ShuntaroAoki about 1 month ago - 1 comment

#93 - [fix] fix kvs.delete and add test_delete

Pull Request - State: closed - Opened by ShuntaroAoki about 1 month ago - 1 comment

#92 - key-value-store implemented on sqlite3

Pull Request - State: closed - Opened by ShuntaroAoki about 2 months ago - 1 comment

#91 - Fix issue #72 Forward Hooks Persist After Destroying FeatureExtractor

Pull Request - State: closed - Opened by ShunsukeOnoo about 2 months ago - 2 comments

#89 - テストケースの修正(preproc)

Pull Request - State: closed - Opened by myaokai 7 months ago - 1 comment
Labels: bug

#88 - テストケースの修正(bdata)

Pull Request - State: closed - Opened by myaokai 7 months ago - 1 comment
Labels: bug

#87 - テストケースの修正(evals/metrics)

Pull Request - State: closed - Opened by myaokai 7 months ago - 1 comment
Labels: bug

#86 - テストケースの修正(evals/metrics)

Pull Request - State: closed - Opened by myaokai 7 months ago - 1 comment
Labels: bug

#85 - Feature inversion task (#81) に関わるPR内のテストコードの作成

Pull Request - State: closed - Opened by myaokai 8 months ago - 1 comment

#84 - Raise error when supported option is given

Issue - State: open - Opened by ShuntaroAoki 9 months ago

#82 - fix the behavior of _parse_layer_name

Pull Request - State: closed - Opened by ganow 9 months ago - 1 comment

#81 - Feature inversion pipeline for modular iCNN construction

Pull Request - State: closed - Opened by ganow 9 months ago - 5 comments

#80 - Update asynchronous Features.get()

Pull Request - State: closed - Opened by ganow 9 months ago - 2 comments

#79 - Add new model trainer class

Issue - State: open - Opened by ShuntaroAoki 10 months ago

#78 - Update BData

Issue - State: open - Opened by ShuntaroAoki 10 months ago

#77 - Refactor reconstruction module

Issue - State: closed - Opened by ShuntaroAoki 10 months ago

#76 - Support attention layer (mlp)

Issue - State: open - Opened by kencan7749 11 months ago

#75 - make features.get() asynchronous

Pull Request - State: closed - Opened by ganow 11 months ago - 1 comment

#74 - [update] Reduce unnecessary copying of arrays

Pull Request - State: closed - Opened by micchu 11 months ago - 1 comment

#73 - Idea for improving the speed of Features().get()

Issue - State: closed - Opened by ganow 11 months ago

#72 - Forward Hooks Persist After Destroying FeatureExtractor

Issue - State: closed - Opened by ShunsukeOnoo about 1 year ago

#71 - [add] add norm1-pool5 generators definition

Pull Request - State: closed - Opened by micchu about 1 year ago - 2 comments

#70 - Update OpenNeuro data production code

Pull Request - State: closed - Opened by ShuntaroAoki about 1 year ago

#68 - Maybe we should consider avoiding dependence on nipy

Issue - State: closed - Opened by ganow over 1 year ago - 3 comments

#67 - Migrating packaging system from setup.py to pyproject.toml

Pull Request - State: closed - Opened by ganow over 1 year ago - 5 comments

#66 - Refactor test modules

Pull Request - State: closed - Opened by ganow over 1 year ago - 6 comments

#65 - Refactoring Type Interface for Features/ModelTraining/ModelTest

Pull Request - State: closed - Opened by ganow over 1 year ago

#64 - installation from pip doesn't install pandas

Issue - State: closed - Opened by ganow over 1 year ago - 2 comments

#63 - Update utils.py

Pull Request - State: closed - Opened by micchu over 1 year ago

#62 - Update dataform_features.md

Pull Request - State: closed - Opened by ShuntaroAoki over 1 year ago

#61 - Add the function to save the selected voxels

Pull Request - State: open - Opened by micchu over 1 year ago

#60 - [fix] fix icnn functions for channel selection

Pull Request - State: closed - Opened by micchu over 1 year ago

#59 - [Updated] add cross correlation (pattern)

Pull Request - State: closed - Opened by chengfanbrain over 1 year ago - 2 comments

#58 - [Updated] add box plot

Pull Request - State: closed - Opened by chengfanbrain over 1 year ago

#57 - Added layer map for caffenet

Pull Request - State: closed - Opened by chengfanbrain over 1 year ago

#56 - [fix] feature extraction on detach

Pull Request - State: closed - Opened by micchu over 1 year ago - 2 comments

#55 - vstack fails with numpy arrays for labels

Issue - State: open - Opened by mabdelhack over 1 year ago

#54 - Update feature extractor

Pull Request - State: closed - Opened by ganow over 1 year ago - 2 comments

#53 - Test case for torch

Pull Request - State: closed - Opened by ganow over 1 year ago - 1 comment

#52 - Test codes depend on external files

Issue - State: closed - Opened by ganow over 1 year ago - 2 comments

#51 - Error around environment setting

Issue - State: closed - Opened by ganow over 1 year ago - 3 comments

#50 - [fix] fix generator_postproc

Pull Request - State: closed - Opened by micchu over 1 year ago

#49 - Dev mri fmriprep counfounds

Pull Request - State: closed - Opened by micchu over 1 year ago

#48 - [fix] Change nan to -np.inf before argsort

Pull Request - State: closed - Opened by micchu over 1 year ago

#47 - Replace np.float with float

Issue - State: closed - Opened by ShuntaroAoki over 1 year ago - 1 comment

#46 - select_topのnan対策

Issue - State: open - Opened by micchu over 1 year ago - 1 comment

#45 - [add] add resolve_map

Pull Request - State: closed - Opened by micchu over 1 year ago

#44 - unified pytorch iCNN reconstruction codes

Pull Request - State: closed - Opened by dyarumokumu about 2 years ago

#43 - [update] update the grouping function of swarm+box in makeplots

Pull Request - State: closed - Opened by micchu over 2 years ago

#42 - Adding hcp rois

Issue - State: open - Opened by Holden-bit over 2 years ago - 1 comment

#41 - [add] option for maintaining aspect ratio

Pull Request - State: closed - Opened by dyarumokumu over 2 years ago

#40 - [add] add grouping function to swarm+box

Pull Request - State: closed - Opened by micchu over 2 years ago

#39 - [update] add the image_list treating str/ndarray/PIL.Image elements

Pull Request - State: closed - Opened by micchu over 2 years ago

#38 - [update] set sans-serif font as default font

Pull Request - State: closed - Opened by micchu over 2 years ago

#37 - [add] add swarm+box to makeplots

Pull Request - State: closed - Opened by micchu over 2 years ago

#36 - [fix] mistype

Pull Request - State: closed - Opened by hirano1412 over 2 years ago

#35 - [add] remove_nan_dist on evals/metrics.py

Pull Request - State: closed - Opened by micchu over 2 years ago

#34 - [fix] forgot definition of rgb_mean as class-variables

Pull Request - State: closed - Opened by hirano1412 over 2 years ago

#33 - [add] add alexnet to model.py

Pull Request - State: closed - Opened by hirano1412 over 2 years ago

#32 - [add] add paired violin plot

Pull Request - State: closed - Opened by dyarumokumu over 2 years ago - 1 comment

#31 - Makeplots swarm

Pull Request - State: closed - Opened by micchu over 2 years ago

#30 - [fix] update grouping function on violinplot

Pull Request - State: closed - Opened by micchu over 2 years ago

#29 - [add] rgb_mean option

Pull Request - State: closed - Opened by hirano1412 over 2 years ago

#28 - Recreate PR #26

Pull Request - State: open - Opened by ShuntaroAoki over 2 years ago

#27 - Recreate PR #26

Pull Request - State: closed - Opened by ShuntaroAoki over 2 years ago

#26 - Ks dev

Pull Request - State: closed - Opened by kencan7749 over 2 years ago

#25 - Ks dev

Pull Request - State: closed - Opened by kencan7749 over 2 years ago

#24 - [feat] add rounding option to add_roimask

Pull Request - State: closed - Opened by mabdelhack over 2 years ago

#23 - [add] add draw_gropu_image_set function

Pull Request - State: closed - Opened by micchu over 2 years ago

#22 - [fix] fix the xticks/yticks font size

Pull Request - State: closed - Opened by micchu over 2 years ago

#21 - [update] add fontsize parameter to make_violinplot

Pull Request - State: closed - Opened by micchu over 2 years ago

#20 - [fixed] resolve deprecation warnings

Pull Request - State: closed - Opened by dyarumokumu almost 3 years ago

#19 - H5pyDeprecationWarning and YAMLLoadWarning

Issue - State: closed - Opened by dyarumokumu almost 3 years ago - 1 comment

#18 - [fix] fixed typo

Pull Request - State: closed - Opened by ARUOHTA almost 3 years ago

#17 - [update] add func to return the final gen feat in icnn.py

Pull Request - State: closed - Opened by micchu about 3 years ago

#13 - [fix] fix make_violinplots (issue #11)

Pull Request - State: closed - Opened by ShuntaroAoki over 3 years ago

#12 - Confounding vectors exceed range when making bdata

Issue - State: open - Opened by LeonHWan over 3 years ago

#11 - fig list is not work

Issue - State: closed - Opened by kencan7749 over 3 years ago - 1 comment

#10 - nifti to bData

Issue - State: open - Opened by dingmiaomiao over 3 years ago - 8 comments

#9 - Export Data object as a nifti file

Issue - State: open - Opened by scarere over 3 years ago - 2 comments
Labels: enhancement

#8 - [feat] add baseline in Normalize (by Fan Cheng)

Pull Request - State: closed - Opened by ShuntaroAoki over 3 years ago

#7 - add stimeval package

Pull Request - State: closed - Opened by kencan7749 over 3 years ago - 1 comment
Labels: enhancement

#6 - bdpy.stats.corrcoef is way too expensive

Issue - State: open - Opened by neo-mashiro about 4 years ago

#5 - how about adding new property of deleting?

Issue - State: open - Opened by kencan7749 about 4 years ago

#4 - change default argument of `meta_data_merge`

Pull Request - State: closed - Opened by kencan7749 about 4 years ago

#3 - iteration over a 0-d array

Issue - State: closed - Opened by zara6697 over 5 years ago - 12 comments

#2 - adjust python3 first time

Pull Request - State: closed - Opened by kencan7749 over 5 years ago

#1 - Install does not work with python3

Issue - State: closed - Opened by SylvainLan over 6 years ago - 1 comment