JuliaIO/HDF5.jl issues and pull requests

#1085 - Fix #1083 maxdims -> max_dims in dataspace documentation

Pull Request - State: closed - Opened by mkitti over 1 year ago

#1084 - Using `Type` and `Dataspace` in `create_dataset()`

Issue - State: closed - Opened by NuCO-UNM over 1 year ago - 2 comments

#1083 - `maxdims` or `max_dims` in `dataspace()`

Issue - State: closed - Opened by NuCO-UNM over 1 year ago - 1 comment

#1082 - Encoding/Decoding vector of Datetimes

Issue - State: open - Opened by cpaniaguam over 1 year ago - 5 comments

#1081 - HDF5.jl logo not optimal for dark mode

Issue - State: closed - Opened by sloede over 1 year ago - 5 comments

#1080 - ERROR: LoadError: UndefVarError: `libhdf5` not defined in Julia 1.10 DEV

Issue - State: open - Opened by truedichotomy over 1 year ago - 1 comment

#1079 - Crash with system-provided OpenMPI and HDF5_jll v1.14

Issue - State: open - Opened by mfsch over 1 year ago - 6 comments

#1078 - Simplify formatter check

Pull Request - State: closed - Opened by simonbyrne over 1 year ago

#1077 - Provide high level syntax for dealing with HDF5 files in memory

Pull Request - State: closed - Opened by mkitti over 1 year ago

#1076 - Wriring array of tuples fails

Issue - State: open - Opened by sairus7 over 1 year ago - 6 comments

#1075 - Fix _typed_load fast path for Julia 1.10 (currently nightly)

Pull Request - State: closed - Opened by mkitti over 1 year ago - 6 comments

#1074 - release-0.16 branch created

Issue - State: closed - Opened by mkitti over 1 year ago - 1 comment

#1073 - [CI] Extend integration timeout to 30 min

Pull Request - State: closed - Opened by mkitti over 1 year ago

#1072 - Handle partial chunks

Pull Request - State: closed - Opened by 0 over 1 year ago - 5 comments

#1071 - Docstrings for the function copy_object

Pull Request - State: closed - Opened by linwaytin over 1 year ago - 7 comments

#1070 - Copy a group of data from a file to another

Issue - State: closed - Opened by linwaytin over 1 year ago - 5 comments

#1069 - Fixes create_dataset for compound types

Pull Request - State: closed - Opened by tamasgal over 1 year ago - 8 comments

#1068 - Creating compound datasets is not working

Issue - State: closed - Opened by tamasgal over 1 year ago - 4 comments

#1067 - Functional API with Strings / variable-size strings

Pull Request - State: closed - Opened by mkitti over 1 year ago - 2 comments

#1066 - Write out string attribute as ascii

Issue - State: closed - Opened by lucasbanting over 1 year ago - 5 comments

#1065 - compat entry for HDF5_jll

Issue - State: closed - Opened by cgarling over 1 year ago - 10 comments
Labels: binary

#1064 - 0.17 breaking changes

Issue - State: closed - Opened by mkitti over 1 year ago - 23 comments

#1063 - Update Project.toml to 0.16.15

Pull Request - State: closed - Opened by mkitti over 1 year ago

#1062 - MPI support via package extensions (weak dependency)

Pull Request - State: closed - Opened by ranocha over 1 year ago - 26 comments

#1061 - Use Preferences for using custom hdf5 library

Pull Request - State: closed - Opened by JoshuaLampert over 1 year ago - 45 comments

#1060 - Tuple support

Pull Request - State: closed - Opened by lxvm over 1 year ago - 1 comment

#1059 - Update docs on system-provided MPI

Pull Request - State: closed - Opened by JoshuaLampert over 1 year ago

#1058 - enable dependabot for GitHub actions

Pull Request - State: closed - Opened by ranocha over 1 year ago

#1057 - Bump version

Pull Request - State: closed - Opened by simonbyrne over 1 year ago - 1 comment

#1056 - use Cstring in ccall

Pull Request - State: closed - Opened by simonbyrne over 1 year ago - 3 comments

#1055 - Unexpected create_group key from readdlm string data

Issue - State: closed - Opened by Jerboa-app over 1 year ago - 5 comments

#1054 - Update HDF5_jll compat to 1.14, bump version number

Pull Request - State: closed - Opened by mkitti over 1 year ago - 1 comment

#1053 - Test HDF5 1.14.0 from BinaryBuilder

Issue - State: closed - Opened by mkitti over 1 year ago - 25 comments

#1052 - docs: mention that low-level functions are in API submodule

Pull Request - State: closed - Opened by jwahlstrand over 1 year ago - 1 comment

#1051 - Always load even if deps aren't satisfied

Pull Request - State: closed - Opened by jpsamaroo over 1 year ago - 1 comment

#1050 - Not compatible with `TerminalMenus` in the stdlib

Issue - State: closed - Opened by jonniediegelman over 1 year ago - 1 comment

#1049 - Implement try_close_finalizer, fix #1048

Pull Request - State: closed - Opened by mkitti over 1 year ago - 6 comments

#1048 - Finalizer error when rapidly writing to HDF5

Issue - State: closed - Opened by TacHawkes over 1 year ago - 28 comments
Labels: multithreading

#1047 - fix implicit OrderedCollections dependency on FileIO

Pull Request - State: closed - Opened by simonbyrne over 1 year ago

#1046 - OrderedCollections, an implicit dependency

Issue - State: closed - Opened by vadim-z over 1 year ago - 4 comments

#1045 - Create a channel to iterate attributes

Pull Request - State: closed - Opened by mkitti over 1 year ago - 7 comments

#1044 - link via doxygen tags

Pull Request - State: closed - Opened by simonbyrne over 1 year ago - 12 comments

#1043 - Parse doxygen tag files

Pull Request - State: closed - Opened by mkitti over 1 year ago - 4 comments

#1042 - some fixes for docs

Pull Request - State: closed - Opened by simonbyrne over 1 year ago

#1041 - Update docs/Manifest.toml for H5Zblosc v0.1.1

Pull Request - State: closed - Opened by mkitti over 1 year ago

#1040 - Bump H5Zblosc version to 0.1.1

Pull Request - State: closed - Opened by mkitti over 1 year ago - 2 comments

#1039 - Juliacon 2023?

Issue - State: closed - Opened by mkitti over 1 year ago - 13 comments

#1038 - Clean up MPI

Pull Request - State: closed - Opened by simonbyrne over 1 year ago

#1037 - Switch to Preferences for using system hdf5

Issue - State: closed - Opened by simonbyrne over 1 year ago - 8 comments

#1036 - add branch protection to master

Issue - State: closed - Opened by simonbyrne over 1 year ago - 1 comment

#1035 - close property lists, simplify mpio test

Pull Request - State: closed - Opened by simonbyrne over 1 year ago
Labels: MPI

#1034 - add missing docstring for Group

Pull Request - State: closed - Opened by simonbyrne over 1 year ago

#1033 - libhdf5 not found when importing a package that depends on HDF5

Issue - State: closed - Opened by rkube over 1 year ago - 3 comments

#1032 - correct docs on JULIA_HDF5_PATH search path

Pull Request - State: closed - Opened by stevengj over 1 year ago - 1 comment

#1031 - Add initial support for H5Dchunk_iter

Pull Request - State: closed - Opened by mkitti over 1 year ago - 10 comments

#1030 - HDF5 1.14 support

Issue - State: open - Opened by mkitti over 1 year ago - 1 comment

#1029 - Change to new documentation links

Issue - State: open - Opened by mkitti almost 2 years ago - 1 comment
Labels: docs

#1028 - fix invalidations from loading LoopVectorization.jl

Pull Request - State: closed - Opened by ranocha almost 2 years ago

#1027 - Make `begin` as the first index of a `Dataset` work

Pull Request - State: closed - Opened by machakann almost 2 years ago - 7 comments

#1026 - Remove use of `tempname()` from `setindex!` of an `AttributeDict`

Pull Request - State: closed - Opened by nhz2 almost 2 years ago - 6 comments

#1025 - Merge strategy

Issue - State: open - Opened by mkitti almost 2 years ago

#1024 - API Lock Preferences

Pull Request - State: open - Opened by mkitti almost 2 years ago - 1 comment

#1023 - Fix virtual dataset tests, from mkitti/api_lock_preferences

Pull Request - State: closed - Opened by mkitti almost 2 years ago - 2 comments

#1022 - API Lock Preferences

Pull Request - State: closed - Opened by mkitti almost 2 years ago - 6 comments

#1021 - add lock around all API calls

Pull Request - State: closed - Opened by simonbyrne almost 2 years ago - 12 comments
Labels: multithreading

#1020 - Add JuliaFormatterTool and format.jl script

Pull Request - State: closed - Opened by mkitti almost 2 years ago - 2 comments

#1019 - Fix virtual dataset tests

Pull Request - State: closed - Opened by mkitti almost 2 years ago - 3 comments

#1018 - enable tests for virtual datasets

Pull Request - State: closed - Opened by simonbyrne almost 2 years ago - 1 comment

#1017 - Update HISTORY.md

Pull Request - State: closed - Opened by musm almost 2 years ago

#1016 - Correct readme link for build instructions

Pull Request - State: closed - Opened by musm almost 2 years ago

#1015 - Better error messages when trying to use MPI without a compatible binary

Issue - State: open - Opened by simonbyrne almost 2 years ago - 3 comments
Labels: MPI

#1014 - More informative errors when missing a filter

Pull Request - State: closed - Opened by nhz2 almost 2 years ago - 5 comments

#1013 - Add built-in support to write compound data types

Pull Request - State: closed - Opened by tamasgal about 2 years ago - 38 comments

#1012 - Add virtual dataset support

Pull Request - State: closed - Opened by simonbyrne about 2 years ago - 7 comments

#1011 - add BlockRange object to represent a dimension of a hyperslab

Pull Request - State: closed - Opened by simonbyrne about 2 years ago - 10 comments

#1010 - add support for read-only s3 virtual driver

Pull Request - State: closed - Opened by gszep about 2 years ago - 11 comments

#1009 - Add Invalidations.yml [ci skip] [skip tests]

Pull Request - State: closed - Opened by ranocha about 2 years ago

#1003 - cleanup test files

Pull Request - State: closed - Opened by t-bltg about 2 years ago - 3 comments

#990 - Finalizers cause exception_access_violation while using HDF5 from a thread.

Issue - State: closed - Opened by mkitti about 2 years ago - 9 comments
Labels: multithreading

#977 - haskey edge cases

Issue - State: open - Opened by simonbyrne over 2 years ago - 5 comments
Labels: bug

#946 - Views for Dataset and Attribute; VirtualSource

Issue - State: open - Opened by mkitti over 2 years ago - 1 comment
Labels: dataset

#940 - Vary compression factor "blosc" does not make a difference above zero, is this expected?

Issue - State: open - Opened by StefanPofahl over 2 years ago - 12 comments
Labels: upstream, filters

#931 - Request for improved documentation: Array of String

Issue - State: open - Opened by StefanPofahl over 2 years ago - 8 comments
Labels: strings

#930 - HDF5.Dataset as an AbstractArray

Issue - State: open - Opened by mkitti over 2 years ago - 7 comments
Labels: dataset, indexing

#871 - Installing HDF5.jl on armv7l 32 bit

Issue - State: open - Opened by sairus7 almost 3 years ago - 2 comments
Labels: binary

#870 - Installing HDF5.jl on ARM M1

Issue - State: closed - Opened by tamasgal almost 3 years ago - 21 comments

#869 - c-indexing and dimension ordering in `attach_scale` function

Issue - State: open - Opened by Chiil almost 3 years ago - 2 comments
Labels: dimension-scale

#862 - create_dset triggers race condition

Issue - State: closed - Opened by tbenst about 3 years ago - 2 comments

#859 - Empty (extensible) dataset cannot be read back

Issue - State: closed - Opened by tamasgal about 3 years ago - 1 comment

#857 - Read all attributes into a dictionary (or structure)

Issue - State: closed - Opened by jpmorr about 3 years ago - 2 comments

#853 - safe multi-threaded writing

Issue - State: closed - Opened by tbenst about 3 years ago - 5 comments
Labels: enhancement, multithreading

#852 - Finalizing correctly when using MPI

Issue - State: closed - Opened by calebwin about 3 years ago - 1 comment
Labels: MPI

#850 - libhdf5 not defnied on freebsd13

Issue - State: open - Opened by Jona-Engel about 3 years ago - 1 comment
Labels: binary

#835 - Crash when using from multiple threads

Issue - State: closed - Opened by jw3126 over 3 years ago - 12 comments
Labels: multithreading

#827 - trying to write BitArray{1} throws exception

Issue - State: open - Opened by ilia-kats over 3 years ago - 17 comments
Labels: bug, datatype

#826 - boolean arrays incompatible with h5py

Issue - State: open - Opened by ilia-kats over 3 years ago - 1 comment
Labels: bug, datatype

#822 - using `write` with compression fails

Issue - State: open - Opened by jebej over 3 years ago - 4 comments
Labels: dataset

#821 - Wrong CSET cause failure to write to already-created attribute

Issue - State: open - Opened by JiangXL over 3 years ago - 3 comments
Labels: bug, strings, datatype

#819 - No Intuitive Way to Write Compound Data Types

Issue - State: open - Opened by nicrummel over 3 years ago - 9 comments
Labels: question, docs, datatype

#818 - Writing fixed width strings is tricky

Issue - State: open - Opened by david-macmahon over 3 years ago - 2 comments
Labels: strings, datatype

GitHub / JuliaIO/HDF5.jl issues and pull requests