Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / JuBiotech/bletl issues and pull requests

#76 - Bump codecov/codecov-action from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, github_actions

#75 - Fix bug with `find_do_peak(delay_b)` kwarg

Pull Request - State: closed - Opened by lisaa2504 3 months ago - 3 comments
Labels: bug

#74 - Detect XT file types in parser selection

Pull Request - State: closed - Opened by michaelosthege 4 months ago
Labels: enhancement, github_actions

#73 - Bump contributor-assistant/github-action from 2.6.0 to 2.6.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions

#72 - Bump contributor-assistant/github-action from 2.5.1 to 2.6.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions

#70 - Parsing error with 48 well plate and robotics but no microfluidics

Issue - State: closed - Opened by sleweke-bayer 6 months ago - 1 comment
Labels: bug

#69 - Bump contributor-assistant/github-action from 2.4.0 to 2.5.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, github_actions

#68 - Deal with calibr8 API change

Pull Request - State: closed - Opened by michaelosthege 8 months ago

#67 - Update df creation in helper function

Pull Request - State: closed - Opened by rebeccahamel 8 months ago - 4 comments

#66 - Deal with calibr8 deprecation warning

Issue - State: closed - Opened by rebeccahamel 8 months ago

#65 - Bump contributor-assistant/github-action from 2.3.2 to 2.4.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, github_actions

#64 - Bump contributor-assistant/github-action from 2.3.1 to 2.3.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, github_actions

#63 - Pandas deprecation FutureWarning for convert_dtype

Issue - State: closed - Opened by sdlane-lbl 12 months ago - 1 comment
Labels: good first issue

#62 - Bump pre-commit/action from 3.0.0 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#61 - Bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#60 - Add CLA and cla-assistant workflow

Pull Request - State: closed - Opened by michaelosthege about 1 year ago - 1 comment

#59 - Add license notice to primary init file

Pull Request - State: closed - Opened by michaelosthege about 1 year ago - 4 comments

#58 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#57 - check license file

Issue - State: closed - Opened by lhelleckes about 1 year ago

#56 - Update readthedocs config to new config spec

Pull Request - State: closed - Opened by michaelosthege about 1 year ago - 1 comment

#55 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, github_actions

#53 - Comments bleeding into measurement lines break parsing

Issue - State: open - Opened by michaelosthege over 1 year ago
Labels: bug

#52 - Bump pre-commit/action from 2.0.0 to 3.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, github_actions

#51 - Bump codecov/codecov-action from 1 to 3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, github_actions

#50 - Bump actions/checkout from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, github_actions

#49 - Bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, github_actions

#48 - Add dependabot

Pull Request - State: closed - Opened by michaelosthege over 1 year ago - 1 comment

#47 - Drop filtersets with non-monotonic time

Pull Request - State: closed - Opened by michaelosthege over 1 year ago - 1 comment
Labels: bug

#46 - Don't return `bldata.metadata` as a defaultdict

Issue - State: closed - Opened by michaelosthege over 1 year ago
Labels: bug, good first issue

#45 - Include cycle number in comments tables

Issue - State: closed - Opened by michaelosthege over 1 year ago
Labels: enhancement

#44 - Drop support for PyMC <5

Pull Request - State: closed - Opened by michaelosthege over 1 year ago

#43 - Treat reservoir ID in fluidics as int

Pull Request - State: closed - Opened by michaelosthege over 1 year ago - 2 comments
Labels: enhancement

#42 - Cycle count not uniform in .fluidics and .parse

Issue - State: closed - Opened by katroh over 1 year ago - 1 comment
Labels: bug, documentation

#41 - Add CI step to twine check and fix errors

Pull Request - State: closed - Opened by michaelosthege over 1 year ago
Labels: bug

#40 - Fix all typing errors and run mypy in pre-commit

Pull Request - State: closed - Opened by michaelosthege over 1 year ago - 1 comment
Labels: enhancement

#39 - Use alphanumeric well IDs in `.fluidics` DataFrame index

Pull Request - State: closed - Opened by michaelosthege over 1 year ago - 1 comment
Labels: enhancement, help wanted

#38 - Name of well not in dataframe when .fluidics is used

Issue - State: closed - Opened by katroh over 1 year ago

#37 - Ensure pandas 2 compatibility

Pull Request - State: closed - Opened by michaelosthege almost 2 years ago - 1 comment
Labels: enhancement

#36 - Update isort

Pull Request - State: closed - Opened by michaelosthege almost 2 years ago - 1 comment

#35 - Parsing of raw data containing duplication artifacts fails

Issue - State: closed - Opened by michaelosthege about 2 years ago
Labels: bug

#34 - Increase parsing robustness

Pull Request - State: closed - Opened by michaelosthege about 2 years ago - 1 comment
Labels: bug

#33 - Support Python 3.11

Pull Request - State: closed - Opened by michaelosthege about 2 years ago - 1 comment
Labels: enhancement

#32 - Drop PyMC3 compatibility in favor of PyMC v5

Pull Request - State: closed - Opened by michaelosthege about 2 years ago - 6 comments
Labels: bug, enhancement

#31 - Give more instructive error message on attempts to parse unsupported file formats

Issue - State: open - Opened by michaelosthege about 2 years ago
Labels: good first issue

#30 - Fix typo in docstring

Pull Request - State: closed - Opened by simoneschito over 2 years ago

#29 - Typo in docs

Issue - State: closed - Opened by simoneschito over 2 years ago

#28 - Create a `.zenodo.json` to get Zenodo metadata right

Issue - State: open - Opened by michaelosthege over 2 years ago
Labels: enhancement

#27 - Avoid deprecated pandas method and bump version

Pull Request - State: closed - Opened by michaelosthege over 2 years ago - 1 comment
Labels: bug

#26 - Check availability of filtersets (closes #24)

Pull Request - State: closed - Opened by LarsHalle over 2 years ago - 1 comment

#25 - Add test dataset and regression test for #24

Pull Request - State: closed - Opened by michaelosthege over 2 years ago - 1 comment
Labels: bug

#24 - Key Error with unclear source

Issue - State: closed - Opened by fisseb4 over 2 years ago - 4 comments
Labels: bug

#23 - Upgrade PyMC dependencies for testing

Pull Request - State: closed - Opened by michaelosthege over 2 years ago - 1 comment

#22 - Fix import compatibility

Pull Request - State: closed - Opened by michaelosthege over 2 years ago - 1 comment
Labels: bug

#21 - Update citation instructions

Pull Request - State: closed - Opened by michaelosthege almost 3 years ago - 1 comment

#20 - updated notebook 4

Pull Request - State: closed - Opened by Y0dler almost 3 years ago - 3 comments

#19 - Automate consistent code style

Pull Request - State: closed - Opened by michaelosthege almost 3 years ago - 1 comment

#18 - Add pre-commit to normalize code style

Issue - State: closed - Opened by michaelosthege almost 3 years ago

#17 - New lot-no. 2112101 leads to error while using bletl.parse()

Issue - State: closed - Opened by LarsHalle almost 3 years ago - 2 comments

#16 - Pandas deprecation FutureWarning for .append

Issue - State: closed - Opened by dcnadler almost 3 years ago - 1 comment

#15 - Refactor for PyMC `4.0.0b2` compatibility of `bletl.growth`

Pull Request - State: closed - Opened by michaelosthege almost 3 years ago - 2 comments
Labels: enhancement

#14 - Make `bletl.growth` compatible with PyMC `4.0.0b2`

Issue - State: closed - Opened by michaelosthege almost 3 years ago
Labels: enhancement

#13 - Set seeds in flaky test & make parsing more robust

Pull Request - State: closed - Opened by michaelosthege about 3 years ago - 1 comment
Labels: bug

#12 - Unknown `REFOVERLD` value in measurement row breaks parsing

Issue - State: closed - Opened by michaelosthege about 3 years ago
Labels: bug

#10 - Add more motivation

Pull Request - State: closed - Opened by michaelosthege about 3 years ago

#9 - Grab reference gain/value metadata also for custom-named filtersets

Pull Request - State: closed - Opened by michaelosthege about 3 years ago - 1 comment
Labels: bug

#7 - Support Python 3.10

Pull Request - State: closed - Opened by michaelosthege over 3 years ago - 1 comment
Labels: enhancement

#6 - Parsing of Datasets from two different BioLectors leads to non-monotonic x

Issue - State: closed - Opened by lhelleckes over 3 years ago - 1 comment

#5 - Rename and require σ kwarg and use more conservative guesses for initialization

Pull Request - State: closed - Opened by michaelosthege over 3 years ago - 1 comment

#4 - Tests and robustness for the growth submodule

Pull Request - State: closed - Opened by michaelosthege over 3 years ago - 1 comment
Labels: bug, enhancement

#3 - Add `mu_0` option for `fit_mu_t`

Issue - State: closed - Opened by michaelosthege over 3 years ago
Labels: enhancement

#2 - Change `get_mue` signature to accept numpy arrays

Issue - State: open - Opened by michaelosthege over 3 years ago
Labels: enhancement

#1 - Add GitHub CI

Pull Request - State: closed - Opened by michaelosthege over 3 years ago
Labels: enhancement