Ecosyste.ms: Issues

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GitHub / JinmiaoChenLab/GraphST issues and pull requests

#42 - Problems related to the adjacency matrix:

Issue - State: open - Opened by Kanxiing about 2 months ago

#40 - Error while importing GraphST, No module named 'ot'

Issue - State: closed - Opened by niklasbinder 5 months ago - 2 comments

#38 - Normalization issue on Stereo-seq tutorial

Issue - State: open - Opened by tvegawaichman 6 months ago

#36 - where can i get Mouse embryo dataset?

Issue - State: open - Opened by amssljc 7 months ago - 1 comment

#35 - Maximum number of cells tested by GraphST

Issue - State: open - Opened by rocketeer1998 8 months ago - 1 comment

#34 - specify batch size

Issue - State: open - Opened by jairaj-mathur 9 months ago - 1 comment

#33 - Email address update

Issue - State: open - Opened by longyahui 9 months ago

#32 - take 3D spots position into account

Issue - State: open - Opened by wanghf810501 10 months ago - 1 comment

#30 - Adaptation for VisiumHD?

Issue - State: closed - Opened by Rafael-Silva-Oliveira 10 months ago - 1 comment

#29 - Question for integrating different sources of ST and scRNA-seq data

Issue - State: open - Opened by Fanyu000 10 months ago - 2 comments

#28 - Can GraphST be applied for merfish?

Issue - State: open - Opened by Byronxy 11 months ago - 1 comment

#27 - Use latent embeddings for clustering

Issue - State: open - Opened by aelhossiny 11 months ago - 1 comment

#26 - TypeError: invalid data type for einsum"

Issue - State: closed - Opened by aelhossiny 11 months ago - 1 comment

#25 - No file as scalefactors_json.json

Issue - State: open - Opened by mangochiral 11 months ago - 3 comments

#23 - Question with mouse olfactory bulb Stereo-seq data

Issue - State: open - Opened by zhaozhenxing0 11 months ago - 2 comments

#22 - Does GraphST work on M2 Mac?

Issue - State: open - Opened by dolchan 12 months ago - 2 comments

#21 - why deconvolution for adata_sc?

Issue - State: open - Opened by UnseenAnchor about 1 year ago - 1 comment

#20 - How to use mclust as clustering method

Issue - State: open - Opened by ShaowenJ about 1 year ago - 1 comment

#19 - The lack of spatial location information in dataset

Issue - State: open - Opened by tqwang743 about 1 year ago - 2 comments

#17 - clustering bug

Issue - State: open - Opened by wdb-web over 1 year ago - 1 comment

#16 - Question regarding normalization

Issue - State: open - Opened by tvegawaichman over 1 year ago - 3 comments

#15 - Is mclust supposed to be slow?

Issue - State: closed - Opened by legbar over 1 year ago

#14 - GraphST with multiple samples, general question

Issue - State: open - Opened by kguion1 over 1 year ago - 3 comments

#12 - GraphST for horizontal integration

Issue - State: open - Opened by ciciQ777 over 1 year ago - 2 comments

#11 - Question Regarding Distance obsp

Issue - State: open - Opened by tvegawaichman over 1 year ago - 2 comments

#10 - Question with horizontal integration

Issue - State: open - Opened by RubyLiu-2 over 1 year ago - 1 comment

#9 - Color error in sc.pl.embedding()

Issue - State: closed - Opened by Tripfantasy almost 2 years ago - 1 comment

#8 - issues with installation

Issue - State: open - Opened by JLiLab almost 2 years ago - 5 comments

#7 - The different results when i tried to cluster DLPFC with GraphST

Issue - State: closed - Opened by tqwang743 almost 2 years ago - 3 comments

#6 - Question for hyperparameters

Issue - State: closed - Opened by zy-fang about 2 years ago - 2 comments

#5 - Cannot find file scalefactors_json.json when running tutorial 1.

Issue - State: closed - Opened by JINJINT over 2 years ago - 2 comments

#4 - Create LICENSE

Pull Request - State: open - Opened by longyahui over 2 years ago

#3 - Question for Github Code License

Issue - State: open - Opened by JianingYao over 2 years ago - 1 comment