Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / JingyiGF/HERBS issues and pull requests

#61 - Virus coordinates reference point

Issue - State: open - Opened by sophie-march 7 months ago

#60 - Neuropixels 2.0 support

Issue - State: open - Opened by chris-angeloni 9 months ago

#59 - Unable to track probes without fixed lengths

Issue - State: open - Opened by wonicorn 11 months ago - 1 comment

#58 - Understanding vis_data dictionary

Issue - State: open - Opened by RejwanSalih 11 months ago - 2 comments

#56 - Unable to view multiple scenes from .czi file

Issue - State: closed - Opened by wonicorn 12 months ago - 20 comments

#53 - Cannot see layers after load a proyect

Issue - State: open - Opened by Gfernandezv about 1 year ago - 2 comments

#50 - Unable to load Allen Brain Atalas

Issue - State: closed - Opened by Chenyue-Doris over 1 year ago - 7 comments

#49 - Can't export probe information

Issue - State: open - Opened by MDrueke over 1 year ago - 1 comment

#48 - Simple question: 'Can not find the image' when loading projects

Issue - State: open - Opened by fergil-mills over 1 year ago - 3 comments

#47 - Unable to see Linear Silicon probe designer

Issue - State: closed - Opened by Irina8880 over 1 year ago

#44 - Saving transformation/registration points

Issue - State: open - Opened by nataliekoh over 1 year ago - 5 comments

#43 - confusion about coordinates

Issue - State: open - Opened by chongtianyifa almost 2 years ago - 9 comments

#42 - Delete anchor points during atlas alignment

Issue - State: open - Opened by shunnnli almost 2 years ago - 5 comments

#41 - get brain region acronym per recording site

Issue - State: open - Opened by aeazraoui almost 2 years ago - 2 comments

#40 - Unable to load probes or projects containing probes

Issue - State: closed - Opened by AutomatedOlfactoryBehaviour almost 2 years ago - 4 comments

#39 - Unable to process downloaded allen mice atlas

Issue - State: open - Opened by WenhaoLiu0218 almost 2 years ago - 5 comments

#38 - wrong probe insertion coordinates

Issue - State: open - Opened by KacperKon almost 2 years ago - 4 comments

#37 - Unable to save project with virus objects

Issue - State: closed - Opened by nataliekoh almost 2 years ago - 7 comments

#36 - Error when merging probes

Issue - State: closed - Opened by nataliekoh almost 2 years ago - 1 comment

#35 - Extracting probe information

Issue - State: closed - Opened by nataliekoh almost 2 years ago - 1 comment

#34 - How can I fix the rotation(yaw and pitch direction) I chose when I scroll along coronal sections?

Issue - State: closed - Opened by yqwang1 about 2 years ago - 3 comments
Labels: enhancement

#33 - Bregma definition

Issue - State: open - Opened by arturoptophys about 2 years ago - 6 comments
Labels: enhancement

#30 - Error in probe info

Issue - State: closed - Opened by mwawra about 2 years ago - 6 comments
Labels: bug

#29 - Remove obj_visibility from object_ctrl and remove check for obj_visibility in herbsgui

Pull Request - State: closed - Opened by mwawra about 2 years ago - 1 comment

#28 - Unable to load project with cell object

Issue - State: closed - Opened by mwawra about 2 years ago - 7 comments

#27 - Error when "merging" a single piece of a drawing

Issue - State: closed - Opened by mwawra about 2 years ago - 3 comments

#26 - Implement unmerge of pieces of probes, cells, virus, contours

Pull Request - State: closed - Opened by mwawra about 2 years ago

#25 - Unable to download Allen Mice Atlas

Issue - State: open - Opened by LeoJuh about 2 years ago - 13 comments
Labels: bug

#24 - Always load "Plus" as blend method for the atlas

Pull Request - State: closed - Opened by mwawra about 2 years ago - 1 comment

#23 - Issues with registering (triangulation) histology slices to atlas

Issue - State: closed - Opened by nataliekoh about 2 years ago - 9 comments

#22 - Error when overlay atlas slice onto histological image

Issue - State: open - Opened by Virginia9733 about 2 years ago - 3 comments
Labels: long term development

#21 - unmerging

Issue - State: closed - Opened by vncntprvst about 2 years ago - 10 comments

#20 - Exporting data and figures

Issue - State: open - Opened by vncntprvst about 2 years ago - 3 comments
Labels: enhancement

#18 - Possibility of running HERBS via a GPU

Issue - State: open - Opened by JHartig over 2 years ago - 1 comment
Labels: long term development

#16 - Project does not load

Issue - State: open - Opened by torbenott over 2 years ago - 28 comments

#15 - Probe data not exported

Issue - State: closed - Opened by torbenott over 2 years ago - 1 comment

#14 - Probe does not show in GUI

Issue - State: open - Opened by torbenott over 2 years ago - 2 comments

#12 - Issue downloading Allen mice atlas

Issue - State: open - Opened by dcupolillo over 2 years ago - 9 comments

#11 - Unable to load histology image - object of type 'NoneType' has no len()

Issue - State: open - Opened by JHartig over 2 years ago - 12 comments

#8 - Unable to load histology image

Issue - State: open - Opened by ishiangoli over 2 years ago - 14 comments

#7 - "Please pre-process the raw data of your desired atlas"

Issue - State: closed - Opened by ishiangoli over 2 years ago - 11 comments

#6 - Unclear how to register multiple histology slices

Issue - State: open - Opened by zoepearce over 2 years ago - 9 comments

#5 - Issues installing HERBS using MacBook M1 chip

Issue - State: open - Opened by ishiangoli over 2 years ago - 23 comments

#4 - Can't install on Windows 11 with python>3.8

Issue - State: closed - Opened by mwawra over 2 years ago - 5 comments

#3 - Python error after deleting layered histology image

Issue - State: closed - Opened by torbenott over 2 years ago - 2 comments