Jhsmit/PyHDX issues and pull requests

#264 - Update resources for Panel 0.13.0

Pull Request - State: closed - Opened by philippjfr almost 3 years ago - 1 comment

#263 - Pyhdx process cli interface

Issue - State: open - Opened by Jhsmit almost 3 years ago
Labels: enhancement

#262 - Allow other data formats as input

Issue - State: open - Opened by Jhsmit almost 3 years ago
Labels: enhancement

#260 - prepare for panel 0.13.0

Pull Request - State: closed - Opened by Jhsmit almost 3 years ago

#259 - Fix pyhdx not working in chromium browsers

Pull Request - State: closed - Opened by Jhsmit almost 3 years ago

#258 - Batch input

Pull Request - State: closed - Opened by Jhsmit almost 3 years ago

#257 - Allow single fits

Pull Request - State: closed - Opened by Jhsmit almost 3 years ago

#255 - Async2

Pull Request - State: closed - Opened by Jhsmit almost 3 years ago

#254 - updated light theme css

Pull Request - State: closed - Opened by Jhsmit almost 3 years ago

#252 - Molstar v2

Pull Request - State: closed - Opened by Jhsmit almost 3 years ago

#250 - add py310 support

Pull Request - State: closed - Opened by Jhsmit about 3 years ago - 2 comments

#249 - Golden Template

Pull Request - State: closed - Opened by Jhsmit about 3 years ago - 1 comment

#248 - Adds PDBeMolstar viewer

Pull Request - State: closed - Opened by Jhsmit about 3 years ago - 1 comment

#246 - Async

Pull Request - State: closed - Opened by Jhsmit about 3 years ago

#243 - Add folding app

Pull Request - State: closed - Opened by Jhsmit about 3 years ago

#236 - fit result output include standard deviation of mse loss

Issue - State: open - Opened by Jhsmit over 3 years ago - 1 comment
Labels: enhancement, Fitting

#234 - Updated PyHDX web

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#233 - Initial guesses are slow

Issue - State: open - Opened by Jhsmit over 3 years ago - 1 comment
Labels: enhancement, discussion, Fitting, investigate

#231 - Allow CUDA and float dtype

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#228 - Updates to docstrings

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#227 - Refactor internal data objects to use pandas instead of numpy

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#226 - Allow earlier fits to be used as initial guesses

Issue - State: closed - Opened by Jhsmit over 3 years ago - 1 comment
Labels: enhancement, GUI, Fitting

#225 - Docs pdf

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#223 - Split regularization losses in web interface

Issue - State: closed - Opened by Jhsmit over 3 years ago - 1 comment

#219 - Cannot read back color .csv files

Issue - State: closed - Opened by Jhsmit over 3 years ago - 1 comment
Labels: bug

#216 - Dataset switching performance

Issue - State: closed - Opened by Jhsmit over 3 years ago - 2 comments
Labels: enhancement, GUI

#214 - updates to docs

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#212 - Fit result web

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#209 - partial fix of generating pdf output from fit result

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#207 - Update to versioneer

Pull Request - State: closed - Opened by Jhsmit over 3 years ago - 1 comment

#205 - Updated fileio functions

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#204 - Regualizers feedback

Issue - State: closed - Opened by Jhsmit over 3 years ago - 1 comment
Labels: enhancement, GUI

#202 - color transform as yaml

Issue - State: open - Opened by Jhsmit over 3 years ago - 1 comment
Labels: enhancement, GUI

#199 - Fit refactor

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#197 - Cleanup of repo

Pull Request - State: closed - Opened by Jhsmit almost 4 years ago

#194 - Relay error messages to log in GUI

Issue - State: open - Opened by Jhsmit almost 4 years ago - 1 comment
Labels: enhancement, GUI

#193 - Exported dataframes with r_numbers should have sequence information in them

Issue - State: open - Opened by Jhsmit almost 4 years ago - 2 comments
Labels: enhancement

#175 - Setting thresholds to zero on log scale

Issue - State: closed - Opened by Jhsmit almost 4 years ago - 1 comment
Labels: bug, GUI

#166 - Show thresholds does not work

Issue - State: closed - Opened by Jhsmit about 4 years ago - 3 comments
Labels: bug, GUI

#155 - Add deltaG graph to link x range

Issue - State: open - Opened by Jhsmit over 4 years ago
Labels: enhancement, GUI

#146 - Single app graph y label 'differences'

Issue - State: closed - Opened by Jhsmit over 4 years ago

#145 - KeyError linear colouring

Issue - State: closed - Opened by Jhsmit over 4 years ago
Labels: bug, GUI

#144 - Prolines in intitial guesses in global fit

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment

#141 - ValueError ' scores' occurs more than once

Issue - State: closed - Opened by Jhsmit over 4 years ago
Labels: bug, GUI

#140 - IndexError initial guess for wt avg fit

Issue - State: closed - Opened by Jhsmit over 4 years ago

#136 - Correct k_int for percentage D

Issue - State: open - Opened by Jhsmit over 4 years ago - 2 comments
Labels: enhancement, investigate

#132 - y axes log does not work with bokeh autoscale

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment
Labels: bug, GUI

#130 - pytorch diff eqns

Issue - State: open - Opened by Jhsmit over 4 years ago - 1 comment

#124 - [WARNING]: data mapping points must start with x=0 and end with x=1

Issue - State: closed - Opened by Jhsmit over 4 years ago - 2 comments
Labels: bug, GUI

#121 - default bounds on initial guess fitting are too narrow

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment

#120 - version from external package in development mode

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment

#115 - Long delay between progress bar 100% and result showing

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment
Labels: enhancement, GUI

#112 - Multiple views or DataSource

Issue - State: closed - Opened by Jhsmit over 4 years ago - 2 comments
Labels: enhancement, discussion, GUI

#105 - Error in Classification Control Panel

Issue - State: closed - Opened by Jhsmit over 4 years ago
Labels: bug, GUI

#97 - Fitting window needs a hover tool

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment
Labels: enhancement

#93 - Exposure slider resets x range

Issue - State: closed - Opened by Jhsmit over 4 years ago

#92 - Setting coverage figure x range

Issue - State: closed - Opened by Jhsmit over 4 years ago
Labels: enhancement

#81 - k_int vs kint

Issue - State: open - Opened by Jhsmit over 4 years ago
Labels: good first issue

#79 - export single letter aa codes

Issue - State: closed - Opened by Jhsmit over 4 years ago - 2 comments
Labels: enhancement

#72 - refactor internal time units to seconds

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment
Labels: enhancement

#70 - allow export of k_int

Issue - State: open - Opened by Jhsmit over 4 years ago - 2 comments
Labels: enhancement, GUI

#65 - negative value for first residue k_int

Issue - State: closed - Opened by Jhsmit over 4 years ago

#64 - transpose scores_peptides

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment
Labels: documentation, enhancement

#60 - check prolines in fraction for global fit model building

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment
Labels: bug, invalid

#57 - view vertical line in both plots during mouseover event

Issue - State: open - Opened by Jhsmit over 4 years ago - 2 comments
Labels: enhancement

#35 - unify API viewing fit result

Issue - State: closed - Opened by Jhsmit over 4 years ago
Labels: enhancement

GitHub / Jhsmit/PyHDX issues and pull requests