Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / JetBrains-Research/snakecharm issues and pull requests

#142 - Debugger for snakemake files

Issue - State: open - Opened by iromeo over 5 years ago - 2 comments

#140 - Inspection for top-level workdir section

Issue - State: closed - Opened by nikita-nazarov over 5 years ago
Labels: inspections

#109 - Warn user that they need to configure Python sdk with snakemake to enable all features

Issue - State: closed - Opened by iromeo over 5 years ago - 3 comments
Labels: usability problem

#100 - Find usages doesn't work for rules/checkpoints

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: codeInsight, subtask

#99 - Spellchecker doesn't check spelling in rules names

Issue - State: closed - Opened by iromeo over 5 years ago
Labels: inspections

#98 - Errors for 'run' section in checkpoint

Issue - State: closed - Opened by iromeo over 5 years ago
Labels: parsing

#97 - Keywords complete shouldn't be suggested in dot referenced expressions

Issue - State: closed - Opened by iromeo over 5 years ago
Labels: codeInsight

#96 - Parsing error when new line begins with a separator in argument list

Issue - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment
Labels: parsing, major

#95 - #93 Subworkflow rename bug

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#94 - #82 Resolve and completion for 'checkpoints' names

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#93 - Subworkflow rename bug

Issue - State: closed - Opened by nikita-nazarov over 5 years ago

#92 - #11 Code completon for subworkflow section names

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#91 - Issue 87

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago

#90 - Subworkflows support

Issue - State: closed - Opened by iromeo over 5 years ago

#89 - #88 Subworkflow inspections

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#88 - Subworflow redeclaration inspection

Issue - State: closed - Opened by iromeo over 5 years ago - 2 comments

#87 - Params completion/resolve doesn't work for checkpoint rules

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: codeInsight

#86 - #66 Subworkflow parsing errors

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago - 1 comment

#85 - Issue 43

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago

#84 - Do not highlight rule, checkpoint, subworkflow as keywords inside rule

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: syntaxHighlighting

#82 - Resolve/completion for `checkpoints` names

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: codeInsight

#81 - Issue 72

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago

#80 - Rename parser classes to smth more readable

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment

#79 - #77 Rewrite SmkShadowMultipleSettingsInspectionTest in cucumber

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#78 - #69 Input autocompletion bug

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#77 - Rewrite SmkShadowMultipleSettingsInspectionTest in cucumber

Issue - State: closed - Opened by iromeo over 5 years ago

#76 - #58 Inspection: trailing coma at the end of snakefile

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#75 - #73 Shadow settings documentation

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#74 - Issue 71

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago

#73 - Shadow settings documentation

Issue - State: closed - Opened by nikita-nazarov over 5 years ago - 2 comments

#72 - Keyword arguments duplication

Issue - State: closed - Opened by sharkovadarya over 5 years ago - 3 comments
Labels: inspections

#71 - Multiple declarations of the same section

Issue - State: closed - Opened by sharkovadarya over 5 years ago - 2 comments
Labels: inspections

#70 - NoClassDefFoundError: com/intellij/psi/util/PsiTreeUtilKt

Issue - State: closed - Opened by iromeo over 5 years ago - 3 comments
Labels: bug, critical

#69 - input autocompletion results in ": input"

Issue - State: closed - Opened by nikita-nazarov over 5 years ago - 1 comment
Labels: bug, critical

#67 - #31 Rule docstrings trigger a syntax error

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago

#66 - Subworkflow parsing errors

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: parsing, major, subtask

#65 - Inspection for `shadow` level values

Issue - State: closed - Opened by nikita-nazarov over 5 years ago
Labels: inspections

#64 - Feature/shadow settings inspection

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago - 1 comment

#63 - 'shadow' settings completion added with tests

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago - 1 comment

#62 - Refactor rules names resolve/completion and use `PySyntheticType` API

Issue - State: open - Opened by iromeo over 5 years ago
Labels: codeInsight, subtask

#61 - Completion false positives for snakemake.io, etc.

Issue - State: open - Opened by iromeo over 5 years ago - 1 comment
Labels: bug, codeInsight

#60 - Resolve/Completion for subworflows names

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: codeInsight, subtask

#59 - Resolve/completion for rules names

Issue - State: closed - Opened by iromeo over 5 years ago - 4 comments
Labels: codeInsight, subtask

#58 - Inspection: trailing comment at the end of Snakefile

Issue - State: closed - Opened by olegs over 5 years ago - 13 comments
Labels: inspections

#57 - Inspection: wildcards in shell script can be used only with `wildcards.` prefix.

Issue - State: closed - Opened by olegs over 5 years ago - 1 comment
Labels: subtask

#56 - Completion / Resolve for rules name in 'ruleorder' and 'localrules'

Issue - State: closed - Opened by iromeo over 5 years ago - 2 comments
Labels: codeInsight, subtask

#55 - Resolve/Completion after `rules.some_rule_name.`

Issue - State: closed - Opened by iromeo over 5 years ago - 4 comments
Labels: codeInsight, subtask

#54 - Issue 43

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment

#53 - Support highlighting for arguments of format strings

Issue - State: closed - Opened by iromeo over 5 years ago - 6 comments
Labels: syntaxHighlighting, subtask

#52 - First problem solution

Pull Request - State: closed - Opened by nikita-nazarov over 5 years ago - 1 comment

#51 - Test task 1: resolve and completion for rule names ('rules' object)

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago

#50 - Issue 48

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment

#49 - Issue 37

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment

#48 - Code inspection: multiple run or shell keywords

Issue - State: closed - Opened by sharkovadarya over 5 years ago
Labels: inspections

#47 - Issue 39

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment

#46 - Issue 38

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment

#45 - Issue 24

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment

#44 - Code Inspection: Resources must be int values

Issue - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment
Labels: wontfix, inspections

#43 - 'shell' section: resolve & completion for `params` args

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: codeInsight, subtask

#42 - Cucumber tests

Pull Request - State: closed - Opened by iromeo over 5 years ago

#41 - 'expand()' completion

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago

#40 - 'expand()' completion

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago - 1 comment

#39 - Inspection: The name foo is already used by another rule

Issue - State: closed - Opened by iromeo over 5 years ago
Labels: inspections

#38 - Inspection: positional argument follows keyword argument

Issue - State: closed - Opened by iromeo over 5 years ago
Labels: inspections

#36 - Issue 32

Pull Request - State: closed - Opened by sharkovadarya over 5 years ago

#35 - OpenWDL language support

Issue - State: open - Opened by iromeo over 5 years ago

#34 - IDEA CE 2019.1 : Plugin 'SnakeCharm' failed to initialize and will be disabled.

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: wontfix

#33 - Cannot execute `intellij:runIde`

Issue - State: closed - Opened by iromeo over 5 years ago - 1 comment
Labels: bug

#32 - Resolve 'expand' call to snakemake.io

Issue - State: closed - Opened by iromeo over 5 years ago
Labels: codeInsight, subtask

#31 - Rule docstrings trigger a syntax error

Issue - State: closed - Opened by wjv almost 6 years ago - 5 comments
Labels: parsing, major

#30 - Unexpected Indent error for multiline localrules, rulesorder

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: parsing, major

#29 - Do not parse/highlight as keywords several top level workflow params

Issue - State: closed - Opened by iromeo almost 6 years ago - 4 comments
Labels: bug, parsing, syntaxHighlighting

#28 - *.smk file not recognized as Snakemake files

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: bug

#27 - Lambda support for rule params

Issue - State: closed - Opened by iromeo almost 6 years ago - 2 comments
Labels: inspections

#26 - Code indentation fix in rules

Issue - State: open - Opened by iromeo almost 6 years ago - 19 comments
Labels: formatter

#25 - Run configuration for snakemake files

Issue - State: open - Opened by iromeo almost 6 years ago - 7 comments

#24 - Code Inspection Resources expects only named args

Issue - State: closed - Opened by iromeo almost 6 years ago
Labels: inspections

#23 - Publish plugin to plugins.jetbrains.com

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: major

#22 - Includes support

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: duplicate

#21 - *.rules files support

Issue - State: closed - Opened by iromeo almost 6 years ago - 2 comments

#20 - Includes support

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: codeInsight, major

#19 - *.rules files support

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: duplicate

#18 - Snakemake wrappers resolve/completion

Issue - State: open - Opened by iromeo almost 6 years ago - 10 comments
Labels: codeInsight

#17 - Implement PSI stubs for required elements

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: parsing

#16 - Multiline strings declaration support

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: parsing, critical

#15 - Rules and rule params folding support

Issue - State: closed - Opened by iromeo almost 6 years ago - 4 comments
Labels: syntaxHighlighting

#14 - Keywords: run, onerror, onsuccess, onstart should create new context

Issue - State: open - Opened by iromeo almost 6 years ago - 7 comments
Labels: codeInsight, inspections, parsing, depends on other issue

#13 - Support for: Input Functions and unpack()

Issue - State: open - Opened by iromeo almost 6 years ago
Labels: codeInsight, inspections

#12 - Completion for `shadow` level values

Issue - State: closed - Opened by iromeo almost 6 years ago - 3 comments
Labels: codeInsight

#11 - Code completion for subworkflow sections names

Issue - State: closed - Opened by iromeo almost 6 years ago - 4 comments
Labels: codeInsight

#10 - Show rule names, it's params names, workflow params in file structure

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment

#9 - CWL language support

Issue - State: open - Opened by iromeo almost 6 years ago - 1 comment

#8 - Code completion in python call params doesn't work (only keywords)

Issue - State: closed - Opened by iromeo almost 6 years ago - 2 comments
Labels: codeInsight

#7 - Completion for rule/workflow params keywords

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: codeInsight

#6 - Resolve/completion code insight for rules

Issue - State: closed - Opened by iromeo almost 6 years ago - 3 comments
Labels: compound task

#5 - Resolve/completion for `config` attrs

Issue - State: open - Opened by iromeo almost 6 years ago - 1 comment
Labels: codeInsight

#4 - Resolve/Completion for named args of input, output, params,...

Issue - State: closed - Opened by iromeo almost 6 years ago - 1 comment
Labels: codeInsight