Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / JetBrains-Research/snakecharm issues and pull requests

#557 - Wildcard not properly defined false warning when typing first input, then output section

Issue - State: closed - Opened by iromeo 4 months ago
Labels: inspections, pain_point, work in progress

#556 - Code completion for standard resources keys (mem_mb, etc.) + resource_scopes

Issue - State: open - Opened by iromeo 4 months ago - 2 comments
Labels: good_for_next_release

#555 - Support for Global workflow dependencies [8.0.0] syntax

Issue - State: closed - Opened by iromeo 4 months ago - 1 comment
Labels: good_for_next_release

#554 - Support for `storage` directive

Issue - State: closed - Opened by iromeo 4 months ago - 2 comments
Labels: good_for_next_release

#553 - Inject some modules in Snakefile file resolve scope w/o import declaration, e.g. os, sys,..

Issue - State: closed - Opened by iromeo 4 months ago
Labels: good_for_next_release

#552 - Unresolved `output` in rule imported from module

Issue - State: closed - Opened by iromeo 4 months ago - 1 comment

#551 - Support for `scattergather` directive

Issue - State: open - Opened by iromeo 4 months ago - 1 comment
Labels: good_for_next_release

#550 - Inspection False Positive: Unresolved reference: 'storage', 'github', 'gitfile', 'gitlab'

Issue - State: closed - Opened by iromeo 4 months ago - 1 comment
Labels: good_for_next_release

#549 - Inspection False Positive: Unresolved reference 'log'

Issue - State: open - Opened by iromeo 4 months ago - 1 comment
Labels: good_for_next_release

#548 - [8.3.0] Inspeciton False Positive: Unresolved reference for: lookup, evaluate, branch, collect, exists

Issue - State: closed - Opened by iromeo 4 months ago - 3 comments
Labels: good_for_next_release, work in progress

#547 - Parsing error in : input: '{ds}.bam'.format(ds=ds) for ds in DATASETS

Issue - State: open - Opened by iromeo 4 months ago - 1 comment

#546 - Inspection False Positive: Unresolved reference 'snakemake'

Issue - State: closed - Opened by iromeo 4 months ago - 1 comment
Labels: good_for_next_release

#545 - Allow access to module name obj through local variable:

Issue - State: open - Opened by iromeo 4 months ago
Labels: good_for_next_release

#543 - Inspection False Positive: Rule or Checkpoint name 'check1' has not been defined yet

Issue - State: open - Opened by iromeo 4 months ago
Labels: good_for_next_release

#542 - Inspection Error False Positive: Unresolved reference for `version` local function

Issue - State: open - Opened by iromeo 4 months ago - 1 comment
Labels: good_for_next_release

#541 - Inspection Error False Positive: Unresolved output for output local var

Issue - State: open - Opened by iromeo 4 months ago
Labels: good_for_next_release

#540 - Inspection error false positive: This rule name is already used by another rule declaration.

Issue - State: open - Opened by iromeo 4 months ago
Labels: good_for_next_release

#539 - Undeclared section threads warning should not be shown here

Issue - State: closed - Opened by iromeo 4 months ago - 1 comment
Labels: bug, good_for_next_release

#538 - Inspections: Warn if snakemake expects sections args to be on next line for multi line arguments

Issue - State: open - Opened by iromeo 4 months ago
Labels: inspections, good_for_next_release

#537 - Revise snakemake.io flags in 8.0

Issue - State: closed - Opened by iromeo 4 months ago - 1 comment

#534 - SlowOperations workaround in SmkFrameworkSettingsPanel

Issue - State: open - Opened by iromeo 4 months ago
Labels: major

#533 - SlowOperations workaround in ImplicitPySymbolsProvider

Issue - State: open - Opened by iromeo 4 months ago
Labels: major

#532 - SnakeCharm not compatible with PyCharm version 2024.2

Issue - State: closed - Opened by LottePronk 6 months ago - 5 comments
Labels: critical

#531 - Features/#500 add version warning

Pull Request - State: closed - Opened by Xewar313 9 months ago - 1 comment

#530 - Features/#527 last line comment error

Pull Request - State: closed - Opened by Xewar313 9 months ago

#529 - Features/#508 deprecation inspection

Pull Request - State: closed - Opened by Xewar313 9 months ago

#528 - Improve target rules support

Issue - State: open - Opened by Xewar313 10 months ago
Labels: good_for_next_release

#527 - Snakecharm marks error on comment in last line

Issue - State: closed - Opened by Xewar313 10 months ago - 1 comment

#526 - Multiple functions are not recognized by snakecharm

Issue - State: closed - Opened by Xewar313 10 months ago - 1 comment

#525 - Inspection: Cache and bechmark are not reported as an error

Issue - State: open - Opened by Xewar313 10 months ago - 3 comments
Labels: inspections, good_for_next_release

#524 - Snakecharm does not recognize localrule directive

Issue - State: closed - Opened by Xewar313 10 months ago - 2 comments

#523 - Gitfile command is not recognized by snakecharm

Issue - State: closed - Opened by Xewar313 10 months ago - 2 comments
Labels: good_for_next_release

#522 - Importing rules using github function does not work

Issue - State: closed - Opened by Xewar313 10 months ago - 2 comments
Labels: good_for_next_release

#521 - After using import, fuctions from other smk files are not detected

Issue - State: open - Opened by Xewar313 10 months ago - 2 comments
Labels: good_for_next_release

#520 - Section names cannot be resolved for rules after inheritance using use

Issue - State: open - Opened by Xewar313 10 months ago
Labels: good_for_next_release

#519 - Features/#515 improve rule declaration message

Pull Request - State: closed - Opened by Xewar313 10 months ago - 1 comment

#518 - Fix/#515 improve rule declaration message

Pull Request - State: closed - Opened by Xewar313 10 months ago

#517 - Completion for wrapper names rarely works

Issue - State: closed - Opened by iromeo 10 months ago

#516 - Fix/don't mention identifier when it was already defined

Pull Request - State: closed - Opened by Xewar313 10 months ago - 1 comment

#515 - Improve parser error message when rule/module is declared with name but lacks ':'

Issue - State: closed - Opened by Xewar313 10 months ago
Labels: bug, syntaxHighlighting, usability problem

#514 - Features/#513 pc 2024.1

Pull Request - State: closed - Opened by iromeo 10 months ago

#513 - PyCharm 2024.1 support

Issue - State: closed - Opened by iromeo 11 months ago - 5 comments
Labels: critical

#512 - Wildcard not defined in output of Target Rule

Issue - State: open - Opened by JoshLoecker about 1 year ago - 3 comments
Labels: waiting for reply

#511 - Unresolved reference 'snakemake'

Issue - State: closed - Opened by iquasere about 1 year ago - 5 comments
Labels: waiting for reply

#510 - [7.11] Resources scopes support

Issue - State: closed - Opened by iromeo about 1 year ago - 2 comments
Labels: work in progress

#508 - Show notice on deprecated features

Issue - State: closed - Opened by iromeo over 1 year ago - 4 comments

#507 - PyCharm 2023.3 Support

Issue - State: closed - Opened by iromeo over 1 year ago

#506 - Exception: "Access is allowed from write thread only" creating project in dumb mode

Issue - State: closed - Opened by iromeo almost 2 years ago - 2 comments

#505 - Current version of SnakeCharm is incompatible with PyCharm 2023.1

Issue - State: closed - Opened by KatSteinke almost 2 years ago - 2 comments
Labels: critical

#504 - JetBrains Gateway support

Issue - State: closed - Opened by ohickl about 2 years ago - 2 comments
Labels: waiting for reply

#503 - Make Snakecharm trusted plugins, even though it is provided not by JetBrains but by JetBrains Research.

Issue - State: closed - Opened by olegs about 2 years ago
Labels: usability problem

#502 - java.lang.RuntimeException: child must not be null: expression text [methylome]

Issue - State: open - Opened by iromeo about 2 years ago
Labels: bug

#501 - Current version of SnakeCharm is incompatible with PyCharm 2022.3

Issue - State: closed - Opened by KatSteinke about 2 years ago - 1 comment
Labels: critical

#498 - [7.0.0] `template_engine` future improvements:

Issue - State: open - Opened by iromeo over 2 years ago
Labels: codeInsight

#497 - [ 7.0.0] `template_engine:` basic support

Issue - State: closed - Opened by iromeo over 2 years ago
Labels: codeInsight, inspections, parsing

#496 - [7.9.0] Remove excluded names from completion list & resolve

Issue - State: closed - Opened by iromeo over 2 years ago
Labels: codeInsight

#495 - [7.9.0] Basic syntax for `exclude` syntax in use rules

Issue - State: closed - Opened by iromeo over 2 years ago
Labels: codeInsight, parsing

#492 - [6.14.0] Navigate to pin env, post-deployment script for Conda sections

Issue - State: open - Opened by iromeo over 2 years ago
Labels: codeInsight, navigation

#490 - new directive "retries"

Issue - State: closed - Opened by iromeo almost 3 years ago

#489 - ensure directive

Issue - State: closed - Opened by iromeo almost 3 years ago

#488 - Features/#487 2022.1

Pull Request - State: closed - Opened by iromeo almost 3 years ago

#487 - Make plugin compatible with PyCharm 2022.1

Issue - State: closed - Opened by bridgream almost 3 years ago - 3 comments
Labels: critical

#486 - Inspection for unresolved config keys

Issue - State: open - Opened by dakochik almost 3 years ago

#485 - Resolve/completion for 'config' methods

Issue - State: open - Opened by dakochik almost 3 years ago

#484 - Detection of working directory for resolving relative path

Issue - State: open - Opened by dakochik almost 3 years ago

#483 - No error of use rule redeclarton

Issue - State: open - Opened by iromeo about 3 years ago
Labels: bug, inspections

#482 - Warn of not all params are overriden in `params` section

Issue - State: open - Opened by iromeo about 3 years ago
Labels: codeInsight, inspections, good_for_next_release

#481 - Rule already used false positive

Issue - State: open - Opened by iromeo about 3 years ago
Labels: bug, codeInsight

#480 - Section names cannot be resolved for imported rules via use

Issue - State: open - Opened by iromeo about 3 years ago
Labels: codeInsight

#479 - Do not show rule or checkpoint might be not defined error in input functions

Issue - State: open - Opened by iromeo about 3 years ago - 1 comment
Labels: bug, inspections

#478 - Find usages of rule doesn't find it's usages in `use` statements

Issue - State: open - Opened by iromeo about 3 years ago
Labels: codeInsight

#477 - Rule name completion is missing in left part of 'rule use' although resolve works

Issue - State: open - Opened by iromeo about 3 years ago
Labels: bug, codeInsight

#476 - Inconsistency in Override / Overriden gutters behaviour:

Issue - State: open - Opened by iromeo about 3 years ago
Labels: bug, codeInsight

#475 - Lack of multi-resolve after `rules.` when a rule has several declarations

Issue - State: open - Opened by iromeo about 3 years ago
Labels: bug, codeInsight

#474 - Redeclaration gutters

Issue - State: open - Opened by iromeo about 3 years ago

#473 - "default_target:" directive support

Issue - State: closed - Opened by iromeo about 3 years ago

#472 - Inspection: not all syntax is allowed in sections with `cache:` directive

Issue - State: open - Opened by iromeo about 3 years ago
Labels: good_for_next_release

#471 - Provide documentation for known directives (sections types)

Issue - State: open - Opened by iromeo about 3 years ago
Labels: codeInsight, good_for_next_release

#470 - Support for: Using already existing named conda environments

Issue - State: open - Opened by iromeo about 3 years ago
Labels: codeInsight, good_for_next_release

#469 - Resolve for post-deployment scripts

Issue - State: open - Opened by iromeo about 3 years ago
Labels: good_for_next_release

#468 - 'prefix:' keyword support for modules

Issue - State: open - Opened by iromeo about 3 years ago - 1 comment

#467 - 'copy-minimal' shadow section missing in completion

Issue - State: closed - Opened by iromeo about 3 years ago - 1 comment

#466 - Features/#464 module resolve

Pull Request - State: open - Opened by dakochik about 3 years ago - 2 comments

#465 - Features/#462 gutter icons module case

Pull Request - State: open - Opened by dakochik about 3 years ago - 2 comments

#464 - `module` name resolve

Issue - State: open - Opened by dakochik about 3 years ago

#463 - Gutter icon for overriding rules, include case

Issue - State: open - Opened by dakochik about 3 years ago

#462 - Gutter icon for overriding rules, module case

Issue - State: open - Opened by dakochik about 3 years ago

#461 - Features/#429 override gutter icon for use

Pull Request - State: closed - Opened by dakochik about 3 years ago - 1 comment

#460 - Features/#455 unresolved rule names in use rule section

Pull Request - State: closed - Opened by dakochik about 3 years ago

#459 - Features/#262 checkpoints resolve/completion after rules keyword

Pull Request - State: closed - Opened by dakochik about 3 years ago - 2 comments