Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / JenniNiku/gllvm issues and pull requests

#193 - Logit ordinal, orderedBeta and betaH models.

Pull Request - State: closed - Opened by pekolako 23 days ago

#184 - Covariates for row effects

Issue - State: open - Opened by BertvanderVeen 5 months ago - 2 comments
Labels: enhancement

#180 - Gamma GLLVM: argument "shape" is missing

Issue - State: closed - Opened by AlainZuur 5 months ago - 3 comments

#177 - error with simulate and multiple random effects

Issue - State: closed - Opened by AlainZuur 5 months ago - 4 comments

#172 - model.matrix versus lv.X

Issue - State: closed - Opened by AlainZuur 5 months ago - 8 comments

#171 - randomCoefplot

Issue - State: closed - Opened by AlainZuur 5 months ago - 3 comments

#167 - M6$lv.X

Issue - State: closed - Opened by AlainZuur 5 months ago - 2 comments

#166 - error with predict.region = TRUE

Issue - State: closed - Opened by AlainZuur 5 months ago - 1 comment

#164 - sparse matricies

Issue - State: closed - Opened by AnthonyEbert 5 months ago - 2 comments
Labels: enhancement

#153 - Species/column-species intercepts

Issue - State: closed - Opened by hrlai 6 months ago

#152 - getFourthCorner function does not respect functions in formula

Issue - State: closed - Opened by BertvanderVeen 6 months ago
Labels: bug

#151 - clean-up

Pull Request - State: closed - Opened by BertvanderVeen 7 months ago

#149 - Add website to DESCRIPTION

Pull Request - State: closed - Opened by olivroy 9 months ago

#148 - Add website to DESCRIPTION

Pull Request - State: closed - Opened by olivroy 9 months ago

#145 - Roweffs and coleffs

Pull Request - State: closed - Opened by BertvanderVeen 10 months ago - 1 comment

#138 - Multiple row effects

Pull Request - State: closed - Opened by BertvanderVeen 11 months ago - 1 comment

#131 - Does gllvm deal with correlated covariates internally?

Issue - State: closed - Opened by hrlai 12 months ago

#129 - Any plans for conditional predictions?

Issue - State: open - Opened by smithja16 about 1 year ago - 3 comments
Labels: enhancement, question

#127 - Cleaning up SEs processing

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago

#125 - Validity of gllvm (and copulas) on compositional data

Issue - State: closed - Opened by mike-kratz over 1 year ago - 1 comment

#124 - Bugfix

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago

#123 - Update

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago

#121 - Points' colors meaning in residuals vs linear predictors

Issue - State: closed - Opened by zohrazahir over 1 year ago - 1 comment

#107 - is there a gllvm way to do the equivalent of mvabund::anova.manyglm()?

Issue - State: closed - Opened by dougwyu over 1 year ago - 8 comments

#106 - AIC model selection VS Likelihood Ratio Tests

Issue - State: closed - Opened by RodolfoPelinson over 1 year ago - 1 comment
Labels: question

#105 - Data Preparation for Fourth Corner Analysis

Issue - State: closed - Opened by zohrazahir over 1 year ago - 4 comments

#104 - Minor bugfix

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago - 1 comment

#103 - Interpreting concurrent latent variables

Issue - State: closed - Opened by dougwyu over 1 year ago - 4 comments

#102 - gllvm crashes with tweedie

Issue - State: closed - Opened by BertvanderVeen over 1 year ago - 5 comments
Labels: bug

#101 - ordination with predictors

Issue - State: closed - Opened by julia5cs over 1 year ago - 6 comments

#100 - Gllvm update

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago - 1 comment

#99 - anova comparisons for univariate responses

Issue - State: open - Opened by jebyrnes over 1 year ago - 6 comments
Labels: enhancement

#98 - Bugfix

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago - 1 comment

#97 - Bugfix row-effects concurrent ordination

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago - 1 comment

#96 - concurrent ordination: some predictors in full rank vs. all in latent variables

Issue - State: closed - Opened by dougwyu over 1 year ago - 12 comments

#95 - Correction to Hessian

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago

#94 - estimating common factor scores at the level of a site

Issue - State: open - Opened by dougwyu over 1 year ago - 2 comments
Labels: enhancement

#93 - Random row effect - intercept + coeff ouput

Issue - State: closed - Opened by gooner255 over 1 year ago - 2 comments
Labels: help wanted

#92 - Catch error

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago - 1 comment

#91 - labterm not found error

Issue - State: closed - Opened by dougwyu over 1 year ago - 3 comments
Labels: bug

#90 - anova.gllvm nested models and coefplot species coefficients

Issue - State: closed - Opened by mike-kratz over 1 year ago - 2 comments

#89 - ordination plotting in 1D?

Issue - State: closed - Opened by gooner255 over 1 year ago - 8 comments
Labels: help wanted

#88 - Continuous integration

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago - 1 comment

#87 - Include cloglog as a link function for binomial models

Issue - State: open - Opened by stouffer over 1 year ago - 1 comment
Labels: enhancement

#86 - Error when predicting on new data when row.eff is structured

Issue - State: closed - Opened by hrlai over 1 year ago - 1 comment
Labels: bug

#85 - Update

Pull Request - State: closed - Opened by BertvanderVeen over 1 year ago - 6 comments

#84 - Concurrent ordination in ggplot

Issue - State: closed - Opened by mike-kratz over 1 year ago - 7 comments

#83 - Potential matrix inverse improvements in C++

Issue - State: closed - Opened by BertvanderVeen almost 2 years ago

#82 - Citation update

Pull Request - State: closed - Opened by BertvanderVeen almost 2 years ago - 1 comment

#81 - Minor typos and such

Pull Request - State: closed - Opened by BertvanderVeen almost 2 years ago

#80 - Slight improvement n.init

Pull Request - State: closed - Opened by BertvanderVeen almost 2 years ago

#79 - Update for n.init.

Pull Request - State: closed - Opened by BertvanderVeen almost 2 years ago

#78 - formula argument does not allow for transformation of predictors

Issue - State: closed - Opened by BertvanderVeen almost 2 years ago - 5 comments
Labels: enhancement

#77 - gllvm fails when both TR and control.start are supplied

Issue - State: closed - Opened by hrlai almost 2 years ago - 2 comments
Labels: bug

#76 - Skabbholmen

Pull Request - State: closed - Opened by BertvanderVeen almost 2 years ago

#75 - Bugfixes related to concurrent and constrained ordination

Pull Request - State: closed - Opened by BertvanderVeen almost 2 years ago

#74 - Predict fails when both TR and randomX are supplied

Issue - State: closed - Opened by hrlai almost 2 years ago - 3 comments
Labels: bug

#73 - Warning message when row.eff = "random"

Issue - State: closed - Opened by hrlai almost 2 years ago - 2 comments
Labels: bug

#72 - Error when installing gllvm using go

Issue - State: closed - Opened by aeroned about 2 years ago - 2 comments
Labels: bug

#71 - Error when installing the development version of gllvm from github

Issue - State: open - Opened by cgoetsch about 2 years ago - 9 comments
Labels: bug, question

#70 - typo

Pull Request - State: closed - Opened by JenniNiku about 2 years ago

#69 - Bugfixes

Pull Request - State: closed - Opened by BertvanderVeen about 2 years ago - 1 comment

#68 - Spider data documentation

Pull Request - State: closed - Opened by BertvanderVeen about 2 years ago - 3 comments

#67 - Extended spider data

Pull Request - State: closed - Opened by BertvanderVeen over 2 years ago

#66 - fixing Issue #65 - predict function

Pull Request - State: closed - Opened by dwarton over 2 years ago

#65 - gllvm breaks the predict function!

Issue - State: closed - Opened by dwarton over 2 years ago - 1 comment

#64 - Fixes for residual plots.

Pull Request - State: closed - Opened by BertvanderVeen over 2 years ago

#63 - residual plots change without re-running the model

Issue - State: closed - Opened by PageG over 2 years ago - 2 comments

#62 - General updates, and for ordination with predictors

Pull Request - State: closed - Opened by BertvanderVeen over 2 years ago - 7 comments

#61 - Environmental correlation in gllvm

Issue - State: closed - Opened by Leitemfa almost 3 years ago - 6 comments
Labels: question

#60 - How to identify variables that did not converge?

Issue - State: closed - Opened by Leitemfa almost 3 years ago - 6 comments

#59 - Minor bugfixes

Pull Request - State: closed - Opened by BertvanderVeen almost 3 years ago - 1 comment

#58 - Documrntation of gllvm object

Issue - State: closed - Opened by oharar almost 3 years ago

#57 - Features and fixes

Pull Request - State: closed - Opened by BertvanderVeen almost 3 years ago - 1 comment

#56 - Result interpretation in vignette6

Issue - State: closed - Opened by hilmanamin almost 3 years ago - 5 comments

#55 - Parameter constrains for Gaussian niche modelling

Issue - State: closed - Opened by hrlai about 3 years ago - 8 comments
Labels: question

#54 - Grouped dispersion parameters

Pull Request - State: closed - Opened by BertvanderVeen about 3 years ago - 2 comments

#53 - Fix issue #47

Pull Request - State: closed - Opened by BertvanderVeen about 3 years ago

#52 - Minor bugfixes

Pull Request - State: closed - Opened by BertvanderVeen about 3 years ago

#51 - Minor changes and bugfixes

Pull Request - State: closed - Opened by BertvanderVeen about 3 years ago

#50 - Number of observations reported by logLik and used in IC calculations

Issue - State: closed - Opened by stouffer about 3 years ago - 1 comment
Labels: bug

#49 - Different theta estimates from previous versions

Issue - State: closed - Opened by RodolfoPelinson about 3 years ago - 4 comments
Labels: bug, question

#48 - Predict neglects offset by default?

Issue - State: closed - Opened by stouffer about 3 years ago - 7 comments

#47 - residuals.gllvm() fails when a == b in runif()

Issue - State: closed - Opened by hrlai about 3 years ago - 3 comments
Labels: bug

#46 - Bugfixes

Pull Request - State: closed - Opened by BertvanderVeen about 3 years ago

#45 - Bugfixes, nlm optimizer, and allFit

Pull Request - State: closed - Opened by BertvanderVeen about 3 years ago - 6 comments

#44 - Constrained gllvm minor bugfixes

Pull Request - State: closed - Opened by BertvanderVeen over 3 years ago

#43 - Model-based constrained ordination with random-effects

Pull Request - State: closed - Opened by BertvanderVeen over 3 years ago

#42 - Time series example

Issue - State: open - Opened by jebyrnes over 3 years ago - 11 comments
Labels: enhancement

#41 - Bugfix

Pull Request - State: closed - Opened by BertvanderVeen over 3 years ago

#40 - Quadratic

Pull Request - State: closed - Opened by BertvanderVeen over 3 years ago - 2 comments

#39 - Very small information criterion values (-3.503954e+195)

Issue - State: closed - Opened by KwnLi over 3 years ago - 7 comments

#38 - Ordinal model without latent variables

Issue - State: closed - Opened by BertvanderVeen over 3 years ago - 1 comment

#37 - Bugfixes

Pull Request - State: closed - Opened by BertvanderVeen over 3 years ago

#36 - Bugfix

Pull Request - State: closed - Opened by BertvanderVeen over 3 years ago

#35 - Some minor bugfixes

Pull Request - State: closed - Opened by BertvanderVeen over 3 years ago

#34 - NAs in data

Issue - State: closed - Opened by adhamab over 3 years ago - 10 comments
Labels: enhancement, question