JackCurragh/RiboMetric issues and pull requests

#124 - RiboMetric evaluate

Issue - State: open - Opened by JackCurragh 5 months ago
Labels: enhancement

#123 - Parsing optimisation

Pull Request - State: closed - Opened by JackCurragh about 1 year ago

#122 - Support BAMs with no sequences stored

Issue - State: open - Opened by JackCurragh about 1 year ago

#121 - added bam ox validation to avoid messy errors

Pull Request - State: closed - Opened by JackCurragh about 1 year ago

#120 - added triangle periodicity plot

Pull Request - State: closed - Opened by JackCurragh about 1 year ago

#119 - Bam progress print

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#118 - Annotation file in print table

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#117 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#116 - Annotated read frame distribution

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago - 2 comments

#115 - Prepare split df

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#114 - Variety pack of updates and improvements

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#113 - Relative counts heatmap

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago - 1 comment

#112 - Split bam

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago - 2 comments

#111 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#110 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#109 - Formatting and code cleaning from Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#108 - Main

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#107 - Config from args

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#106 - Update dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#105 - updates to ligation bias and metric test

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#104 - Seperate sequences

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago - 1 comment

#103 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#102 - Logo RiboMetrics rather than RiboMetric

Issue - State: closed - Opened by JackCurragh over 1 year ago

#101 - Example reports out of date

Issue - State: closed - Opened by JackCurragh over 1 year ago - 1 comment

#100 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#99 - Update dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#98 - Seperate sequences (before implemetation)

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#97 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#96 - merge from main - multiprocessed parsing

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#95 - Multiprocess parsing

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#94 - Multiprocess parsing

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#93 - update dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#92 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#91 - Pysam parsing

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#90 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#89 - Categorical ref name

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago - 1 comment

#88 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#87 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#86 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#85 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#84 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#83 - Fixed percentage bug

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#82 - Merge pull request #81 from JackCurragh/dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#81 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#80 - moved example reports to example-reports

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#79 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#78 - Merge from Dev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#77 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#76 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#75 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#74 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#73 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#72 - Merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#71 - Catch dev up with main

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#70 - Included multiple 3nt metrics

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#69 - updated metrics and tests for triplet periodicity

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#68 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#67 - Dev - no longer track reports & rfd metric weighted

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#66 - Updated read frame distribution metric

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#65 - Merge from Main

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#64 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago - 1 comment

#63 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#62 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#61 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#60 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#59 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#58 - Main to dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#57 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#56 - Updating project name from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#55 - Name change

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#54 - Merge pull request #52 from JackCurragh/main - Name Change

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#53 - Merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#52 - Merge pull request #51 from JackCurragh/dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#51 - Dev - made flake8 complient

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#50 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#49 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#48 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago - 1 comment

#47 - Added logoplot to html_report

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#46 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#45 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#44 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#43 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#42 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#41 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#40 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#39 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#38 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#37 - Dev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#36 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#35 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#34 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#33 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#32 - merge from main

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#31 - added plotly==5.14.1 to requirements_dev.txt

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#30 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#29 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

#28 - Dev - made PEP8 compliant

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#27 - Updating dev with changes from main

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#26 - Merge pull request #25 from JackCurragh/lukasdev

Pull Request - State: closed - Opened by JackCurragh over 1 year ago

#25 - Lukasdev

Pull Request - State: closed - Opened by Lukas-Wierdsma over 1 year ago

GitHub / JackCurragh/RiboMetric issues and pull requests