Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / JLSteenwyk/PhyKIT issues and pull requests

#40 - ImportError: cannot import name 'false_discovery_control' from 'scipy.stats'

Issue - State: open - Opened by zhangrengang 23 days ago - 3 comments

#39 - Efficient

Pull Request - State: closed - Opened by JLSteenwyk 2 months ago

#38 - Phykit `thread_dna` with the log of Clipkit gives alignments of different lengths

Issue - State: closed - Opened by MarionPerrier 4 months ago - 7 comments

#37 - Bump certifi from 2024.6.2 to 2024.7.4 in /docs

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#36 - Bump urllib3 from 2.2.1 to 2.2.2 in /docs

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#35 - Saturation value exceeded the expected range

Issue - State: closed - Opened by Dreamening 5 months ago - 1 comment

#34 - enhancement: bipartition support stats

Issue - State: closed - Opened by JLSteenwyk 5 months ago - 1 comment

#33 - enhancement: faidx

Issue - State: closed - Opened by JLSteenwyk 5 months ago - 1 comment

#32 - Update python version

Pull Request - State: closed - Opened by JLSteenwyk 6 months ago

#31 - Bump requests from 2.31.0 to 2.32.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#30 - Bump jinja2 from 3.1.3 to 3.1.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#29 - Dna thread

Pull Request - State: closed - Opened by JLSteenwyk 9 months ago

#28 - ValueError: x and y must have length at least 2.

Issue - State: closed - Opened by chun-he-316 9 months ago - 12 comments

#27 - Recode

Pull Request - State: closed - Opened by JLSteenwyk 9 months ago

#26 - Recode

Pull Request - State: closed - Opened by JLSteenwyk 9 months ago

#25 - Enhancement: Dna thread

Pull Request - State: closed - Opened by JLSteenwyk 9 months ago

#24 - added rcvt and removed deprecated functions in thread_dna

Pull Request - State: closed - Opened by JLSteenwyk 10 months ago

#23 - Update python version

Pull Request - State: closed - Opened by JLSteenwyk 12 months ago

#22 - simplified the reporting of results for the hidden paralogy check fun…

Pull Request - State: closed - Opened by JLSteenwyk 12 months ago

#21 - added additional line breaks for clarity in hidden paralogy check docs

Pull Request - State: closed - Opened by JLSteenwyk 12 months ago

#20 - Update python version

Pull Request - State: closed - Opened by JLSteenwyk 12 months ago

#19 - fixed docs error that removed everything after the dvmc function

Pull Request - State: closed - Opened by JLSteenwyk 12 months ago

#18 - removed the use of the root.txt file from the DVMC function

Pull Request - State: closed - Opened by JLSteenwyk 12 months ago

#17 - Update python version

Pull Request - State: closed - Opened by JLSteenwyk about 1 year ago

#16 - Update python version

Pull Request - State: closed - Opened by JLSteenwyk about 1 year ago

#15 - Saturation calculation error?

Issue - State: closed - Opened by ymilesz about 1 year ago - 3 comments

#14 - Bump certifi from 2020.12.5 to 2023.7.22 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#13 - Bump scipy from 1.4.1 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#12 - Bump requests from 2.25.1 to 2.31.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#11 - Can gene-gene covariation relationships be calculated for orthologous gene families？

Issue - State: closed - Opened by hanxiaoxu1110 over 1 year ago - 1 comment

#10 - Bump certifi from 2020.12.5 to 2022.12.7 in /docs

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#9 - typo - copy the blm function name properly

Pull Request - State: closed - Opened by hyphaltip over 2 years ago

#8 - concatenate issue

Issue - State: closed - Opened by hverbruggen over 2 years ago - 1 comment

#7 - Bump babel from 2.9.0 to 2.9.1 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#6 - create_concat: AttributeError: 'str' object has no attribute 'decode'

Issue - State: closed - Opened by TobyBaril about 3 years ago - 4 comments

#5 - Bump urllib3 from 1.26.4 to 1.26.5 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#4 - Bump pygments from 2.6.1 to 2.7.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#3 - Bump pyyaml from 5.3.1 to 5.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#2 - Bump jinja2 from 2.11.2 to 2.11.3 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#1 - Create base tree class and port internode_labeler

Pull Request - State: closed - Opened by TJBIII over 4 years ago