Ecosyste.ms: Issues

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GitHub / JCVenterInstitute/NSForest issues and pull requests

#23 - Manage scanpy plots

Pull Request - State: open - Opened by ralatsdc about 1 month ago

#21 - Add preprocessing option

Pull Request - State: closed - Opened by ralatsdc 4 months ago - 1 comment

#20 - ipynb/Tutorial.ipynb

Pull Request - State: closed - Opened by adeslatt 8 months ago

#19 - Question about the ns.pl.dotplot dendrogram variable

Issue - State: open - Opened by Charithwij 8 months ago - 1 comment

#18 - Github Tutorial Outdated

Issue - State: open - Opened by Charithwij 8 months ago - 1 comment

#17 - Conda Env YML Outdated and Suggestion for Version Control Addition

Issue - State: open - Opened by Charithwij 8 months ago - 1 comment

#16 - .yml env installation failure due to pip problems

Issue - State: open - Opened by KarlKaise 10 months ago - 1 comment

#15 - merging dev bp24 with main

Pull Request - State: closed - Opened by BeverlyPeng 10 months ago

#14 - Update the tutorial from `NSForest_v3dot9_1` to `nsforest` for the import

Issue - State: closed - Opened by jolespin almost 2 years ago - 1 comment

#13 - Adding pip instructions and packaging files

Pull Request - State: closed - Opened by ttl074 almost 2 years ago

#12 - python error

Issue - State: closed - Opened by lwhitmore over 2 years ago - 1 comment

#11 - Shape of passed values is (3474, 1), indices imply (3474, 33514)

Issue - State: closed - Opened by ronghui1992 almost 3 years ago - 1 comment

#10 - Error while running NSForest on a Scanpy object

Issue - State: closed - Opened by siavashmoghadami almost 3 years ago - 2 comments

#9 - Nodes are not implemented error when running NSForest

Issue - State: closed - Opened by jhkliu42 almost 3 years ago - 1 comment

#8 - Use features identified by NS Forest in Seurat

Issue - State: closed - Opened by SHADJIA almost 3 years ago - 1 comment

#7 - Several issues when using scanpy object converted from seurat

Issue - State: closed - Opened by ChristinaSteyn about 3 years ago - 3 comments

#6 - Index error after removal of median expressed genes

Issue - State: closed - Opened by chenthorn about 3 years ago - 1 comment

#5 - KeyError: '0' on the ranking step

Issue - State: closed - Opened by YuliaInn over 3 years ago - 2 comments

#4 - KeyError 0 when running on AnnData object created from Seurat

Issue - State: closed - Opened by achamess over 3 years ago - 4 comments

#3 - Potential significant optimization with combinations instead of permutations

Issue - State: closed - Opened by cdarby over 4 years ago - 1 comment

#2 - Solve issue #1 (TypeError: 'NoneType' object is not callable)

Pull Request - State: closed - Opened by e-sollier over 5 years ago

#1 - TypeError: 'NoneType' object is not callable

Issue - State: closed - Opened by giuseppedelnapalle about 6 years ago - 2 comments