Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Intel-HLS/GenomicsDB issues and pull requests

#228 - Trouble installing in Ubuntu

Issue - State: open - Opened by anthonypalacios over 5 years ago - 1 comment

#227 - CSV Data Import in GenomicsDB

Issue - State: open - Opened by drsamibioinfo over 5 years ago

#226 - Trouble Installing

Issue - State: closed - Opened by RoydenClark almost 6 years ago - 5 comments

#225 - Error while writing to TileDB array

Issue - State: closed - Opened by phuchoang1012 about 6 years ago - 2 comments

#224 - Bump up version to 0.10.2

Pull Request - State: closed - Opened by kgururaj about 6 years ago

#223 - Add .gitattributes for README

Pull Request - State: closed - Opened by nalinigans about 6 years ago - 1 comment

#222 - BookKeeping error while using GATK4 GenomicsDBImport

Issue - State: open - Opened by TimurIs about 6 years ago - 4 comments

#221 - Move to new dependencies version to fix Hadoop cloud configuration

Pull Request - State: closed - Opened by nalinigans about 6 years ago

#220 - Travis lcov

Pull Request - State: closed - Opened by nalinigans about 6 years ago - 1 comment

#219 - Travis lcov

Pull Request - State: closed - Opened by nalinigans about 6 years ago

#218 - Small fix to Spark golden output

Pull Request - State: closed - Opened by mlathara about 6 years ago

#217 - More fixes

Pull Request - State: closed - Opened by kgururaj about 6 years ago

#215 - Fix for issue #136.

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#214 - Use fixes in TileDB for closing file handles when not needed

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#213 - Query based on other column

Issue - State: open - Opened by aardes over 6 years ago - 2 comments

#212 - Code hardening for SDL

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#211 - Core Dumped

Issue - State: open - Opened by rtemanni over 6 years ago - 2 comments

#210 - Java fixes for URL handling of input VCFs

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#209 - Minor fix

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#208 - Bug fix

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#207 - tmp vcf header getting unlinked very early for Cloud URLs

Issue - State: closed - Opened by nalinigans over 6 years ago - 3 comments

#206 - Provide flag to disable file locking in TileDB

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#205 - Cmake

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#204 - Fix stack overflow error

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#203 - Allow USE_HDFS option to be passed to dependency

Pull Request - State: closed - Opened by nalinigans over 6 years ago

#202 - Configuration classes restructuring

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#201 - [Question] MPI query

Issue - State: closed - Opened by sherzinger over 6 years ago - 4 comments

#200 - Bug fix for issue 197

Pull Request - State: closed - Opened by mlathara over 6 years ago

#198 - Bug fixes

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#197 - Problematic frame tiledb_array_iterator_reset_subarray from JNI

Issue - State: closed - Opened by jacmarjorie over 6 years ago - 6 comments

#195 - Can not recognize the vcf/gvcf

Issue - State: closed - Opened by aardes over 6 years ago - 3 comments

#194 - Callback function after batch completion in import

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#193 - GATK URI support

Pull Request - State: closed - Opened by OmicsDataAutomation over 6 years ago - 5 comments

#192 - Minor fixes

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#191 - Update year version

Pull Request - State: closed - Opened by raonyguimaraes over 6 years ago

#190 - Profiling and skip cells

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#189 - lb_row_idx and spanning deletion fix

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#188 - Throw up TileDB error messages in exceptions

Pull Request - State: closed - Opened by kgururaj over 6 years ago - 1 comment

#187 - Cmake error: cannot find MPI on macOS

Issue - State: closed - Opened by nuin over 6 years ago - 9 comments

#186 - Querying across multiple arrays

Issue - State: closed - Opened by simonwhite71 over 6 years ago

#185 - Minor fix in importer

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#184 - AEJ-276: Modifications to the code in order to integrate with GATK

Pull Request - State: closed - Opened by francares over 6 years ago
Labels: in review

#183 - Optimization for sites only query

Pull Request - State: closed - Opened by kgururaj over 6 years ago
Labels: in review

#182 - Sites only fix

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#181 - GenomicsDBImporter API simplification

Pull Request - State: closed - Opened by kgururaj over 6 years ago - 8 comments
Labels: do not merge, in review

#180 - Minor Improvements to GenomicsDBImporter package

Pull Request - State: closed - Opened by francares over 6 years ago - 2 comments

#179 - Minor improvements to GenomicsDBFeatureReader

Pull Request - State: closed - Opened by francares over 6 years ago

#178 - Bug fix

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#177 - AEJ-271: GenomicsDBImport refactoring #5 - JNI Class

Pull Request - State: closed - Opened by francares over 6 years ago

#176 - AEJ-271: GenomicsDBImport refactoring #4 - Packages

Pull Request - State: closed - Opened by francares over 6 years ago

#175 - AEJ-271: GenomicsDBImport refactoring #3 - Extensions

Pull Request - State: closed - Opened by francares over 6 years ago - 1 comment

#174 - AEJ-271: GenomicsDBImport refactoring #2 - BaseImportConfig

Pull Request - State: closed - Opened by francares over 6 years ago

#173 - First iteration on GenomicsDBImporter refactoring

Pull Request - State: closed - Opened by francares over 6 years ago

#172 - Pass through query JSON (backward compatibility)

Pull Request - State: closed - Opened by kgururaj over 6 years ago - 2 comments

#170 - AEJ-275: Move protobuf output structures to com.intel.genomicsdb.model

Pull Request - State: closed - Opened by francares over 6 years ago

#169 - Optimization for site-only query

Pull Request - State: closed - Opened by kgururaj over 6 years ago

#168 - GenomicsDBImporter Protobuf API

Pull Request - State: closed - Opened by psfoley over 6 years ago - 1 comment
Labels: do not merge, in review, needs rebase

#167 - build difficulties, docker error

Issue - State: open - Opened by jpdna over 6 years ago - 1 comment

#167 - build difficulties, docker error

Issue - State: open - Opened by jpdna over 6 years ago - 1 comment

#166 - Sites only query

Pull Request - State: closed - Opened by kgururaj over 6 years ago - 1 comment

#166 - Sites only query

Pull Request - State: closed - Opened by kgururaj over 6 years ago - 1 comment

#165 - AEJ-205: Implemented first iteration on chromosome intervals parallel…

Pull Request - State: closed - Opened by francares almost 7 years ago - 5 comments

#164 - AEJ-204: Improved way of working with Java artifacts.

Pull Request - State: closed - Opened by francares almost 7 years ago - 1 comment

#163 - AEJ-203: Adding support for compiling with MacOS Sierra and High Sierra.

Pull Request - State: closed - Opened by francares almost 7 years ago

#163 - AEJ-203: Adding support for compiling with MacOS Sierra and High Sierra.

Pull Request - State: closed - Opened by francares almost 7 years ago

#162 - GenomicsDB changes for HDFS

Pull Request - State: closed - Opened by OmicsDataAutomation almost 7 years ago - 2 comments
Labels: in review, needs rebase

#161 - Called GTs are poorly formatted and sometimes inaccurate

Issue - State: closed - Opened by ldgauthier almost 7 years ago - 7 comments

#160 - Performance regression fix in columnar iterator after code restructuring

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#160 - Performance regression fix in columnar iterator after code restructuring

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#159 - Bug fix - resize LUTs when dealing with spanning deletions

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#159 - Bug fix - resize LUTs when dealing with spanning deletions

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#158 - propagate underlying exception in GenomicsDBImporter.java on failure to load

Pull Request - State: closed - Opened by lbergelson almost 7 years ago - 1 comment

#158 - propagate underlying exception in GenomicsDBImporter.java on failure to load

Pull Request - State: closed - Opened by lbergelson almost 7 years ago - 1 comment

#157 - BCF2 workaround

Pull Request - State: closed - Opened by kgururaj almost 7 years ago - 1 comment

#156 - Bug fix in TileDB array delete

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#156 - Bug fix in TileDB array delete

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#155 - Fixes for cross-compilation

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#155 - Fixes for cross-compilation

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#154 - Minor fixes in TileDB to handle PRIu64 in C++ for some compiler versions

Pull Request - State: closed - Opened by kgururaj almost 7 years ago - 1 comment

#154 - Minor fixes in TileDB to handle PRIu64 in C++ for some compiler versions

Pull Request - State: closed - Opened by kgururaj almost 7 years ago - 1 comment

#153 - Allele specific annotation support

Pull Request - State: closed - Opened by kgururaj almost 7 years ago

#152 - Upgrade version to 0.8.0

Pull Request - State: closed - Opened by psfoley almost 7 years ago

#151 - GATK 4: Full VCF Header Support

Pull Request - State: closed - Opened by psfoley almost 7 years ago

#150 - Bug fix

Pull Request - State: closed - Opened by kgururaj about 7 years ago

#150 - Bug fix

Pull Request - State: closed - Opened by kgururaj about 7 years ago

#149 - Update to TileDB master

Pull Request - State: closed - Opened by kgururaj about 7 years ago - 1 comment

#149 - Update to TileDB master

Pull Request - State: closed - Opened by kgururaj about 7 years ago - 1 comment

#148 - No Sample Line

Issue - State: closed - Opened by aardes about 7 years ago - 8 comments

#147 - DON'T MERGE: Update tiledb latest

Pull Request - State: closed - Opened by kdatta about 7 years ago - 1 comment

#147 - DON'T MERGE: Update tiledb latest

Pull Request - State: closed - Opened by kdatta about 7 years ago - 1 comment

#146 - DB-229

Pull Request - State: closed - Opened by psfoley about 7 years ago

#146 - DB-229

Pull Request - State: closed - Opened by psfoley about 7 years ago

#145 - changes for spark locality

Pull Request - State: closed - Opened by mlathara about 7 years ago

#144 - Upgrade version to 0.7.0

Pull Request - State: closed - Opened by kgururaj about 7 years ago

#144 - Upgrade version to 0.7.0

Pull Request - State: closed - Opened by kgururaj about 7 years ago

#143 - Produce FILTER in combined VCF records -

Pull Request - State: closed - Opened by kgururaj about 7 years ago