InfectionMedicineProteomics/BINN issues and pull requests

#45 - Question about drawing the Sankey plot

Issue - State: open - Opened by oahux28 2 months ago

#44 - Fix bug

Pull Request - State: open - Opened by ErikHartman 7 months ago

#43 - Ndpia

Pull Request - State: closed - Opened by ErikHartman 7 months ago

#42 - max() arg is an empty sequence

Issue - State: open - Opened by ShivaAryal 8 months ago - 2 comments

#41 - Issue regarding creation of network

Issue - State: closed - Opened by rayadheeraj 9 months ago - 1 comment

#40 - Add random seed

Pull Request - State: closed - Opened by ErikHartman 10 months ago

#39 - Seeking Assistance with Reproducing Results in 'Interpreting biologically informed neural networks' Paper

Issue - State: closed - Opened by 123nineh 10 months ago - 1 comment

#38 - suggestions for user friendly

Issue - State: closed - Opened by neurozhangs 11 months ago

#37 - Test pr

Pull Request - State: closed - Opened by ErikHartman 11 months ago

#36 - Commit to test github actions

Pull Request - State: closed - Opened by ErikHartman about 1 year ago - 1 comment

#35 - Average explainer

Pull Request - State: closed - Opened by ErikHartman about 1 year ago

#34 - Several minor fixes

Pull Request - State: closed - Opened by ErikHartman about 1 year ago

#33 - :bug: tensorboard dependency missing, API update

Pull Request - State: closed - Opened by enryH about 1 year ago - 6 comments

#32 - Changed imports to lightning and updated the overall import versions

Pull Request - State: closed - Opened by ErikHartman about 1 year ago - 1 comment

#31 - Update the API to the new Lightning-package from PyTorch and make sure everything runs smoothly.

Issue - State: closed - Opened by ErikHartman about 1 year ago

#30 - Fan working now

Pull Request - State: closed - Opened by ErikHartman about 1 year ago

#29 - Fixed bug in importance_network and plot for subgraphs

Pull Request - State: closed - Opened by ErikHartman about 1 year ago

#28 - Docs

Pull Request - State: closed - Opened by ErikHartman about 1 year ago

#27 - Input clarification

Issue - State: closed - Opened by danielgeiszler about 1 year ago - 2 comments

#26 - Add zenodo badge to README

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#25 - update docs and notebooks

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#24 - Parent and child --> source and target

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#23 - Change "parent" and "child" to either from/to or source/target

Issue - State: closed - Opened by ErikHartman over 1 year ago

#22 - Merge non-multiclass connections if mutliclass == False

Issue - State: closed - Opened by ErikHartman over 1 year ago
Labels: enhancement

#21 - Merge connections going into "Other connections X"

Issue - State: closed - Opened by ErikHartman over 1 year ago

#20 - Minor changes to plotting

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#19 - Linting and requirements

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#18 - Create python-app.yml

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#17 - Add testing data that makes sure that explainer works by having mock data that simulates one important protein and pathway

Issue - State: open - Opened by ErikHartman over 1 year ago

#16 - Added tests

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#15 - Removed the underscore split from the importance network and plotting

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#14 - Refactor RecursivePathwayElimination API

Issue - State: open - Opened by arnscott over 1 year ago - 1 comment
Labels: enhancement

#13 - Bug with pandas 2.0.3

Issue - State: closed - Opened by ErikHartman over 1 year ago - 1 comment
Labels: bug

#12 - Add pypi badge to README

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#11 - Normalization as default

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#10 - Sankey plots do not work with new explain_average function

Issue - State: closed - Opened by arnscott over 1 year ago - 2 comments
Labels: bug

#9 - Recursive pathway elimination

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#8 - Refactor network

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#7 - Generalize to multiple classes

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#6 - Packaging setup

Pull Request - State: closed - Opened by arnscott over 1 year ago

#5 - Docs

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#4 - Generalization update

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#3 - Added explain_average to BINNExplainer

Pull Request - State: closed - Opened by ErikHartman over 1 year ago

#2 - Network package refactor

Pull Request - State: closed - Opened by ErikHartman almost 2 years ago

#1 - Create LICENSE

Pull Request - State: closed - Opened by ErikHartman about 2 years ago

GitHub / InfectionMedicineProteomics/BINN issues and pull requests