Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ImperialCollegeLondon/epidemia issues and pull requests

#66 - Future RStan Compatibility

Pull Request - State: closed - Opened by andrjohns over 2 years ago

#65 - Installing error in Windows 10

Issue - State: open - Opened by xmusphlkg almost 3 years ago - 1 comment

#63 - typo

Pull Request - State: open - Opened by CGMossa about 3 years ago

#62 - inference for multiple strains

Issue - State: closed - Opened by andreaskoher about 3 years ago - 1 comment

#61 - Problems installing in ubuntu 20.04

Issue - State: open - Opened by joscani over 3 years ago - 1 comment

#60 - Vignette typo

Pull Request - State: open - Opened by seabbs over 3 years ago

#59 - failed to install from GitHub

Issue - State: closed - Opened by nadyawilliams over 3 years ago - 4 comments

#58 - Installation in Debian

Issue - State: closed - Opened by papapanagiotoug over 3 years ago - 1 comment

#57 - Broken link to forecast evaluation vignette

Issue - State: closed - Opened by jonathanishhorowicz almost 4 years ago

#56 - alternative model for overdispersion

Issue - State: closed - Opened by Schmidtpk almost 4 years ago - 3 comments

#55 - Confusing error if random walk prior scale is a variable

Issue - State: closed - Opened by ChrisHIV almost 4 years ago - 2 comments
Labels: bug

#54 - R should not be inferred during seeding period

Issue - State: open - Opened by ChrisHIV almost 4 years ago - 3 comments
Labels: enhancement

#53 - plot alpha over time

Issue - State: closed - Opened by ChrisHIV almost 4 years ago - 2 comments

#52 - Empty plots in the TimeDependentR vignette

Issue - State: closed - Opened by ChrisHIV almost 4 years ago

#51 - Allowing log-normal observations

Pull Request - State: closed - Opened by leonjwu almost 4 years ago

#50 - EuropeCovid example not converging & doc missing

Issue - State: closed - Opened by annecori almost 4 years ago - 1 comment

#49 - Allowing normal observations

Pull Request - State: closed - Opened by leonjwu about 4 years ago

#48 - plot_rt() gives an empty plot

Issue - State: closed - Opened by wwiecek about 4 years ago - 1 comment

#47 - plot_rt() example doesn't work

Issue - State: closed - Opened by wwiecek about 4 years ago - 1 comment

#46 - require populations to be numeric

Issue - State: closed - Opened by jscott6 about 4 years ago - 1 comment

#45 - Fixes #44

Pull Request - State: closed - Opened by gkarthik about 4 years ago - 1 comment

#44 - plot_* functions result in empty plots because tag is set as NA

Issue - State: closed - Opened by gkarthik about 4 years ago - 1 comment

#43 - install_github doesn't include documentation

Issue - State: closed - Opened by wwiecek about 4 years ago - 1 comment

#42 - error occurred during calling the sampler; sampling not done

Issue - State: closed - Opened by Spatial-R about 4 years ago - 4 comments

#41 - allow specification of parameters to epim... init_run

Issue - State: closed - Opened by agandy about 4 years ago - 1 comment
Labels: enhancement

#40 - Interface with R package COVID19

Issue - State: closed - Opened by flaxter about 4 years ago - 1 comment

#39 - Partial pooling for infection ascertainment rate(IAR) in the model

Issue - State: closed - Opened by s-mishra about 4 years ago - 1 comment
Labels: enhancement

#38 - Retrospective Evaluation

Issue - State: closed - Opened by s-mishra about 4 years ago - 1 comment
Labels: enhancement

#37 - plot_obs date range does not accept Date object and NA

Issue - State: closed - Opened by agandy about 4 years ago - 4 comments
Labels: bug

#36 - Flexible observation mechanism

Issue - State: closed - Opened by agandy about 4 years ago
Labels: enhancement

#35 - Starting values for sampling

Issue - State: closed - Opened by jscott6 about 4 years ago - 2 comments
Labels: enhancement

#34 - plot_obs - feature requests

Issue - State: closed - Opened by agandy over 4 years ago - 10 comments
Labels: enhancement

#33 - instructions for installing

Issue - State: closed - Opened by flaxter over 4 years ago - 3 comments

#32 - Clarify incidence -- of what?

Issue - State: closed - Opened by flaxter over 4 years ago - 2 comments

#31 - Add cumulative flag in plot_rt and plot_obs methods

Issue - State: closed - Opened by jscott6 over 4 years ago

#30 - interpretation of prior_intercept

Issue - State: closed - Opened by jscott6 over 4 years ago - 2 comments

#29 - Include NPIs in R(t) plots as in published paper and reports

Issue - State: closed - Opened by flaxter over 4 years ago - 5 comments
Labels: enhancement

#28 - Facilitate use of "single country analaysis"

Issue - State: closed - Opened by agandy over 4 years ago - 1 comment

#27 - Allow selection of the distribution of the observations

Issue - State: closed - Opened by agandy over 4 years ago - 3 comments
Labels: enhancement

#26 - Wrappers around epim

Issue - State: open - Opened by jscott6 over 4 years ago - 2 comments
Labels: enhancement

#25 - Reporting Rt as a moving average over x days

Issue - State: closed - Opened by s-mishra over 4 years ago - 8 comments

#24 - Serial Interval Estimation

Issue - State: open - Opened by s-mishra over 4 years ago
Labels: enhancement

#23 - Counterfactuals?

Issue - State: closed - Opened by flaxter over 4 years ago - 3 comments
Labels: enhancement

#22 - Vignette needs an only cases observation example

Issue - State: closed - Opened by s-mishra over 4 years ago - 6 comments
Labels: documentation

#21 - Partial pool at different levels

Issue - State: closed - Opened by s-mishra over 4 years ago - 2 comments
Labels: enhancement

#20 - Add number infectious plot

Issue - State: closed - Opened by agandy over 4 years ago - 2 comments
Labels: enhancement

#19 - Vignette Should have a partial pool example

Issue - State: closed - Opened by s-mishra over 4 years ago - 1 comment
Labels: documentation

#18 - Switch to Roxygen generated namespace

Issue - State: closed - Opened by agandy over 4 years ago
Labels: enhancement

#17 - Allow log scales in Rt plots

Issue - State: closed - Opened by agandy over 4 years ago - 1 comment
Labels: enhancement

#16 - tests produce warning messages

Issue - State: closed - Opened by agandy over 4 years ago - 1 comment
Labels: bug

#15 - Importations

Issue - State: open - Opened by s-mishra over 4 years ago - 1 comment
Labels: enhancement

#14 - Allow mu to be pooled

Issue - State: closed - Opened by s-mishra over 4 years ago - 2 comments
Labels: enhancement

#13 - Allow specification of prior on Rt

Issue - State: closed - Opened by agandy over 4 years ago - 2 comments

#12 - Add European Covid data as a data example

Issue - State: closed - Opened by jscott6 over 4 years ago

#11 - Add prior for effect of interventions use in Nature paper to epim

Issue - State: closed - Opened by agandy over 4 years ago - 1 comment

#10 - Use Rdpack for citations of references within our documentation

Issue - State: closed - Opened by agandy over 4 years ago

#8 - Different factor levels leads to wrong data passed to stan

Issue - State: closed - Opened by jscott6 over 4 years ago - 1 comment

#7 - Add random walk as noise term on Rt

Issue - State: closed - Opened by agandy over 4 years ago - 1 comment

#6 - Create vignette covering basic usage

Issue - State: closed - Opened by jscott6 over 4 years ago

#5 - Implement plot, summary, print methods for 'epimodel' class

Issue - State: closed - Opened by jscott6 over 4 years ago - 7 comments

#4 - Forecasting

Issue - State: closed - Opened by jscott6 over 4 years ago - 1 comment
Labels: duplicate

#3 - Allow generation interval to be specified via CDF

Issue - State: open - Opened by agandy over 4 years ago
Labels: enhancement

#2 - Add example with two different types of observations

Issue - State: closed - Opened by agandy over 4 years ago

#1 - Specific error message checks in input unit tests

Issue - State: closed - Opened by jonathanishhorowicz over 4 years ago - 3 comments