Ecosyste.ms: Issues

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GitHub / Illumina/interop issues and pull requests

#350 - Unable to install interop Python module in Docker container.

Issue - State: closed - Opened by lutrarutra about 2 months ago - 2 comments

#349 - Issue-348: Interop is not compatible with Numpy 2.0.0

Pull Request - State: closed - Opened by ezralanglois 5 months ago

#348 - Interop is not compatible with Numpy 2.0.0

Issue - State: closed - Opened by Aratz 5 months ago
Labels: bug

#345 - [question]: Understanding interop_index-summary usage and different csv outputs

Issue - State: closed - Opened by tamuanand 6 months ago - 1 comment
Labels: question

#344 - C# Percentage > Q30 by cycle graph

Issue - State: closed - Opened by IIID-Don 7 months ago - 6 comments

#343 - Metrics Run summary Q30 per read in C#

Issue - State: closed - Opened by IIID-Don 7 months ago - 1 comment

#342 - Can I get all the index information

Issue - State: closed - Opened by Nitin123-4 8 months ago - 3 comments

#340 - Please update documentation for python bindings

Issue - State: closed - Opened by chaetognatha 10 months ago
Labels: docs

#339 - interop-summary: description of columns

Issue - State: closed - Opened by nick-youngblut 11 months ago - 2 comments
Labels: question

#338 - imaging_table lacks CLI help docs

Issue - State: closed - Opened by nick-youngblut 11 months ago
Labels: enhancement

#337 - InterOp-summary not returning a properly formatted csv

Issue - State: closed - Opened by nick-youngblut 11 months ago - 3 comments
Labels: wontfix

#336 - How to calculate cluster density (K/mm2) from the interop module

Issue - State: closed - Opened by kpatankar 11 months ago - 4 comments

#335 - Issue-333: Fix missing Python 3.9 wheel for manylinux

Pull Request - State: closed - Opened by ezralanglois 12 months ago
Labels: bug

#333 - What files/directories are actually needed as input?

Issue - State: closed - Opened by nick-youngblut 12 months ago - 6 comments
Labels: bug

#332 - python tutorials are still Python2

Issue - State: closed - Opened by nick-youngblut 12 months ago - 4 comments

#331 - Issue-330: Add Python 3.11 Support

Pull Request - State: closed - Opened by ezralanglois about 1 year ago

#330 - Support for python 3.11

Issue - State: closed - Opened by CodingKaiser about 1 year ago - 1 comment
Labels: enhancement

#329 - AlignmentMetricsOut.bin and IndexMetricsOut.bin mapping information

Issue - State: closed - Opened by NateBaileyTempus about 1 year ago - 4 comments

#328 - pip install is version 1.1.23?

Issue - State: closed - Opened by dmcmanam about 1 year ago - 8 comments

#327 - Python wheel for interop?

Issue - State: closed - Opened by yeemey about 1 year ago - 1 comment

#326 - index-summary app only returns header line

Issue - State: closed - Opened by rdavison about 1 year ago - 3 comments

#325 - Index with # of reads information

Issue - State: closed - Opened by Nitin123-4 over 1 year ago - 10 comments

#324 - plot_by_lane: density plot

Issue - State: closed - Opened by kohleman over 1 year ago - 2 comments

#323 - Issue-322: Fix segfault with dumptext when writing out adapter

Pull Request - State: closed - Opened by ezralanglois over 1 year ago

#321 - Support for NovaSeqX/NovaSeqXPlus

Issue - State: closed - Opened by tkwitsil over 1 year ago - 1 comment

#320 - Bindings for Java

Issue - State: closed - Opened by rich7409 over 1 year ago - 4 comments

#318 - Access to channel names

Issue - State: closed - Opened by sybrohee over 1 year ago - 3 comments

#317 - Update Tutorial_01_Intro.ipynb

Pull Request - State: closed - Opened by poglesbyg over 1 year ago - 1 comment

#312 - `summary` returns "0" exit code on invalid run

Issue - State: closed - Opened by tetedange13 almost 2 years ago

#311 - Typo

Pull Request - State: closed - Opened by nuin almost 2 years ago

#310 - Unit of cluster_count_pf?

Issue - State: closed - Opened by yfu-recursion almost 2 years ago - 4 comments

#309 - Python question: Reading RunParameters.xml

Issue - State: closed - Opened by kohleman almost 2 years ago - 2 comments

#308 - Fix bug in core.py with newer versions of NumPy

Pull Request - State: closed - Opened by ezralanglois almost 2 years ago

#306 - interop_summary command issue

Issue - State: closed - Opened by mcnairr2 almost 2 years ago - 3 comments

#305 - Way to get all indexes from python

Issue - State: closed - Opened by hotsoupisgood almost 2 years ago - 5 comments

#304 - Error in tutorial_03

Issue - State: closed - Opened by hotsoupisgood almost 2 years ago - 4 comments
Labels: bug

#303 - Legacy Phasing/Prephasing Rate

Issue - State: closed - Opened by PKazakova about 2 years ago - 1 comment

#302 - Add missing summary metrics

Pull Request - State: closed - Opened by ezralanglois about 2 years ago

#301 - Ensure Python wheels support ARM M1 with universal2

Pull Request - State: closed - Opened by ezralanglois about 2 years ago
Labels: bug

#300 - pf std from interop

Issue - State: closed - Opened by katiemharding about 2 years ago - 7 comments

#299 - Fix issue where wheels cannot be updated

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#298 - Fix windows wheel deployment

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#297 - Issue-282: Support universal build for M1 mac

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#296 - Add support for error metrics v6

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#295 - no result was returned

Issue - State: closed - Opened by daisyflemming over 2 years ago - 5 comments

#294 - Fix InterOp Python Wheels do not run on Mac OS X High Sierra 10.13

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#293 - Recent InterOp Python Wheels do not run on Mac OS X High Sierra 10.13

Issue - State: closed - Opened by lukato01 over 2 years ago - 12 comments
Labels: bug

#292 - Fix token for apps and dotnet releases

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#291 - Add test for .NET standard artifacts

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#289 - Deploy C++ applications on public repo using Github Actions

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#288 - IPA-10585: Add github action support for deploying docs

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#287 - Fix long description and test

Pull Request - State: closed - Opened by ezralanglois over 2 years ago - 1 comment

#286 - Python: Per Lane Metrics

Issue - State: closed - Opened by lukato01 over 2 years ago - 5 comments

#285 - Documentation...?

Issue - State: closed - Opened by oakeley over 2 years ago - 1 comment

#284 - Swath number exceeds number of swaths in RunInfo.xml

Issue - State: closed - Opened by koen-swaerts over 2 years ago - 5 comments

#283 - interop.py_interop_metrics.index_out_of_bounds_exception

Issue - State: closed - Opened by lgwatgithub over 2 years ago - 6 comments

#282 - How to install python interop package on M1 mac?

Issue - State: closed - Opened by jwarwick-delfi over 2 years ago - 1 comment

#281 - Add support for Python 3.10 for Linux, Windows and Mac OSX

Pull Request - State: closed - Opened by ezralanglois over 2 years ago

#280 - InterOp python library incorrectly reporting NovaSeq flowcell surfaces count

Issue - State: closed - Opened by ppswang almost 3 years ago - 1 comment

#279 - summary from interop

Issue - State: closed - Opened by coykMccoyk almost 3 years ago - 2 comments

#278 - calling `interop_summary` and `interop_index-summary` when using bcl-convert

Issue - State: closed - Opened by BCArg about 3 years ago - 3 comments

#277 - Regarding of interop_index-summary result

Issue - State: closed - Opened by hmkim about 3 years ago - 15 comments
Labels: bug

#275 - Can this be run on the Nextseq 2000 directly?

Issue - State: closed - Opened by SharifShaaban-PHS over 3 years ago - 3 comments

#274 - license for csharp cmake files

Issue - State: closed - Opened by kurtsansom over 3 years ago - 1 comment

#273 - Install issue

Issue - State: closed - Opened by bnouyou over 3 years ago - 2 comments
Labels: bug

#272 - Improve compatibility/usability of using interop as a bundled shared library

Issue - State: open - Opened by torbjoernk over 3 years ago - 1 comment
Labels: enhancement

#271 - Python: `index_summary` : Cluster Count == # of seq * 2 of a PE run?

Issue - State: open - Opened by sklages over 3 years ago - 3 comments
Labels: bug

#270 - Adjust size of bins in q-score Histogram

Issue - State: closed - Opened by CodingKaiser over 3 years ago - 2 comments

#269 - Update examples with new wrapper

Issue - State: closed - Opened by matthdsm over 3 years ago - 18 comments
Labels: bug

#267 - `summary(run_metrics, 'Lane')` : Cluster vs Read count

Issue - State: closed - Opened by sklages over 3 years ago - 3 comments

#266 - Q: Q>=30 fraction per barcode (== library) per lane

Issue - State: closed - Opened by sklages over 3 years ago - 7 comments

#265 - Extract metrics by cycle with python

Issue - State: closed - Opened by rpwang over 3 years ago - 2 comments

#264 - Q: Python: summary(run_metrics, 'Lane'/'Read') -> 'IsIndex' returns 78/89

Issue - State: closed - Opened by sklages over 3 years ago - 3 comments

#263 - Issue-262: Fix bugs with index tables in core.py

Pull Request - State: closed - Opened by ezralanglois over 3 years ago

#262 - Python, New simplified interface: indexing(run_metrics) -> ZeroDivisionError

Issue - State: closed - Opened by sklages over 3 years ago - 7 comments

#261 - Issue-259: Add simple functions with doc test examples

Pull Request - State: closed - Opened by ezralanglois over 3 years ago

#260 - Usage example of dumptext

Issue - State: closed - Opened by CloeP over 3 years ago - 1 comment

#259 - Q: More complete documentation on Python(3) bindings?

Issue - State: closed - Opened by sklages over 3 years ago - 7 comments

#258 - Q: Run layout from InterOp?

Issue - State: closed - Opened by sklages over 3 years ago - 1 comment

#257 - interop imaging table header doesn't match data

Issue - State: closed - Opened by matthdsm over 3 years ago - 6 comments

#256 - Q: Plotting %Occ vs %PF

Issue - State: closed - Opened by sklages over 3 years ago - 4 comments

#255 - % of Clusters Passing Filter

Issue - State: closed - Opened by kate-simonova over 3 years ago - 2 comments

#254 - Cycles per reads including index cycles - python

Issue - State: closed - Opened by iab-bioinformatics almost 4 years ago - 2 comments

#253 - how to get % >=q30, % PhiX aligned and % demultiplexed at library level

Issue - State: closed - Opened by yelekley almost 4 years ago - 1 comment

#252 - Fix linux Python wheel deploy

Pull Request - State: closed - Opened by ezralanglois almost 4 years ago - 2 comments