Ecosyste.ms: Issues

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GitHub / Illumina/SpliceAI issues and pull requests

#56 - Performance Warnings with Tensorflow 2.3.0

Issue - State: closed - Opened by segoerge over 4 years ago - 3 comments

#55 - Refactor get_delta_scores(..) to allow access to raw absolute scores.

Issue - State: closed - Opened by bw2 over 4 years ago - 2 comments

#54 - Feature request: Support for multinucleotide deletion-insertions like CT>TG

Issue - State: closed - Opened by bw2 over 4 years ago - 1 comment

#53 - version info of dependencies

Issue - State: closed - Opened by XiaoleiZ over 4 years ago - 2 comments

#52 - How can I compute SpliceAI scores for non-coding variants?

Issue - State: closed - Opened by bw2 over 4 years ago - 2 comments

#51 - SpliceAI prediction for 2.8kb deletion

Issue - State: closed - Opened by leekaiinthesky over 4 years ago - 5 comments

#50 - ImportError

Issue - State: closed - Opened by greekkey over 4 years ago - 2 comments

#49 - Attribute error

Issue - State: closed - Opened by Swanthana-bioinfo over 4 years ago - 4 comments

#48 - Performance bottleneck

Issue - State: closed - Opened by grayfall over 4 years ago - 14 comments

#47 - GRCh38 Concatenation Issue

Issue - State: closed - Opened by ghost over 4 years ago - 1 comment

#46 - Invalid argument

Issue - State: closed - Opened by Echopei over 4 years ago - 4 comments

#45 - Gene AC068620.1 location

Issue - State: closed - Opened by dglemos over 4 years ago - 3 comments

#44 - SpliceAI - Annotations for all possible substitutions link not working

Issue - State: closed - Opened by esalfati over 4 years ago - 2 comments

#43 - Update precomputed scores link

Pull Request - State: closed - Opened by rybval over 4 years ago - 2 comments

#42 - The basespace link seems to be no longer active

Issue - State: closed - Opened by rybval over 4 years ago - 3 comments

#41 - Let EXON_START and EXON_END entries not end with trailing comma

Pull Request - State: closed - Opened by rybval almost 5 years ago

#40 - Process records in parallel

Pull Request - State: closed - Opened by rybval almost 5 years ago - 1 comment

#39 - custom sequence annotation

Issue - State: closed - Opened by phiweger almost 5 years ago - 4 comments

#38 - Ref too long error

Issue - State: closed - Opened by paul83ross almost 5 years ago - 1 comment

#37 - No training config error

Issue - State: closed - Opened by cnavery almost 5 years ago - 8 comments

#35 - Lacking Support for pandas Version 1.0.0

Issue - State: closed - Opened by austensutherland about 5 years ago - 7 comments

#34 - transcript list does not match prescored transcripts for hg38

Issue - State: closed - Opened by aerval about 5 years ago - 5 comments

#33 - installation issue with conda

Issue - State: closed - Opened by davemcg about 5 years ago - 11 comments

#32 - Different output for same MT variant

Issue - State: closed - Opened by dglemos about 5 years ago - 1 comment

#31 - Top-k calculations

Issue - State: closed - Opened by tkzeng about 5 years ago - 6 comments

#29 - SpliceAI output.vcf equals input.vcf

Issue - State: closed - Opened by ghost about 5 years ago - 8 comments

#28 - Cannot access validated_preds.csv

Issue - State: closed - Opened by gkaraduman about 5 years ago - 3 comments

#26 - discrepancy between pre-computed scores and spliceAI scores

Issue - State: closed - Opened by vibansal over 5 years ago - 4 comments

#22 - Caching wrapper

Issue - State: closed - Opened by holtgrewe over 5 years ago - 9 comments

#20 - Control number of threads

Issue - State: closed - Opened by holtgrewe over 5 years ago - 6 comments

#18 - optimisation, run recommendations

Issue - State: closed - Opened by thedam over 5 years ago - 4 comments

#14 - All possible SNVs for grch37

Issue - State: closed - Opened by CLeib over 5 years ago - 5 comments