Ecosyste.ms: Issues

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GitHub / ISA-tools/mzml2isa issues and pull requests

#50 - Can't install latest version

Issue - State: closed - Opened by terazus almost 2 years ago

#49 - [1.1.0] - import mzml2isa - ValueError: could not find `owl:Ontology` element

Issue - State: closed - Opened by DrYak over 2 years ago - 3 comments
Labels: bug, fixed

#48 - Update `pronto` and drop Python 2 compatibility layer

Pull Request - State: closed - Opened by althonos over 2 years ago - 2 comments

#47 - add support for Python 3.10

Issue - State: closed - Opened by proccaserra over 2 years ago - 6 comments
Labels: enhancement

#46 - allowing higher versions of openpyxl (needed if using Pandas 1.3.4 an…

Pull Request - State: closed - Opened by proccaserra about 3 years ago - 4 comments
Labels: bug

#45 - High memory consumption

Issue - State: open - Opened by sneumann over 4 years ago - 2 comments

#44 - Memora leak ?

Issue - State: closed - Opened by sneumann over 4 years ago - 4 comments

#43 - Pyinstaller fix

Pull Request - State: closed - Opened by Tomnl almost 5 years ago

#42 - v1.0.3 (entry point fix)

Pull Request - State: closed - Opened by Tomnl almost 5 years ago

#40 - fixing templates to clear testing issues, see issue #39

Pull Request - State: closed - Opened by proccaserra over 5 years ago

#39 - change ' Raw data file checksum type' to 'Data file checksum type'

Issue - State: closed - Opened by proccaserra over 5 years ago - 3 comments
Labels: bug, fixed

#38 - Update documentation

Issue - State: open - Opened by Tomnl over 5 years ago

#37 - Refactoring of the mzML / imzML parser

Pull Request - State: closed - Opened by althonos over 6 years ago - 5 comments

#36 - KeyError: 'Spectrum representation' when using imzml files

Issue - State: closed - Opened by khaug over 6 years ago - 3 comments
Labels: bug, fixed

#35 - example data and unit test added

Pull Request - State: closed - Opened by Tomnl over 6 years ago - 1 comment

#34 - Simple unit test and example data

Pull Request - State: closed - Opened by Tomnl over 6 years ago - 2 comments

#33 - Plattform missing for multiple Assays

Issue - State: closed - Opened by sneumann almost 7 years ago - 4 comments

#32 - No license available

Issue - State: closed - Opened by pcm32 almost 7 years ago - 3 comments
Labels: enhancement, implemented

#31 - Additional useful parameters

Issue - State: open - Opened by Tomnl over 7 years ago
Labels: enhancement

#30 - mzML2isa fails on MTBLS 433 (cannot find `softwareRef`)

Issue - State: open - Opened by althonos over 7 years ago
Labels: bug

#29 - "Unknown" scan polarity prevents assay files from being created

Issue - State: open - Opened by khaug almost 8 years ago - 2 comments
Labels: bug

#28 - Platform fix

Pull Request - State: closed - Opened by Tomnl almost 8 years ago - 1 comment

#27 - Second a_assay is missing instrument

Issue - State: closed - Opened by sneumann almost 8 years ago - 3 comments

#26 - New option to allow more control of the out folder

Pull Request - State: closed - Opened by Tomnl almost 8 years ago

#25 - More flexible out folder option

Pull Request - State: closed - Opened by Tomnl almost 8 years ago - 1 comment

#24 - Consider using -o OUT_PATH as-is

Issue - State: closed - Opened by sneumann almost 8 years ago - 3 comments

#23 - Low memory XML decoding (parsing scans iteratively)

Pull Request - State: open - Opened by lomereiter almost 8 years ago - 6 comments

#22 - Profile centroid fix

Pull Request - State: closed - Opened by Tomnl almost 8 years ago

#21 - [imzml] KeyError: 'Spectrum Representation'

Issue - State: closed - Opened by lomereiter almost 8 years ago - 7 comments

#20 - Update of imzML investigation template

Pull Request - State: closed - Opened by Tomnl about 8 years ago

#19 - Windows test

Pull Request - State: closed - Opened by Tomnl about 8 years ago

#18 - Write unittests

Issue - State: closed - Opened by althonos about 8 years ago - 3 comments
Labels: enhancement, implemented

#17 - Windows test

Pull Request - State: closed - Opened by Tomnl about 8 years ago - 1 comment

#16 - updated appveyor to include new mzml2isa commandline usage

Pull Request - State: closed - Opened by Tomnl about 8 years ago - 1 comment

#15 - Failing on Windows Python 2.7

Issue - State: closed - Opened by Tomnl about 8 years ago - 4 comments
Labels: bug

#14 - Use PyFilesystem to support importing from different origins

Issue - State: closed - Opened by althonos about 8 years ago - 1 comment
Labels: enhancement, implemented

#13 - Use a TargetedCollector to build the tree

Issue - State: open - Opened by althonos about 8 years ago
Labels: enhancement

#12 - Acknowledge changes: dev-althonos

Pull Request - State: closed - Opened by althonos about 8 years ago

#11 - Appveyor

Pull Request - State: closed - Opened by Tomnl over 8 years ago - 5 comments

#10 - Appveyor

Pull Request - State: closed - Opened by Tomnl over 8 years ago

#9 - Remove large files in git history

Issue - State: open - Opened by Tomnl over 8 years ago - 1 comment
Labels: enhancement

#8 - Windows testing (AppVeyor)

Issue - State: closed - Opened by Tomnl over 8 years ago - 2 comments

#7 - Non-trivial study setups

Issue - State: open - Opened by althonos over 8 years ago - 4 comments
Labels: enhancement

#6 - lxml in windows (pip install)

Issue - State: closed - Opened by althonos over 8 years ago - 8 comments

#5 - Missing unitCvRef in cvParam with units cause crash

Issue - State: open - Opened by althonos over 8 years ago
Labels: bug

#4 - Multiple instrument configuration mismatch

Issue - State: open - Opened by althonos over 8 years ago
Labels: bug

#3 - Remove m/z range and time range of imzML meta

Issue - State: open - Opened by althonos over 8 years ago
Labels: enhancement

#2 - Merging changes from Martin's (althonos) repo to Tom's (tomnl)

Pull Request - State: closed - Opened by Tomnl over 8 years ago - 8 comments

#1 - Transfer ownership

Issue - State: closed - Opened by althonos over 8 years ago - 6 comments