Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ISA-tools/isa-api issues and pull requests

#464 - Develop

Pull Request - State: closed - Opened by terazus about 2 years ago - 1 comment

#463 - Dom fix versions

Pull Request - State: closed - Opened by terazus about 2 years ago - 1 comment

#462 - pandas incompatibility (isatools bioconda distribution)

Issue - State: closed - Opened by vedina about 2 years ago - 6 comments

#461 - Refactor isatab deprecated functions for galaxy

Issue - State: open - Opened by terazus about 2 years ago
Labels: clean-up

#460 - Develop

Pull Request - State: closed - Opened by terazus about 2 years ago - 1 comment

#459 - Dom refactor tab

Pull Request - State: closed - Opened by terazus about 2 years ago - 1 comment

#458 - bug in create mode

Issue - State: closed - Opened by proccaserra over 2 years ago

#457 - Phil fix charax

Pull Request - State: closed - Opened by proccaserra over 2 years ago - 1 comment

#456 - Merged from master

Pull Request - State: closed - Opened by terazus over 2 years ago

#454 - Develop

Pull Request - State: closed - Opened by terazus over 2 years ago

#453 - Dom model refactor

Pull Request - State: closed - Opened by terazus over 2 years ago

#452 - Dom model refactor

Pull Request - State: closed - Opened by terazus over 2 years ago

#451 - usage/installation on Mac M1 chip

Issue - State: closed - Opened by gordondavies over 2 years ago - 3 comments

#450 - Dom model refactor patch 3

Pull Request - State: closed - Opened by proccaserra over 2 years ago - 1 comment

#449 - Dom model refactor patch 1

Pull Request - State: closed - Opened by terazus over 2 years ago

#448 - Dom model refactor patch 1

Pull Request - State: closed - Opened by proccaserra over 2 years ago

#447 - removed json2jsonLD for release

Pull Request - State: closed - Opened by terazus over 2 years ago - 10 comments

#446 - Error when opening Metabolights study MTBLS719

Issue - State: closed - Opened by pkrog over 2 years ago - 10 comments

#445 - Phil fix

Pull Request - State: closed - Opened by proccaserra over 2 years ago

#444 - reordering requirements.txt file

Pull Request - State: closed - Opened by proccaserra over 2 years ago - 1 comment

#443 - make new release

Issue - State: open - Opened by proccaserra over 2 years ago
Labels: normal priority

#442 - review open branches

Issue - State: open - Opened by proccaserra over 2 years ago
Labels: high priority

#441 - Prs fix isascreate

Pull Request - State: closed - Opened by proccaserra over 2 years ago - 1 comment

#439 - Organise requirements by alphabetic order

Issue - State: open - Opened by terazus over 2 years ago

#433 - Add @id to ISA JSON schemas

Issue - State: closed - Opened by proccaserra almost 3 years ago

#432 - 'TypeError: Could not resolve data type labeled:' when conversion from Tab to JSON

Issue - State: closed - Opened by casper937 almost 3 years ago - 12 comments

#428 - Issue with changes to pandas ParserError in pandas v1.3.4

Issue - State: closed - Opened by Gscorreia89 about 3 years ago - 3 comments

#421 - utf-8 encoded json fails UTF-8 check

Issue - State: closed - Opened by rabuono about 3 years ago - 1 comment

#420 - samples not well serialized in JSON?

Issue - State: closed - Opened by jgranduel about 3 years ago - 4 comments

#407 - BDD: Behave not compatible with Pandas v1.3.0+

Issue - State: closed - Opened by Zigur over 3 years ago

#405 - Enhancements/study create ontoann

Pull Request - State: closed - Opened by Zigur over 3 years ago

#402 - Added in explicit conversion to string type.

Pull Request - State: closed - Opened by J-81 over 3 years ago - 1 comment

#400 - Comment[] attached to Characteristics are not serialized

Issue - State: closed - Opened by proccaserra over 3 years ago - 2 comments

#396 - Isa cookbook

Pull Request - State: closed - Opened by proccaserra over 3 years ago - 1 comment

#395 - [WIP] Missing comments in ISA-JSON/ISA-TAB

Pull Request - State: closed - Opened by Zigur over 3 years ago - 3 comments

#392 - write_assay_table_files not working

Issue - State: closed - Opened by casper937 over 3 years ago - 5 comments

#390 - ISA cookbook - broken logo image links on all Hands-on practicals pages

Issue - State: closed - Opened by djcomlab over 3 years ago
Labels: doc

#388 - Invalid JSON in isa_study_design_element_schema.json

Issue - State: closed - Opened by jake-emerson over 3 years ago - 4 comments
Labels: enhancement

#380 - File extension

Pull Request - State: closed - Opened by Zigur almost 4 years ago - 1 comment

#376 - Add publication details readme

Pull Request - State: closed - Opened by djcomlab almost 4 years ago - 1 comment
Labels: doc

#375 - Add support for "Image Data File"

Issue - State: open - Opened by proccaserra almost 4 years ago
Labels: enhancement, new feature

#373 - Assay improvements - issues #369, #370

Pull Request - State: closed - Opened by Zigur about 4 years ago - 5 comments
Labels: enhancement

#367 - Observational variables

Pull Request - State: closed - Opened by Zigur about 4 years ago - 1 comment
Labels: new feature

#366 - mtbls assay dict creation + test

Pull Request - State: closed - Opened by proccaserra about 4 years ago - 1 comment

#362 - Parsing ISA tab to JSON

Issue - State: closed - Opened by CS76 about 4 years ago

#359 - assay serialization to tab - fixing NMR output

Pull Request - State: closed - Opened by proccaserra over 4 years ago - 2 comments
Labels: bug, discussion required

#354 - allow ISA-Tab serializer to use double quotes

Issue - State: closed - Opened by proccaserra over 4 years ago
Labels: enhancement

#353 - Writing big study/assay files

Issue - State: closed - Opened by Thyra almost 5 years ago - 4 comments
Labels: enhancement

#352 - Handling quantitative fields in FactorValues (and possibly OntologyAnnotation and Chars)

Issue - State: closed - Opened by Zigur almost 5 years ago - 2 comments
Labels: enhancement, discussion required

#351 - isatools pip3.5 install has naming collision with mzml2isa

Issue - State: closed - Opened by podonnellalidyne almost 5 years ago - 1 comment
Labels: enhancement

#339 - Factor values issue

Issue - State: closed - Opened by bedroesb about 5 years ago - 16 comments
Labels: doc

#326 - Feature/study design timeline

Pull Request - State: closed - Opened by Zigur over 5 years ago - 1 comment

#319 - Missing protocol parameters cause errors

Issue - State: closed - Opened by khaug about 6 years ago - 1 comment
Labels: enhancement

#316 - Add Code Contributor Guidelines (covering coding style and process + examples)

Issue - State: open - Opened by djcomlab over 6 years ago - 1 comment
Labels: doc, low priority

#279 - Add function to remove protocols declared but not used

Issue - State: open - Opened by agbeltran almost 7 years ago
Labels: enhancement, new feature, low priority

#278 - Minor change in isatab validator message

Pull Request - State: closed - Opened by agbeltran almost 7 years ago - 1 comment

#277 - Minor change to warning message in isatab validator

Pull Request - State: closed - Opened by agbeltran almost 7 years ago

#275 - Custom label mapping for materials and filenames

Issue - State: closed - Opened by djcomlab almost 7 years ago - 1 comment
Labels: new feature

#165 - a function to merge 2 isa-tab files

Issue - State: closed - Opened by proccaserra almost 8 years ago - 2 comments
Labels: new feature

#153 - sra2isa conversion: add support for SRA Pool/Pool_Member representation

Issue - State: open - Opened by proccaserra about 8 years ago
Labels: bug, convert, low priority

#115 - ISA validator GUI tool, like jsonlint

Issue - State: closed - Opened by djcomlab over 8 years ago - 1 comment
Labels: new feature

#112 - Test data for ISA JSON configurations

Issue - State: closed - Opened by djcomlab over 8 years ago - 2 comments
Labels: enhancement, stale

#105 - Remove samples list from assay schema since it links to study samples declared already

Issue - State: closed - Opened by djcomlab over 8 years ago - 7 comments
Labels: enhancement

#99 - Consider guidelines to include curator information in the ISA model

Issue - State: closed - Opened by agbeltran over 8 years ago
Labels: doc

#97 - Attach factor values to raw data files

Issue - State: closed - Opened by agbeltran over 8 years ago
Labels: enhancement

#60 - Consider characteristics with ontology annotations

Issue - State: closed - Opened by agbeltran almost 9 years ago - 1 comment
Labels: enhancement, discussion required

#51 - Incorporate ISA default configurations in ISA object creation functionality

Issue - State: closed - Opened by agbeltran almost 9 years ago - 3 comments
Labels: new feature, create, discussion required

#29 - JSON-LD representation for ISA v1

Issue - State: closed - Opened by agbeltran almost 9 years ago - 2 comments
Labels: new feature