INCATools/kgcl issues and pull requests

#87 - Update dependencies and rebuild artifacts

Pull Request - State: closed - Opened by caufieldjh 11 days ago - 2 comments

#86 - Fix bioportal view of KGCL

Issue - State: open - Opened by cmungall 15 days ago - 2 comments

#85 - Make it obvious where to get the different artefacts from

Issue - State: open - Opened by cmungall 16 days ago - 6 comments

#84 - check that we deal with obsoletion workflows and dangling classes

Issue - State: open - Opened by nlharris 2 months ago - 3 comments

#83 - update descriptions of ClassCreation and ObjectPropertyCreation

Pull Request - State: open - Opened by nlharris 3 months ago - 1 comment

#82 - Unify handling of labels in place of CURIEs

Issue - State: open - Opened by cmungall 3 months ago - 3 comments

#81 - Remove `node_id` and replace with `about_node` for `ClassCreation` and `NodeCreation`

Pull Request - State: closed - Opened by hrshdhgd 3 months ago

#80 - have actions post error as comment?

Issue - State: open - Opened by balhoff 4 months ago

#79 - Map to COnto-diff change language

Issue - State: open - Opened by cmungall 5 months ago

#78 - Improve examples

Issue - State: open - Opened by cmungall 5 months ago - 1 comment

#77 - Align KGCL and taxonomy with prior work

Issue - State: open - Opened by cmungall 6 months ago - 1 comment

#76 - Add ability to add comments to obsoletions

Issue - State: open - Opened by cmungall 7 months ago

#75 - `isinstance()` instead of `eval`

Pull Request - State: closed - Opened by hrshdhgd 8 months ago

#74 - Added render_entity where necessary

Pull Request - State: closed - Opened by hrshdhgd 8 months ago

#73 - Add `SynonymReplacement`

Pull Request - State: closed - Opened by hrshdhgd 8 months ago

#72 - Consider a replace keyword command

Issue - State: open - Opened by cmungall 8 months ago

#71 - Add a variant of the obsoletion workflow to add OBSOLETE to definition

Issue - State: open - Opened by cmungall 8 months ago

#70 - Formally describe bundled and triggered changes (workflows)

Issue - State: open - Opened by cmungall 8 months ago - 2 comments

#69 - Removes extra single and double quotes from entities

Pull Request - State: closed - Opened by hrshdhgd 8 months ago

#68 - Remove x_representation fields

Issue - State: open - Opened by cmungall 8 months ago - 1 comment

#67 - Refactor code to avoid unnecessary delay in code

Pull Request - State: closed - Opened by hrshdhgd 8 months ago

#66 - The grammar should return clean objects

Issue - State: open - Opened by cmungall 8 months ago

#65 - Prepare 1.0.0 release

Issue - State: open - Opened by cmungall 8 months ago

#64 - parsing rename commands take a long time

Issue - State: closed - Opened by cmungall 8 months ago - 1 comment

#63 - Doc update with images

Pull Request - State: closed - Opened by hrshdhgd 8 months ago

#62 - implementing add to and remove from subset commands

Pull Request - State: closed - Opened by cmungall 9 months ago

#61 - AddNodeToSubset

Issue - State: closed - Opened by cmungall 9 months ago - 1 comment

#60 - Handling of language tags in KGCL

Issue - State: open - Opened by cmungall 9 months ago - 5 comments

#59 - Add visualization of KGCL hierarchy

Pull Request - State: closed - Opened by caufieldjh 9 months ago - 2 comments

#58 - Collect more information for Synonym proposals

Issue - State: open - Opened by twhetzel 9 months ago - 2 comments

#57 - What’s the difference between `NodeAnnotationChange` and `NodeMetadataAssertionChange`?

Issue - State: open - Opened by gouttegd 9 months ago

#56 - Creating a new class with an auto-allocated ID

Issue - State: open - Opened by gouttegd 9 months ago - 6 comments

#55 - Roll back kgcl to kgcl-shcema in dir structure

Pull Request - State: closed - Opened by hrshdhgd 9 months ago

#54 - Refactored project

Pull Request - State: closed - Opened by hrshdhgd 9 months ago

#53 - Why do `EdgeChange` operations have both an `about_edge` and {`subject`, `predicate`, `object`} slots?

Issue - State: open - Opened by gouttegd 9 months ago

#52 - Non-obvious side-effects of KGCL changes should be explicitly specified

Issue - State: open - Opened by gouttegd 9 months ago

#51 - Ran `make all` to update files

Pull Request - State: closed - Opened by hrshdhgd 9 months ago - 1 comment

#50 - The `change_date` slot should be date-typed

Issue - State: open - Opened by gouttegd 10 months ago

#49 - How to deal with proposed obsoletions (or proposed changes) overall

Issue - State: open - Opened by cmungall 10 months ago - 22 comments

#48 - Reconfigure OWL export

Issue - State: closed - Opened by cmungall 10 months ago

#47 - Simplify loading from prefixmaps

Pull Request - State: closed - Opened by cthoyt almost 1 year ago - 6 comments

#46 - Ran poetry update after change `curies` version range

Pull Request - State: closed - Opened by hrshdhgd about 1 year ago

#45 - Fix URL to point to the correct repository

Pull Request - State: closed - Opened by hrshdhgd about 1 year ago

#44 - Add example for adding xrefs

Issue - State: open - Opened by cthoyt about 1 year ago

#43 - update poetry

Pull Request - State: closed - Opened by hrshdhgd about 1 year ago

#42 - Remove dependency on bioregistry.

Pull Request - State: closed - Opened by cmungall over 1 year ago

#41 - How to identify the target subset in subset membership change operations?

Issue - State: closed - Opened by gouttegd over 1 year ago - 1 comment

#40 - What is the intended mechanism to deal with quote characters in values?

Issue - State: open - Opened by gouttegd over 1 year ago

#39 - Manipulating synonym types

Issue - State: open - Opened by gouttegd over 1 year ago

#38 - How strict should a KGCL applicator be?

Issue - State: open - Opened by gouttegd over 1 year ago

#37 - Using CamelCase for classes and snake_case for slots

Pull Request - State: closed - Opened by cmungall over 1 year ago

#36 - Remove About section from index page

Pull Request - State: closed - Opened by sujaypatil96 over 1 year ago

#35 - Added `obsolete` command examples.

Pull Request - State: closed - Opened by hrshdhgd over 1 year ago

#34 - Custom jinja template for hierarchical indentation of classes on index page

Pull Request - State: closed - Opened by sujaypatil96 over 1 year ago - 1 comment

#33 - bump linkml version

Pull Request - State: closed - Opened by cmungall over 1 year ago

#32 - bump-linkml

Pull Request - State: closed - Opened by cmungall over 1 year ago

#31 - regen

Pull Request - State: closed - Opened by cmungall over 1 year ago

#30 - remove bioregistry dependency

Issue - State: open - Opened by cmungall over 1 year ago

#29 - new change types

Pull Request - State: closed - Opened by cmungall over 1 year ago

#28 - RemoveTextDefinition

Pull Request - State: closed - Opened by hrshdhgd over 1 year ago

#27 - Update definition of an existing class

Pull Request - State: closed - Opened by hrshdhgd over 1 year ago

#26 - Add `NewTextDefinition`

Pull Request - State: closed - Opened by hrshdhgd over 1 year ago

#25 - Remove synonym

Pull Request - State: closed - Opened by hrshdhgd over 1 year ago

#24 - update bioregistry to fix https://github.com/biopragmatics/bioregistry/issues/705

Pull Request - State: closed - Opened by sierra-moxon over 1 year ago - 1 comment

#23 - update bioregistry dependency to ^0.6.0

Issue - State: closed - Opened by sierra-moxon over 1 year ago - 2 comments

#22 - new change types

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#21 - Update documentation

Pull Request - State: closed - Opened by hrshdhgd almost 2 years ago

#20 - bump up linkml to v1.3.16

Pull Request - State: closed - Opened by sujaypatil96 almost 2 years ago

#19 - fixing namespace in example

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#18 - DO NOT MERGE: null change for testing

Pull Request - State: closed - Opened by sujaypatil96 almost 2 years ago

#17 - register KGCL with LOV and BioPortal

Issue - State: closed - Opened by cmungall almost 2 years ago - 2 comments

#16 - use latest docgen templates

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#15 - Added replacement to parse while node obsoletion.

Pull Request - State: closed - Opened by hrshdhgd about 2 years ago

#14 - use more intuitive syntax for class creation

Issue - State: open - Opened by cmungall about 2 years ago

#13 - ensure grammar is aligned with string_serialization in yaml

Issue - State: open - Opened by cmungall about 2 years ago - 3 comments

#12 - Support arbitrary axiom annotations

Issue - State: open - Opened by matentzn about 2 years ago - 4 comments

#11 - Just ran `poetry update`

Pull Request - State: closed - Opened by hrshdhgd about 2 years ago

#10 - Fix rendering

Pull Request - State: closed - Opened by hrshdhgd about 2 years ago

#9 - Fix rendering

Issue - State: closed - Opened by cmungall about 2 years ago

#8 - Bracket issue

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#7 - modify grammar to remove need for <>s on URIs

Issue - State: closed - Opened by cmungall over 2 years ago - 1 comment

#6 - Convert IRI -> CURIE using `bioregistry` while `parse`-ing a KGCL command.

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#5 - Removing packages now in kgcl-rdflib

Pull Request - State: closed - Opened by cmungall over 2 years ago

#4 - rename to kgcl_schema

Pull Request - State: closed - Opened by cmungall over 2 years ago

#3 - multiple changes

Pull Request - State: closed - Opened by cmungall over 2 years ago

#2 - Workflow for running pytest in GH Actions

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#1 - add workflow for pypi publish

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

GitHub / INCATools/kgcl issues and pull requests