Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / IMSY-DKFZ/simpa issues and pull requests

#238 - speed up `assert_array_well_defined()`

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#237 - GEL_LAYER_HEIGHT in simulate_3d

Issue - State: open - Opened by faberno over 1 year ago
Labels: bug, good first issue

#236 - Improve generate_mcx_bin_input performance

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#234 - use process unique file naming for kwave files

Pull Request - State: open - Opened by jnoelke over 1 year ago

#233 - Time_series

Issue - State: closed - Opened by mojgan-zare over 1 year ago - 9 comments

#232 - Trouble during installation (UnicodeDecodeError)

Issue - State: open - Opened by cwsbest over 1 year ago - 1 comment

#231 - Develop

Pull Request - State: closed - Opened by kdreher over 1 year ago

#230 - Merge develop into main

Pull Request - State: closed - Opened by kdreher over 1 year ago

#229 - Bump myst-parser from 0.18.1 to 1.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#228 - Bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, github_actions

#227 - Bump actions/checkout from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, github_actions

#226 - Bump JRubics/poetry-publish from 1.16 to 1.17

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, github_actions

#225 - Develop

Pull Request - State: closed - Opened by kdreher over 1 year ago

#224 - Improve performance and reduce memory use of mcx io

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#223 - Bug: ACOUSTIC_SIMULATION_3D is ignored

Issue - State: open - Opened by faberno over 1 year ago
Labels: good first issue

#222 - Negative fraction of muscle_scatterer in soft_tissue

Issue - State: open - Opened by dkalsan over 1 year ago

#220 - Video of optical simulation

Issue - State: open - Opened by cbender98 over 1 year ago
Labels: feature

#219 - Bump requests from 2.28.2 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#218 - T217 GaussianBeam bug + focal length

Pull Request - State: closed - Opened by faberno almost 2 years ago

#217 - GaussianBeamIlluminationGeometry: Add focal length and bugfix

Issue - State: closed - Opened by faberno almost 2 years ago

#216 - Injects git commit hash

Pull Request - State: closed - Opened by TomTomRixRix almost 2 years ago - 1 comment

#214 - Wrong normalization in SlitIlluminationGeometry

Issue - State: open - Opened by faberno almost 2 years ago
Labels: good first issue

#213 - Bump markdown-it-py from 2.1.0 to 2.2.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#212 - Add pre-commit hooks to the repo

Pull Request - State: closed - Opened by TomTomRixRix almost 2 years ago

#211 - Dead links in getting started markdown

Issue - State: open - Opened by TomTomRixRix almost 2 years ago
Labels: bug, good first issue

#210 - Create template for pull requests

Pull Request - State: closed - Opened by seitela almost 2 years ago
Labels: feature

#209 - Update issue templates

Pull Request - State: closed - Opened by seitela almost 2 years ago

#208 - Fix randomness in vessel tree test

Issue - State: open - Opened by TomTomRixRix almost 2 years ago
Labels: bug, testing

#207 - T206 io bottleneck

Pull Request - State: closed - Opened by jnoelke almost 2 years ago

#206 - I/O bottleneck

Issue - State: open - Opened by jnoelke almost 2 years ago

#205 - Default data fields in FieldOfViewCropping

Issue - State: open - Opened by mschllnbrg almost 2 years ago
Labels: bug, good first issue

#203 - T202 head and neck

Pull Request - State: closed - Opened by mschllnbrg almost 2 years ago

#202 - Adding Lymph Node as new Tissue Type

Issue - State: open - Opened by mschllnbrg almost 2 years ago
Labels: feature

#201 - kWaveArray addition now included in kWave 1.4

Issue - State: closed - Opened by faberno about 2 years ago - 1 comment

#200 - T199: using rfft and window function correction (considering edge cases)

Pull Request - State: closed - Opened by cbender98 about 2 years ago

#199 - Weird Things in Tukey Bandpass Filter

Issue - State: open - Opened by cbender98 about 2 years ago

#198 - Incompatible with latest Numpy version

Issue - State: closed - Opened by tomelse about 2 years ago - 2 comments

#197 - Develop

Pull Request - State: closed - Opened by kdreher about 2 years ago

#196 - T191 numpy types

Pull Request - State: closed - Opened by kdreher about 2 years ago

#195 - IPASC data format export

Issue - State: open - Opened by jgroehl about 2 years ago - 1 comment

#194 - Quick fix: Upper bound for numpy version

Pull Request - State: closed - Opened by TomTomRixRix about 2 years ago - 1 comment

#193 - PyPI management with github actions

Issue - State: closed - Opened by jgroehl about 2 years ago - 4 comments

#192 - Troubleshooting during installation

Issue - State: open - Opened by TomTomRixRix about 2 years ago
Labels: documentation, good first issue

#191 - Fix `numpy` to <1.24.0

Issue - State: closed - Opened by TomTomRixRix about 2 years ago - 1 comment
Labels: bug, good first issue

#190 - T187 bump jdata version (#188)

Pull Request - State: closed - Opened by leoyala about 2 years ago

#189 - Understanding initial pressure values

Issue - State: closed - Opened by MengjieSHI about 2 years ago - 5 comments

#188 - T187 bump jdata version

Pull Request - State: closed - Opened by leoyala about 2 years ago

#187 - Fix `jdata` dependency to >= 0.5.2

Issue - State: closed - Opened by leoyala about 2 years ago - 1 comment

#186 - Fluence numpy array is read-only.

Issue - State: closed - Opened by tomelse over 2 years ago - 6 comments

#185 - Bug in KWaveAcousticForwardConvenienceFunction.py

Issue - State: open - Opened by cbender98 over 2 years ago
Labels: bug, testing

#184 - Bug in PointSourceReconstruction.py

Issue - State: open - Opened by cbender98 over 2 years ago - 1 comment
Labels: bug, testing

#183 - T180 Refactoring

Pull Request - State: closed - Opened by jnoelke over 2 years ago - 3 comments

#182 - T115 include bvf

Pull Request - State: closed - Opened by jnoelke over 2 years ago
Labels: hacking week

#181 - Use same FOV definition within different reconstructions

Pull Request - State: closed - Opened by TomTomRixRix over 2 years ago - 6 comments

#180 - Refactoring of input arguments in tissue library

Issue - State: closed - Opened by mschllnbrg over 2 years ago
Labels: good first issue, hacking week

#179 - Incorporate Sensor Degradation Processing Component

Issue - State: open - Opened by cbender98 over 2 years ago
Labels: feature

#178 - includes cup array PType307

Pull Request - State: open - Opened by Holzwarth69126 over 2 years ago - 1 comment

#177 - Include cup array (PType 307) as detection geometry

Issue - State: open - Opened by Holzwarth69126 over 2 years ago

#176 - T162 heterogenous sos

Pull Request - State: open - Opened by cbender98 over 2 years ago - 2 comments

#175 - Structure creation on GPU

Pull Request - State: closed - Opened by TomTomRixRix over 2 years ago - 2 comments

#174 - T77 off by one error

Pull Request - State: closed - Opened by TomTomRixRix over 2 years ago

#173 - Provide git commit hash

Issue - State: open - Opened by TomTomRixRix over 2 years ago - 1 comment
Labels: feature, help wanted

#172 - TissueLibrary and MOLECULE_LIBRARY usage inconsistent

Issue - State: open - Opened by jgroehl over 2 years ago
Labels: good first issue

#171 - Windows tests seem to succeed despite errors

Issue - State: open - Opened by TomTomRixRix over 2 years ago
Labels: bug, testing

#170 - Develop merge

Pull Request - State: closed - Opened by kdreher over 2 years ago

#169 - T152 processing unit

Pull Request - State: closed - Opened by TomTomRixRix over 2 years ago - 1 comment

#168 - T9 additional flags

Pull Request - State: open - Opened by seitela over 2 years ago

#167 - Citation of SIMPA paper

Pull Request - State: closed - Opened by TomTomRixRix over 2 years ago

#166 - Rewrite structure creation for use of GPU

Issue - State: closed - Opened by kdreher over 2 years ago - 6 comments
Labels: hacking day

#165 - Github Actions/workflows/templates

Issue - State: open - Opened by kdreher over 2 years ago - 3 comments
Labels: hacking day

#164 - Consistent Tags

Issue - State: open - Opened by kdreher over 2 years ago - 1 comment
Labels: good first issue, hacking day

#163 - Coordinates and Position Documentation

Issue - State: open - Opened by TomTomRixRix over 2 years ago - 3 comments
Labels: bug, documentation, hacking day

#162 - Incorporation of a heterogenous Speed-of-Sound map in the DAS adapter

Issue - State: open - Opened by cbender98 over 2 years ago - 2 comments
Labels: feature

#161 - Update README.md

Pull Request - State: closed - Opened by chiarasfour over 2 years ago

#160 - Validation Feature of the Manual Tests for the User [Feature-proposal]

Issue - State: open - Opened by cbender98 over 2 years ago
Labels: feature

#159 - Package dependencies error (mistune, docutils)

Issue - State: open - Opened by cbender98 over 2 years ago
Labels: hacking day

#157 - Illumination device positioning bug

Issue - State: open - Opened by jgroehl over 2 years ago - 5 comments

#156 - T154 heterogeneity

Pull Request - State: closed - Opened by jgroehl over 2 years ago - 8 comments
Labels: feature

#155 - T130 in vision refactoring

Pull Request - State: open - Opened by jgroehl over 2 years ago - 1 comment
Labels: bug

#154 - Modelling of heterogeneity

Issue - State: open - Opened by jgroehl over 2 years ago - 2 comments
Labels: feature

#153 - T152 notify cpu reconstruction

Pull Request - State: closed - Opened by Holzwarth69126 over 2 years ago

#152 - Users should get a warning/notification if reconstructions runs on CPU.

Issue - State: open - Opened by Holzwarth69126 over 2 years ago
Labels: hacking day

#151 - Run Tests on push and pull request to develop as well.

Pull Request - State: closed - Opened by jgroehl over 2 years ago - 1 comment

#150 - Develop

Pull Request - State: closed - Opened by kdreher over 2 years ago - 3 comments

#149 - Fixed detector positioning in msot acuity echo

Pull Request - State: closed - Opened by kdreher over 2 years ago - 3 comments

#148 - Fixes #142

Pull Request - State: closed - Opened by kdreher over 2 years ago

#147 - Add version number in hdf5

Pull Request - State: closed - Opened by jnoelke over 2 years ago - 1 comment

#146 - Version number in output file

Issue - State: closed - Opened by jnoelke over 2 years ago

#145 - Implemented #144, partial volume via settings

Pull Request - State: closed - Opened by jnoelke over 2 years ago - 3 comments

#144 - Partial volume in MSOT Acuity

Issue - State: closed - Opened by jnoelke over 2 years ago

#143 - Fixed test that would have detected #139

Pull Request - State: closed - Opened by kdreher over 2 years ago

#142 - Safety margin in check_prerequisites

Issue - State: closed - Opened by jgroehl over 2 years ago - 1 comment
Labels: bug, question

#139 - anisotropy not used correctly in optical_forward_model_mcx_adapter

Issue - State: open - Opened by mschllnbrg over 2 years ago - 4 comments
Labels: bug, CRITICAL

#137 - Rounding fov also in cropping component, fixes #134

Pull Request - State: closed - Opened by TomTomRixRix over 2 years ago
Labels: bug

#136 - Bandpass filtering method KeyError in settings

Issue - State: closed - Opened by TomTomRixRix over 2 years ago
Labels: bug