Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / IMSY-DKFZ/simpa issues and pull requests

#263 - Minimal optical simulation example and diffuse reflectance

Pull Request - State: open - Opened by leoyala 8 months ago

#259 - Simpler minimal optical simulation example

Issue - State: open - Opened by leoyala 11 months ago
Labels: feature

#258 - Bump urllib3 from 2.0.4 to 2.0.7

Pull Request - State: open - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#257 - [1, 1, 1] origin used in MCX

Issue - State: open - Opened by faberno 12 months ago
Labels: bug

#256 - Use pmcx instead of mcx binary

Pull Request - State: open - Opened by lkeegan about 1 year ago

#255 - Bump pillow from 10.0.0 to 10.0.1

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#254 - Bump urllib3 from 2.0.4 to 2.0.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#253 - Use gpu for noise generation if available

Pull Request - State: open - Opened by lkeegan about 1 year ago

#252 - removed gel_layer_height in simulate_3D.m

Pull Request - State: open - Opened by faberno about 1 year ago - 1 comment

#251 - Fix ignored acoustical_simulation_3d

Pull Request - State: open - Opened by faberno about 1 year ago - 1 comment

#250 - added missing spacing to error message

Pull Request - State: open - Opened by faberno about 1 year ago - 1 comment

#249 - Wrong error message in curved_array.check_settings_prerequisites

Issue - State: open - Opened by faberno about 1 year ago
Labels: bug

#248 - Error in minimal_optical_simulation.py

Issue - State: open - Opened by hhapk about 1 year ago - 3 comments

#247 - Saving norm in a variable named norm_direction_vector_mm

Pull Request - State: open - Opened by Kamkarl about 1 year ago - 3 comments
Labels: hacktoberfest-accepted

#246 - Specify mc2 output file format for mcx

Pull Request - State: open - Opened by lkeegan about 1 year ago

#245 - MCX default output file format changed

Issue - State: open - Opened by lkeegan about 1 year ago

#244 - don't run pypi publish action on forks

Pull Request - State: closed - Opened by lkeegan about 1 year ago

#243 - Create simulation volumes on the GPU

Pull Request - State: closed - Opened by lkeegan about 1 year ago - 2 comments

#242 - Reduce gpu ram use in EllipticalTubularStructure

Pull Request - State: closed - Opened by lkeegan about 1 year ago - 1 comment

#241 - Add profile decorator to simpa utils

Pull Request - State: open - Opened by lkeegan about 1 year ago - 5 comments

#240 - T239 wavelength independent volume creation

Pull Request - State: closed - Opened by kdreher about 1 year ago

#239 - Create wavelength-independent data fields only once in a simulation run

Issue - State: closed - Opened by kdreher about 1 year ago
Labels: feature

#238 - speed up `assert_array_well_defined()`

Pull Request - State: closed - Opened by lkeegan about 1 year ago

#237 - GEL_LAYER_HEIGHT in simulate_3d

Issue - State: open - Opened by faberno about 1 year ago
Labels: bug, good first issue

#236 - Improve generate_mcx_bin_input performance

Pull Request - State: closed - Opened by lkeegan about 1 year ago

#234 - use process unique file naming for kwave files

Pull Request - State: open - Opened by jnoelke about 1 year ago

#233 - Time_series

Issue - State: closed - Opened by mojgan-zare about 1 year ago - 9 comments

#232 - Trouble during installation (UnicodeDecodeError)

Issue - State: open - Opened by cwsbest about 1 year ago - 1 comment

#231 - Develop

Pull Request - State: closed - Opened by kdreher about 1 year ago

#230 - Merge develop into main

Pull Request - State: closed - Opened by kdreher about 1 year ago

#229 - Bump myst-parser from 0.18.1 to 1.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#228 - Bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#227 - Bump actions/checkout from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#226 - Bump JRubics/poetry-publish from 1.16 to 1.17

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#225 - Develop

Pull Request - State: closed - Opened by kdreher about 1 year ago

#224 - Improve performance and reduce memory use of mcx io

Pull Request - State: closed - Opened by lkeegan about 1 year ago

#223 - Bug: ACOUSTIC_SIMULATION_3D is ignored

Issue - State: open - Opened by faberno about 1 year ago
Labels: good first issue

#222 - Negative fraction of muscle_scatterer in soft_tissue

Issue - State: open - Opened by dkalsan over 1 year ago

#220 - Video of optical simulation

Issue - State: open - Opened by cbender98 over 1 year ago
Labels: feature

#219 - Bump requests from 2.28.2 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#218 - T217 GaussianBeam bug + focal length

Pull Request - State: closed - Opened by faberno over 1 year ago

#216 - Injects git commit hash

Pull Request - State: open - Opened by TomTomRixRix over 1 year ago

#214 - Wrong normalization in SlitIlluminationGeometry

Issue - State: open - Opened by faberno over 1 year ago
Labels: good first issue

#213 - Bump markdown-it-py from 2.1.0 to 2.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#212 - Add pre-commit hooks to the repo

Pull Request - State: closed - Opened by TomTomRixRix over 1 year ago

#211 - Dead links in getting started markdown

Issue - State: open - Opened by TomTomRixRix over 1 year ago
Labels: bug, good first issue

#210 - Create template for pull requests

Pull Request - State: closed - Opened by seitela over 1 year ago
Labels: feature

#209 - Update issue templates

Pull Request - State: closed - Opened by seitela over 1 year ago

#208 - Fix randomness in vessel tree test

Issue - State: open - Opened by TomTomRixRix over 1 year ago
Labels: bug, testing

#207 - T206 io bottleneck

Pull Request - State: closed - Opened by jnoelke over 1 year ago

#206 - I/O bottleneck

Issue - State: open - Opened by jnoelke over 1 year ago

#205 - Default data fields in FieldOfViewCropping

Issue - State: open - Opened by mschllnbrg over 1 year ago
Labels: bug, good first issue

#203 - T202 head and neck

Pull Request - State: closed - Opened by mschllnbrg over 1 year ago

#202 - Adding Lymph Node as new Tissue Type

Issue - State: open - Opened by mschllnbrg over 1 year ago
Labels: feature

#201 - kWaveArray addition now included in kWave 1.4

Issue - State: closed - Opened by faberno over 1 year ago - 1 comment

#199 - Weird Things in Tukey Bandpass Filter

Issue - State: open - Opened by cbender98 over 1 year ago

#198 - Incompatible with latest Numpy version

Issue - State: closed - Opened by tomelse over 1 year ago - 2 comments

#197 - Develop

Pull Request - State: closed - Opened by kdreher over 1 year ago

#196 - T191 numpy types

Pull Request - State: closed - Opened by kdreher over 1 year ago

#195 - IPASC data format export

Issue - State: open - Opened by jgroehl almost 2 years ago - 1 comment

#194 - Quick fix: Upper bound for numpy version

Pull Request - State: closed - Opened by TomTomRixRix almost 2 years ago - 1 comment

#193 - PyPI management with github actions

Issue - State: closed - Opened by jgroehl almost 2 years ago - 4 comments

#192 - Troubleshooting during installation

Issue - State: open - Opened by TomTomRixRix almost 2 years ago
Labels: documentation, good first issue

#191 - Fix `numpy` to <1.24.0

Issue - State: closed - Opened by TomTomRixRix almost 2 years ago - 1 comment
Labels: bug, good first issue

#190 - T187 bump jdata version (#188)

Pull Request - State: closed - Opened by leoyala almost 2 years ago

#189 - Understanding initial pressure values

Issue - State: closed - Opened by MengjieSHI almost 2 years ago - 5 comments

#188 - T187 bump jdata version

Pull Request - State: closed - Opened by leoyala almost 2 years ago

#187 - Fix `jdata` dependency to >= 0.5.2

Issue - State: closed - Opened by leoyala almost 2 years ago - 1 comment

#186 - Fluence numpy array is read-only.

Issue - State: closed - Opened by tomelse almost 2 years ago - 6 comments

#185 - Bug in KWaveAcousticForwardConvenienceFunction.py

Issue - State: open - Opened by cbender98 almost 2 years ago
Labels: bug, testing

#184 - Bug in PointSourceReconstruction.py

Issue - State: open - Opened by cbender98 almost 2 years ago - 1 comment
Labels: bug, testing

#183 - T180 Refactoring

Pull Request - State: open - Opened by jnoelke almost 2 years ago - 3 comments

#182 - T115 include bvf

Pull Request - State: open - Opened by jnoelke almost 2 years ago

#181 - Use same FOV definition within different reconstructions

Pull Request - State: open - Opened by TomTomRixRix almost 2 years ago - 3 comments

#180 - Refactoring of input arguments in tissue library

Issue - State: open - Opened by mschllnbrg almost 2 years ago
Labels: good first issue

#179 - Incorporate Sensor Degradation Processing Component

Issue - State: open - Opened by cbender98 about 2 years ago
Labels: feature

#178 - includes cup array PType307

Pull Request - State: open - Opened by Holzwarth69126 about 2 years ago - 1 comment

#177 - Include cup array (PType 307) as detection geometry

Issue - State: open - Opened by Holzwarth69126 about 2 years ago

#176 - T162 heterogenous sos

Pull Request - State: open - Opened by cbender98 about 2 years ago - 1 comment

#175 - Structure creation on GPU

Pull Request - State: closed - Opened by TomTomRixRix about 2 years ago - 2 comments

#174 - T77 off by one error

Pull Request - State: closed - Opened by TomTomRixRix about 2 years ago

#173 - Provide git commit hash

Issue - State: open - Opened by TomTomRixRix about 2 years ago - 1 comment
Labels: feature, help wanted

#172 - TissueLibrary and MOLECULE_LIBRARY usage inconsistent

Issue - State: open - Opened by jgroehl about 2 years ago
Labels: good first issue

#171 - Windows tests seem to succeed despite errors

Issue - State: open - Opened by TomTomRixRix about 2 years ago
Labels: bug, testing

#170 - Develop merge

Pull Request - State: closed - Opened by kdreher about 2 years ago

#169 - T152 processing unit

Pull Request - State: closed - Opened by TomTomRixRix about 2 years ago - 1 comment

#168 - T9 additional flags

Pull Request - State: open - Opened by seitela about 2 years ago

#167 - Citation of SIMPA paper

Pull Request - State: closed - Opened by TomTomRixRix about 2 years ago

#166 - Rewrite structure creation for use of GPU

Issue - State: closed - Opened by kdreher about 2 years ago - 6 comments
Labels: hacking day

#165 - Github Actions/workflows/templates

Issue - State: open - Opened by kdreher about 2 years ago - 3 comments
Labels: hacking day

#164 - Consistent Tags

Issue - State: open - Opened by kdreher about 2 years ago - 1 comment
Labels: good first issue, hacking day