Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / IGS/gEAR issues and pull requests

#684 - V2 - Expression/Projection View - Fix full-width "expression-only" tSNE displays

Issue - State: open - Opened by adkinsrs 7 months ago - 1 comment
Labels: bug, Low Priority

#683 - V2 - Add "create URL" button from expression and projection pages

Issue - State: open - Opened by adkinsrs 7 months ago - 4 comments
Labels: enhancement

#681 - Fixing bug where single-gene curator would not plot

Pull Request - State: closed - Opened by adkinsrs 7 months ago

#680 - Resolves #678

Pull Request - State: closed - Opened by adkinsrs 7 months ago

#679 - Bugfix 678 beta comparison tool fails to show conditions after selecting a dataset

Pull Request - State: closed - Opened by adkinsrs 7 months ago - 2 comments

#678 - Beta comparison tool fails to show conditions after selecting a dataset

Issue - State: closed - Opened by jorvis 7 months ago
Labels: bug

#677 - Use GCP resources to auto-shut down devel VMs if idle or off-business hrs

Issue - State: open - Opened by adkinsrs 7 months ago
Labels: enhancement

#676 - Update SSL keys on devel

Issue - State: closed - Opened by jorvis 7 months ago

#675 - Add (even temporary) support to disable downloads of selected datasets

Issue - State: closed - Opened by jorvis 7 months ago - 1 comment

#674 - V2 - update URL shortener "p" page

Issue - State: open - Opened by adkinsrs 7 months ago
Labels: bug

#673 - Gene expression

Issue - State: open - Opened by gear-portal-team 7 months ago - 2 comments

#671 - Refactor dataset collection page for ui-v2

Issue - State: open - Opened by adkinsrs 8 months ago

#671 - Refactor dataset collection page for ui-v2

Issue - State: open - Opened by adkinsrs 8 months ago

#670 - Test upgrading scanpy/anndata

Issue - State: open - Opened by adkinsrs 8 months ago - 2 comments
Labels: enhancement, in_progress, code cleanup

#669 - Issue with clustering

Issue - State: open - Opened by gear-portal-team 8 months ago - 4 comments

#669 - Issue with clustering

Issue - State: open - Opened by gear-portal-team 8 months ago - 4 comments

#668 - Color customization in static tSNE/UMAP scatter plots

Issue - State: closed - Opened by carlocolantuoni 8 months ago - 6 comments
Labels: enhancement, PostProjectionTASKS, High Priority

#668 - Color customization in static tSNE/UMAP scatter plots

Issue - State: closed - Opened by carlocolantuoni 8 months ago - 6 comments
Labels: enhancement, PostProjectionTASKS, High Priority

#667 - High resolution .png download for static tSNE/MAP scatter plots

Issue - State: open - Opened by carlocolantuoni 8 months ago - 25 comments
Labels: enhancement, PostProjectionTASKS, High Priority

#666 - When projecting a weighted gene cart, if all weights are 1 or 0, then add "binary gene count" projection option

Issue - State: closed - Opened by carlocolantuoni 8 months ago - 2 comments
Labels: enhancement, PostProjectionTASKS

#666 - When projecting a weighted gene cart, if all weights are 1 or 0, then add "binary gene count" projection option

Issue - State: closed - Opened by carlocolantuoni 8 months ago - 2 comments
Labels: enhancement, PostProjectionTASKS

#665 - UI-V2 - Potential race condition loading plugins

Issue - State: closed - Opened by adkinsrs 8 months ago - 1 comment
Labels: bug

#665 - UI-V2 - Potential race condition loading plugins

Issue - State: closed - Opened by adkinsrs 8 months ago - 1 comment
Labels: bug

#664 - Ability to do some common expression normalizations in the dataset curators

Issue - State: open - Opened by JPReceveur 8 months ago - 6 comments
Labels: enhancement

#664 - Ability to do some common expression normalizations in the dataset curators

Issue - State: open - Opened by JPReceveur 8 months ago - 6 comments
Labels: enhancement

#663 - sc Workbench primary analysis error for non-tsne/umap coordinates

Issue - State: open - Opened by JPReceveur 8 months ago - 3 comments
Labels: bug

#663 - sc Workbench primary analysis error for non-tsne/umap coordinates

Issue - State: open - Opened by JPReceveur 8 months ago - 3 comments
Labels: bug

#661 - Missing dataset in beta

Issue - State: open - Opened by echrysostomou 9 months ago

#661 - Missing dataset in beta

Issue - State: open - Opened by echrysostomou 9 months ago

#660 - Refactor user account creation page for UI-V2

Issue - State: open - Opened by jorvis 9 months ago
Labels: enhancement, 8

#660 - Refactor user account creation page for UI-V2

Issue - State: open - Opened by jorvis 9 months ago
Labels: enhancement, 8

#659 - Ensure history recording functions on main are also on ui-v2 branch

Issue - State: closed - Opened by jorvis 9 months ago - 1 comment
Labels: enhancement, 4

#659 - Ensure history recording functions on main are also on ui-v2 branch

Issue - State: closed - Opened by jorvis 9 months ago - 1 comment
Labels: enhancement, 4

#658 - Download Raw or Seurat Object

Issue - State: closed - Opened by gear-portal-team 9 months ago - 1 comment

#658 - Download Raw or Seurat Object

Issue - State: closed - Opened by gear-portal-team 9 months ago - 1 comment

#657 - Gene Collection Selector - Error when selecting "Recent"

Issue - State: closed - Opened by adkinsrs 9 months ago - 1 comment
Labels: bug

#657 - Gene Collection Selector - Error when selecting "Recent"

Issue - State: closed - Opened by adkinsrs 9 months ago - 1 comment
Labels: bug

#656 - ui-v2 Refactor projection search page

Issue - State: closed - Opened by adkinsrs 9 months ago - 1 comment
Labels: in_progress

#656 - ui-v2 Refactor projection search page

Issue - State: closed - Opened by adkinsrs 9 months ago - 1 comment
Labels: in_progress

#655 - UI v2 height addition

Pull Request - State: closed - Opened by adkinsrs 9 months ago - 2 comments

#655 - UI v2 height addition

Pull Request - State: closed - Opened by adkinsrs 9 months ago - 2 comments

#654 - UI v2 height addition

Pull Request - State: closed - Opened by adkinsrs 9 months ago

#654 - UI v2 height addition

Pull Request - State: closed - Opened by adkinsrs 9 months ago

#653 - Gene Mapping System Used in Inner Ear Organoid (Steinhart) Dataset

Issue - State: closed - Opened by gear-portal-team 9 months ago - 4 comments

#653 - Gene Mapping System Used in Inner Ear Organoid (Steinhart) Dataset

Issue - State: closed - Opened by gear-portal-team 9 months ago - 4 comments

#652 - UI v2 orthology refactoring

Pull Request - State: closed - Opened by adkinsrs 9 months ago

#652 - UI v2 orthology refactoring

Pull Request - State: closed - Opened by adkinsrs 9 months ago

#651 - Database download for enrichment analysis

Issue - State: closed - Opened by gear-portal-team 9 months ago - 2 comments

#651 - Database download for enrichment analysis

Issue - State: closed - Opened by gear-portal-team 9 months ago - 2 comments

#650 - Backport fixednmf v2 to v1

Pull Request - State: closed - Opened by adkinsrs 9 months ago

#650 - Backport fixednmf v2 to v1

Pull Request - State: closed - Opened by adkinsrs 9 months ago

#649 - Decouple orthology mapping from plotting API calls; Create "orthologs" dropdown

Issue - State: closed - Opened by adkinsrs 9 months ago - 1 comment
Labels: enhancement, code cleanup

#649 - Decouple orthology mapping from plotting API calls; Create "orthologs" dropdown

Issue - State: closed - Opened by adkinsrs 9 months ago - 1 comment
Labels: enhancement, code cleanup

#647 - SC-Workbench - possibility of subclustering

Issue - State: open - Opened by adkinsrs 9 months ago
Labels: enhancement

#647 - SC-Workbench - possibility of subclustering

Issue - State: open - Opened by adkinsrs 9 months ago
Labels: enhancement

#644 - Compare tool - add DESeq significance testing

Issue - State: open - Opened by adkinsrs 9 months ago
Labels: enhancement, user request

#644 - Compare tool - add DESeq significance testing

Issue - State: open - Opened by adkinsrs 9 months ago
Labels: enhancement, user request

#643 - Compare tool - add FDR correction for statistical tests

Issue - State: open - Opened by adkinsrs 9 months ago
Labels: enhancement, user request

#643 - Compare tool - add FDR correction for statistical tests

Issue - State: open - Opened by adkinsrs 9 months ago
Labels: enhancement, user request

#642 - Changing scoring method results in nonsensical values for svgs

Issue - State: open - Opened by JPReceveur 9 months ago - 3 comments
Labels: bug, Low Priority

#642 - Changing scoring method results in nonsensical values for svgs

Issue - State: open - Opened by JPReceveur 9 months ago - 3 comments
Labels: bug, Low Priority

#641 - gene expression search behavior for missing genes

Issue - State: open - Opened by JPReceveur 9 months ago
Labels: bug, Low Priority

#641 - gene expression search behavior for missing genes

Issue - State: open - Opened by JPReceveur 9 months ago
Labels: bug, Low Priority

#640 - Exact match behavior when using multigenes

Issue - State: open - Opened by JPReceveur 9 months ago
Labels: enhancement, Low Priority

#640 - Exact match behavior when using multigenes

Issue - State: open - Opened by JPReceveur 9 months ago
Labels: enhancement, Low Priority

#639 - Replace nice-select2 gene search dropdowns with simple autocomplete

Issue - State: closed - Opened by adkinsrs 10 months ago - 1 comment
Labels: enhancement

#639 - Replace nice-select2 gene search dropdowns with simple autocomplete

Issue - State: closed - Opened by adkinsrs 10 months ago - 1 comment
Labels: enhancement

#638 - Throw warning in dataset explorer when searching with too few characters

Issue - State: open - Opened by JPReceveur 10 months ago
Labels: enhancement, Low Priority

#638 - Throw warning in dataset explorer when searching with too few characters

Issue - State: open - Opened by JPReceveur 10 months ago
Labels: enhancement, Low Priority

#637 - Write test suites

Issue - State: open - Opened by adkinsrs 11 months ago
Labels: documentation, code cleanup, needs testing

#636 - Gene Collection Manager - Improve Partial Name matching

Issue - State: open - Opened by adkinsrs 11 months ago
Labels: bug, enhancement

#636 - Gene Collection Manager - Improve Partial Name matching

Issue - State: open - Opened by adkinsrs 11 months ago
Labels: bug, enhancement

#635 - Refactor of Single Gene Curator

Issue - State: closed - Opened by DanLesperance 11 months ago - 4 comments
Labels: bug

#635 - Refactor of Single Gene Curator

Issue - State: closed - Opened by DanLesperance 11 months ago - 4 comments
Labels: bug

#634 - Visualizing marker genes return an error

Issue - State: closed - Opened by beamilon 11 months ago - 3 comments

#634 - Visualizing marker genes return an error

Issue - State: closed - Opened by beamilon 11 months ago - 3 comments

#633 - Some uploads failing due to character set

Issue - State: closed - Opened by jorvis 11 months ago - 3 comments
Labels: bug

#633 - Some uploads failing due to character set

Issue - State: closed - Opened by jorvis 11 months ago - 3 comments
Labels: bug

#632 - Setup devel server as a Github Actions self-hosted runner

Issue - State: closed - Opened by adkinsrs 11 months ago - 1 comment
Labels: enhancement, needs testing

#632 - Setup devel server as a Github Actions self-hosted runner

Issue - State: closed - Opened by adkinsrs 11 months ago - 1 comment
Labels: enhancement, needs testing

#630 - Adding the ability to make two equal sized datasets in one row of a profile

Issue - State: open - Opened by JPReceveur 12 months ago - 1 comment
Labels: enhancement

#630 - Adding the ability to make two equal sized datasets in one row of a profile

Issue - State: open - Opened by JPReceveur 12 months ago - 1 comment
Labels: enhancement

#629 - Test Plan

Issue - State: open - Opened by RLC-DCPPC 12 months ago - 3 comments

#629 - Test Plan

Issue - State: open - Opened by RLC-DCPPC 12 months ago - 3 comments

#628 - H5AD file read error shows up as "Resources are busy ..."

Issue - State: open - Opened by jorvis 12 months ago - 2 comments
Labels: bug

#628 - H5AD file read error shows up as "Resources are busy ..."

Issue - State: open - Opened by jorvis 12 months ago - 2 comments
Labels: bug

#627 - Issue with dataset

Issue - State: open - Opened by gear-portal-team 12 months ago - 2 comments

#627 - Issue with dataset

Issue - State: open - Opened by gear-portal-team 12 months ago - 2 comments

#624 - URGENT: gEAR website not loading at all

Issue - State: closed - Opened by kmgwilliam about 1 year ago - 1 comment

#624 - URGENT: gEAR website not loading at all

Issue - State: closed - Opened by kmgwilliam about 1 year ago - 1 comment