IEDB/PEPMatch issues and pull requests

#17 - Batch kmer generation

Issue - State: closed - Opened by InfiniGeorges 3 months ago - 2 comments

#16 - include `swissprot` column in metadata for protein review status

Issue - State: open - Opened by danielmarrama 4 months ago - 1 comment
Labels: enhancement

#15 - make numeric columns into `str` values to avoid float conversion

Issue - State: open - Opened by danielmarrama 4 months ago
Labels: bug

#14 - Pandas data type exception: trying to get an integer from ''

Issue - State: open - Opened by patrick-willems 5 months ago - 1 comment

#13 - Add terminal progress output for best match

Issue - State: open - Opened by danielmarrama 6 months ago
Labels: enhancement

#12 - pandas --> polars switch

Issue - State: open - Opened by danielmarrama 7 months ago
Labels: enhancement

#11 - Resolves Issue #7

Pull Request - State: closed - Opened by gould-arthur 7 months ago - 2 comments

#10 - allow for addition of SQLite table if `.db` file already exists

Issue - State: open - Opened by danielmarrama 7 months ago
Labels: bug, good first issue

#9 - TypeError: object cannot be converted to an IntegerDtype for converting `int_cols`

Issue - State: closed - Opened by danielmarrama 7 months ago - 1 comment
Labels: bug

#8 - allow for FASTA queries to retain the headers for the final output

Issue - State: open - Opened by danielmarrama 7 months ago
Labels: enhancement, good first issue

#7 - `-o` flag should also allow for path to location for file writing

Issue - State: closed - Opened by danielmarrama 7 months ago
Labels: enhancement, good first issue

#6 - Fail to import hamming

Issue - State: closed - Opened by Hayfabm 8 months ago - 5 comments

#5 - fix metadata retrieval when not using UniProt proteomes

Issue - State: closed - Opened by danielmarrama over 1 year ago

#4 - Species Questions About reference proteome

Issue - State: closed - Opened by peomelo over 1 year ago - 1 comment

#3 - rows of peptides that did not match get dropped after best_match=True

Issue - State: closed - Opened by danielmarrama over 1 year ago - 1 comment
Labels: bug

#2 - results are different when proteome already preprocessed