Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / I2PC/scipion-em-xmipptomo issues and pull requests

#201 - Tests

Pull Request - State: open - Opened by MartinSalinas98 3 months ago - 2 comments
Labels: bug, enhancement

#200 - Patch version bump-up

Pull Request - State: closed - Opened by oierlauzi 5 months ago - 1 comment

#199 - Update protocol_segment_morphology.py

Pull Request - State: closed - Opened by Vilax 5 months ago - 1 comment

#198 - Update protocol_segment_morphology.py

Pull Request - State: closed - Opened by Vilax 5 months ago - 1 comment

#197 - Fixed CTF formula

Pull Request - State: closed - Opened by MartinSalinas98 5 months ago - 2 comments
Labels: bug

#196 - Fixed particle duplication bug

Pull Request - State: closed - Opened by MartinSalinas98 5 months ago - 1 comment
Labels: bug

#195 - Release 3.24.06

Pull Request - State: closed - Opened by albertmena 6 months ago - 1 comment
Labels: Release

#194 - Release 3.24.06

Pull Request - State: closed - Opened by albertmena 6 months ago - 1 comment
Labels: Release

#193 - fixing bugs

Pull Request - State: closed - Opened by Vilax 6 months ago - 1 comment

#192 - fixing bugs

Pull Request - State: closed - Opened by Vilax 6 months ago - 1 comment

#191 - fixing cltomo test

Pull Request - State: closed - Opened by Vilax 6 months ago - 1 comment

#190 - adding thresdholding segmentation protocols

Pull Request - State: closed - Opened by Vilax 6 months ago - 1 comment

#189 - monotmo test fixed

Pull Request - State: open - Opened by Vilax 6 months ago - 1 comment

#188 - monotomo test fixed

Pull Request - State: closed - Opened by Vilax 6 months ago - 2 comments

#187 - Avoid send statistics

Pull Request - State: closed - Opened by albertmena 6 months ago - 1 comment

#186 - removing tilt particles

Pull Request - State: closed - Opened by Vilax 6 months ago - 1 comment

#185 - dose filter, removing extract stacks: fixed for merging base

Pull Request - State: closed - Opened by Vilax 6 months ago - 3 comments

#184 - Adding protocols to legacy

Pull Request - State: closed - Opened by Vilax 6 months ago - 1 comment

#183 - merging project top and project subtomograms into project subtomograms

Pull Request - State: closed - Opened by Vilax 6 months ago - 4 comments

#182 - Protocol for applying mask to a tomogram?

Issue - State: closed - Opened by pconesa 9 months ago - 1 comment

#181 - improve extract subtomos readability

Pull Request - State: closed - Opened by fede-pe 9 months ago - 1 comment

#180 - Updated deprecated function call

Pull Request - State: closed - Opened by MartinSalinas98 9 months ago - 1 comment
Labels: enhancement

#179 - Automatic tests inside actions

Pull Request - State: closed - Opened by MartinSalinas98 10 months ago - 1 comment
Labels: enhancement

#178 - plt.show() doesn't accept args

Pull Request - State: closed - Opened by azazellochg 10 months ago - 3 comments
Labels: bug

#177 - Update requirements.txt with xmippBase

Pull Request - State: closed - Opened by albertmena 10 months ago - 1 comment

#176 - Xmipp base

Pull Request - State: open - Opened by Vilax 10 months ago - 3 comments

#175 - Fi dmd update model

Pull Request - State: closed - Opened by fede-pe 12 months ago - 1 comment

#174 - Release 3.23.11 to devel

Pull Request - State: closed - Opened by albertmena about 1 year ago - 1 comment
Labels: Release

#173 - Release 3.23.11 (Nereus)

Pull Request - State: closed - Opened by oierlauzi about 1 year ago - 1 comment
Labels: Release

#172 - allowing odd-even associated to the full tomogram

Pull Request - State: closed - Opened by Vilax about 1 year ago - 1 comment

#171 - score transform should be revisited

Issue - State: open - Opened by Vilax about 1 year ago

#170 - updating CLtomo

Pull Request - State: closed - Opened by Vilax about 1 year ago - 1 comment

#169 - CLtomo is not working with subtomograms

Issue - State: closed - Opened by Vilax about 1 year ago

#168 - test monotomo fixed

Pull Request - State: closed - Opened by Vilax about 1 year ago - 1 comment

#167 - Fixed Score coordinates and phantom subtomo tests

Pull Request - State: closed - Opened by DavidHerreros about 1 year ago - 8 comments

#166 - Fi refactor test

Pull Request - State: closed - Opened by fede-pe about 1 year ago - 1 comment

#165 - Reorganize the utils funcions and converts

Issue - State: closed - Opened by Vilax about 1 year ago - 1 comment

#164 - protocol_subtomo_subtraction: improved implementation with MPI and md convert

Pull Request - State: closed - Opened by EstrellaFG about 1 year ago - 1 comment

#163 - Fi new subtomo extractor

Pull Request - State: closed - Opened by fede-pe about 1 year ago - 1 comment

#162 - Project subtomograms: Added angles from Tilt Series

Pull Request - State: closed - Opened by MartinSalinas98 about 1 year ago - 2 comments
Labels: enhancement

#161 - dose validation fixed

Pull Request - State: closed - Opened by Vilax about 1 year ago - 1 comment
Labels: bug

#160 - Actions: Show compile log if compilation fails

Pull Request - State: closed - Opened by MartinSalinas98 about 1 year ago - 1 comment
Labels: enhancement

#159 - Fixed calculateRotationAngleAndShiftsFromTM

Pull Request - State: closed - Opened by MartinSalinas98 about 1 year ago - 1 comment
Labels: bug

#158 - Default invert contrast in xmipp extract subtomos

Issue - State: closed - Opened by fede-pe about 1 year ago - 1 comment

#157 - Fix bugs & code smells

Pull Request - State: closed - Opened by MartinSalinas98 about 1 year ago - 1 comment
Labels: bug

#156 - Recover deleted methods

Pull Request - State: closed - Opened by fede-pe about 1 year ago - 1 comment

#155 - Improved CUDA installation command

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago - 1 comment
Labels: enhancement

#154 - Added automatic SonarCloud Scan

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago - 1 comment
Labels: enhancement

#153 - keeping directions in extract subtomos

Pull Request - State: closed - Opened by Vilax over 1 year ago - 2 comments

#152 - dose fixes

Pull Request - State: closed - Opened by Vilax over 1 year ago

#151 - particle stack

Pull Request - State: closed - Opened by Vilax over 1 year ago

#150 - extract particle tilt series

Pull Request - State: closed - Opened by Vilax over 1 year ago

#149 - Merge release Morpheus in devel

Pull Request - State: closed - Opened by EstrellaFG over 1 year ago

#148 - Release 3.23.07

Pull Request - State: closed - Opened by albertmena over 1 year ago
Labels: Release

#147 - Improved build action

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago - 2 comments
Labels: enhancement

#146 - Parallelized protocol project subtomograms

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago
Labels: enhancement

#145 - Fi feature detect landmarks

Pull Request - State: closed - Opened by fede-pe over 1 year ago - 2 comments

#144 - PHC and deep misalignment detection (laFedeTesis vol. I)

Pull Request - State: closed - Opened by fede-pe over 1 year ago

#143 - Ignore alignments in projection

Pull Request - State: closed - Opened by pconesa over 1 year ago - 1 comment

#142 - Added build plugin action

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago
Labels: enhancement

#141 - MS: Subtomogram projection protocol

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago
Labels: enhancement

#139 - monotomo fixes

Pull Request - State: closed - Opened by Vilax over 1 year ago - 4 comments

#138 - Master

Pull Request - State: closed - Opened by pconesa over 1 year ago

#137 - - Map back fix: works with "other tomograms"

Pull Request - State: closed - Opened by pconesa over 1 year ago

#136 - - Map back fix: works with 3d classes

Pull Request - State: closed - Opened by pconesa over 1 year ago

#134 - splitTS: fixing file path to run the test

Pull Request - State: closed - Opened by albertmena over 1 year ago - 1 comment

#133 - Projection

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago

#132 - update devel with Master

Pull Request - State: closed - Opened by pconesa over 1 year ago

#131 - Projection

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago

#130 - Fix tests

Pull Request - State: closed - Opened by pconesa over 1 year ago

#129 - Update requirements.txt

Pull Request - State: closed - Opened by albertmena over 1 year ago - 6 comments

#128 - Improve mapback

Pull Request - State: closed - Opened by pconesa over 1 year ago

#127 - Adding new method confidence map

Pull Request - State: closed - Opened by Vilax over 1 year ago - 1 comment

#124 - - Mapback scales any reference to match the tomogram sampling.

Pull Request - State: closed - Opened by pconesa over 1 year ago

#122 - Added protocol for obtaining sobtomogram projections

Pull Request - State: closed - Opened by MartinSalinas98 over 1 year ago

#121 - merging with Master

Pull Request - State: closed - Opened by Vilax over 1 year ago

#120 - FlexAlign requires a validation, CPU+local alignment are not compatibles

Issue - State: closed - Opened by Vilax over 1 year ago - 1 comment

#119 - - Subtomo projector compatible with hdf stacks. Test fixed. Projecti…

Pull Request - State: closed - Opened by pconesa over 1 year ago

#118 - Devel to Master

Pull Request - State: closed - Opened by albertmena over 1 year ago
Labels: Release

#117 - Project with alignement

Pull Request - State: closed - Opened by pconesa over 1 year ago

#116 - Project with alignement

Pull Request - State: closed - Opened by pconesa over 1 year ago

#115 - - Fix score transformations: avoid scores over 180.

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#114 - No protocols

Issue - State: closed - Opened by DcShepherd almost 2 years ago - 3 comments
Labels: help wanted

#113 - Master to devel

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#112 - phantom subtomos: allow a fixed seed for test.

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#111 - Master to devel

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#110 - Fi test split ts

Pull Request - State: closed - Opened by fede-pe almost 2 years ago

#109 - new tests for fit vesicles and CCtoROIs

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 2 comments

#108 - test_protocol_phantom_subtomo not passing

Issue - State: open - Opened by EstrellaFG almost 2 years ago

#107 - XmippTomoScoreCoordinates test not passing

Issue - State: open - Opened by fede-pe almost 2 years ago - 1 comment

#106 - List of tests to be done

Issue - State: open - Opened by Vilax almost 2 years ago - 1 comment
Labels: enhancement, In progress

#105 - release devel

Pull Request - State: closed - Opened by pconesa almost 2 years ago

#104 - fixing subtomogram phantoms protocol

Pull Request - State: closed - Opened by fonsecareyna82 almost 2 years ago - 5 comments

#103 - Replacing XmippProtFlexAlign name.

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 2 comments

#102 - Tomo reconstruction

Pull Request - State: closed - Opened by Vilax almost 2 years ago - 1 comment

#101 - adding Dose filter to xmipptomo

Pull Request - State: closed - Opened by Vilax almost 2 years ago - 1 comment