I2PC/scipion-em-xmipp issues and pull requests

#668 - protocol_consensus_local_ctf: save defocus in proper fields

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 2 comments

#667 - volume subtraction: fix :mrc in first input

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment

#666 - Renaming enviroment deepHand with pyTorch

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment

#665 - Addding a validate in 3dmask

Pull Request - State: closed - Opened by Vilax almost 2 years ago - 1 comment

#664 - monores_viewer: fix histogram

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment

#663 - Better instantiation of Scipion subclasses

Pull Request - State: closed - Opened by DavidHerreros almost 2 years ago - 1 comment

#662 - Create buildPlugin.yml

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment

#661 - Monores: resolution histogram is not displayed correctly

Issue - State: closed - Opened by EstrellaFG almost 2 years ago
Labels: bug

#660 - requirements and version

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment

#659 - Updated requirement. HotFix

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment
Labels: release

#658 - Update requirements.txt

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment

#657 - Update requirements.txt

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 2 comments

#656 - Movie gain protocol: bug fix a print format

Pull Request - State: closed - Opened by danielmarchan3 almost 2 years ago - 1 comment
Labels: bug

#655 - protocol_subtract_projection: parallelization with MPI

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment

#654 - Xmipp create 3d mask

Issue - State: closed - Opened by pconesa almost 2 years ago - 1 comment

#653 - Align volume and particles does not work when different handeness is provided

Issue - State: open - Opened by oierlauzi almost 2 years ago - 1 comment
Labels: enhancement

#652 - Fixed error in protocol Align Volume and Particles

Pull Request - State: closed - Opened by oierlauzi almost 2 years ago - 1 comment

#651 - Align volume and particles protocol fails when using a mask file

Issue - State: closed - Opened by oierlauzi almost 2 years ago
Labels: bug

#650 - Defocus group protocol fails

Issue - State: closed - Opened by oierlauzi almost 2 years ago - 3 comments
Labels: bug

#649 - Installation DLTK

Pull Request - State: closed - Opened by oierlauzi almost 2 years ago

#648 - test continuousFlex fixed

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 2 comments

#647 - particle_pick_automatic: Improved conditions

Pull Request - State: closed - Opened by MartinSalinas98 almost 2 years ago - 2 comments

#646 - protocol_remove_duplicates: failling wizard

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment

#645 - CTF consensus: add 4 threads by default

Pull Request - State: closed - Opened by danielmarchan3 almost 2 years ago - 1 comment

#644 - protocol_convert_a_pdb: dont allow set size if template volume

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment

#643 - Fixed import error

Pull Request - State: closed - Opened by MartinSalinas98 almost 2 years ago - 1 comment

#642 - viewer_projmatch: Import missing in viewer

Issue - State: closed - Opened by MartinSalinas98 almost 2 years ago
Labels: bug

#641 - Protocol movie gain fails when the gain file does not exists

Issue - State: closed - Opened by danielmarchan3 almost 2 years ago - 1 comment
Labels: bug

#640 - Fixed typo

Pull Request - State: closed - Opened by MartinSalinas98 almost 2 years ago

#639 - New Validation Algorithm: Detect misalignment with resolution

Pull Request - State: closed - Opened by Vilax almost 2 years ago - 2 comments

#638 - Movie Gain: changed _stepsCheckSecs and fixed self.inputMovies calling

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment
Labels: bug

#637 - deepLearningToolKit installation enviroments

Issue - State: closed - Opened by albertmena almost 2 years ago - 5 comments
Labels: enhancement

#636 - Deprecating protocols

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 3 comments

#635 - protocol_remove_duplicates: failling wizard

Issue - State: closed - Opened by EstrellaFG almost 2 years ago
Labels: bug

#634 - protocol xmipp3-reconstruct fourier doesn't seem to work properly

Issue - State: closed - Opened by mmmtnez almost 2 years ago - 2 comments

#633 - protocol_convert_a_pdb: dont allow set size if template volume

Issue - State: closed - Opened by EstrellaFG almost 2 years ago
Labels: bug

#632 - protocol_subtract_projection (to master): change pad validation error for warning

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment
Labels: release

#631 - protocol_subtract_projection: change pad validation error for warning

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment
Labels: release

#630 - protocol_subtract_projection: change pad validation error for warning

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 2 comments

#629 - Center particles: streaming bug when definining the outputs

Pull Request - State: closed - Opened by danielmarchan3 almost 2 years ago - 1 comment
Labels: bug

#628 - Picking consensus: define correctly the possibleOutputs

Pull Request - State: closed - Opened by danielmarchan3 almost 2 years ago - 1 comment
Labels: bug

#627 - picking consensus wrong possible outputs

Issue - State: closed - Opened by pconesa almost 2 years ago - 1 comment
Labels: bug

#626 - protocol_volume_adjust_sub: fix with :mrc

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment

#625 - Deep micrograph cleaner: fix two bugs that occured during streaming implementation

Pull Request - State: closed - Opened by danielmarchan3 almost 2 years ago - 1 comment
Labels: bug

#624 - Tilt analysis protocol: bug corrected

Pull Request - State: closed - Opened by danielmarchan3 almost 2 years ago - 1 comment
Labels: bug

#623 - Release 3.23.03 to devel

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 4 comments
Labels: release

#622 - updating the fso for its release

Pull Request - State: closed - Opened by Vilax almost 2 years ago - 1 comment

#621 - FSC visualization fails if there is not cutting point

Issue - State: closed - Opened by Vilax almost 2 years ago - 1 comment

#620 - Release 3.23.03

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment
Labels: release

#619 - pyworkflow requirements updated

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment

#618 - subtract_projection & volume_consensus: validate same sampling rate with tolerance in third decimal

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment

#617 - HotFix to devel Align volume and particles works in the absence of tomo plugin

Pull Request - State: closed - Opened by albertmena almost 2 years ago - 1 comment

#616 - - Align volume and particles works in the absence of tomo plugin.

Pull Request - State: closed - Opened by pconesa almost 2 years ago - 2 comments

#615 - Fixes for #584 (Convert PDB protocol)

Pull Request - State: closed - Opened by DavidHerreros almost 2 years ago - 1 comment

#614 - deprecate protocol_deep _align + reconstruct_heterogeneous + related code

Pull Request - State: closed - Opened by EstrellaFG almost 2 years ago - 1 comment

#613 - align volume and particles tomo

Pull Request - State: closed - Opened by albertmena about 2 years ago - 1 comment

#612 - Align volume and particles adapted to tomography.

Pull Request - State: closed - Opened by pconesa about 2 years ago - 1 comment

#611 - protocol_projection_subtraction: user experience improvements

Pull Request - State: closed - Opened by EstrellaFG about 2 years ago - 2 comments

#610 - Movie Gain: fix no referenced os import

Pull Request - State: closed - Opened by danielmarchan3 about 2 years ago - 1 comment
Labels: bug

#609 - Updating the protocol status (BETA, NEW...)

Pull Request - State: closed - Opened by albertmena about 2 years ago - 3 comments

#608 - comment out deprecated viewer_mltomo

Pull Request - State: closed - Opened by jamesmkrieger about 2 years ago - 2 comments

#607 - viewer_mltomo is deleted but is still in init

Issue - State: closed - Opened by MohamadHarastani about 2 years ago

#606 - monoRes gives vol0Fn missing

Issue - State: closed - Opened by teret33 about 2 years ago - 4 comments
Labels: needs confirmation

#605 - Fixed a documentation issue

Pull Request - State: closed - Opened by MohamadHarastani about 2 years ago - 6 comments

#604 - Simulate CTF A° to nm inversion

Issue - State: closed - Opened by VictorHanss about 2 years ago

#598 - Create protocol for xmipp_angular_rotate program

Issue - State: open - Opened by albertmena about 2 years ago - 2 comments
Labels: enhancement

#597 - Xmipp_day: protocol_align_volume_and_particles: add alingment validation

Pull Request - State: closed - Opened by EstrellaFG about 2 years ago - 1 comment

#591 - Release-3.22.11 into devel

Pull Request - State: closed - Opened by albertmena over 2 years ago - 1 comment
Labels: release

#590 - Release 3.22.11

Pull Request - State: closed - Opened by albertmena over 2 years ago - 1 comment
Labels: release

#586 - Fix version number

Pull Request - State: closed - Opened by pconesa over 2 years ago - 1 comment
Labels: release

#584 - Tolerate spaces in at least XmippProtConvertPdb

Issue - State: closed - Opened by pconesa over 2 years ago - 3 comments
Labels: bug

#582 - enable crop/resize particles to use a 2d mask

Issue - State: closed - Opened by pconesa over 2 years ago
Labels: enhancement

#579 - Bug: Remove empty classes

Issue - State: closed - Opened by danielmarchan3 over 2 years ago - 1 comment
Labels: bug

#575 - xmipp3 - helical symmetry

Issue - State: closed - Opened by DmitrySemchonok over 2 years ago - 2 comments
Labels: enhancement

#574 - Bug center particles protocol

Issue - State: closed - Opened by rsanchezgarc over 2 years ago - 1 comment
Labels: bug

#573 - Volume crop resize and sampling rate in the mrc headers

Issue - State: closed - Opened by pconesa over 2 years ago - 5 comments
Labels: bug, needs confirmation

#572 - Updating scikit-learn

Pull Request - State: closed - Opened by albertmena over 2 years ago - 6 comments

#556 - fix scipy

Pull Request - State: closed - Opened by pconesa over 2 years ago - 1 comment

#554 - scikit-learn update

Issue - State: closed - Opened by azazellochg over 2 years ago - 9 comments
Labels: enhancement

#550 - Release 3.22.07 to devel

Pull Request - State: closed - Opened by albertmena over 2 years ago - 1 comment
Labels: release

#548 - Release 3.22.07

Pull Request - State: closed - Opened by albertmena over 2 years ago - 1 comment
Labels: release

#547 - protocol_split_volume_hierarchical_cluster error

Issue - State: closed - Opened by gemapatricia over 2 years ago - 2 comments
Labels: bug

#542 - protocol_deep_align not reachable in Scipion

Issue - State: closed - Opened by EstrellaFG over 2 years ago - 3 comments
Labels: help wanted

#537 - readSetOfParticles with "extralabels" arg is very slow

Issue - State: closed - Opened by EstrellaFG over 2 years ago - 2 comments
Labels: enhancement, help wanted

#529 - TestXmippCompareReprojections: remove warnings

Issue - State: open - Opened by EstrellaFG over 2 years ago
Labels: enhancement

#526 - DeepEMhancer: enhancing the tests

Pull Request - State: closed - Opened by Vilax over 2 years ago - 1 comment

#523 - Move to deprecated folder protocols without maintenance and use

Issue - State: closed - Opened by albertmena over 2 years ago - 1 comment
Labels: In progress

#522 - Tests pending to create

Issue - State: open - Opened by albertmena over 2 years ago - 2 comments
Labels: enhancement

#518 - protocol_ctf_consensus: does not work properly with multiple threads.

Issue - State: closed - Opened by albertmena over 2 years ago
Labels: bug

#509 - Release 3.22.04 to devel

Pull Request - State: closed - Opened by albertmena almost 3 years ago - 1 comment
Labels: release

#508 - Release 3.22.04

Pull Request - State: closed - Opened by albertmena almost 3 years ago - 2 comments
Labels: release

#502 - Trigger data protocol: new function to stop the stream

Pull Request - State: closed - Opened by danielmarchan3 almost 3 years ago - 1 comment

#488 - Ctf consensus: performance improvement. Reduce steps number

Issue - State: closed - Opened by albertmena about 3 years ago
Labels: enhancement

#483 - Deep consensus: multiple fixes in batch processing, trainging and streaming mode

Pull Request - State: closed - Opened by danielmarchan3 about 3 years ago - 2 comments

#479 - Release 22.01

Pull Request - State: closed - Opened by albertmena about 3 years ago - 2 comments
Labels: release

#451 - xmipp auto picking

Issue - State: closed - Opened by pconesa over 3 years ago - 1 comment
Labels: needs confirmation

#446 - Release 21.09

Pull Request - State: closed - Opened by DStrelak over 3 years ago - 1 comment
Labels: release

#426 - deep consensus picking failng

Issue - State: closed - Opened by pconesa over 3 years ago - 2 comments
Labels: needs confirmation

#417 - Release 21.06

Pull Request - State: closed - Opened by dmaluenda over 3 years ago - 1 comment
Labels: release

#340 - use an "indirect" pointer to mics in ctf set. This should fix pointer…

Pull Request - State: closed - Opened by pconesa about 4 years ago - 2 comments

GitHub / I2PC/scipion-em-xmipp issues and pull requests