Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / I2PC/scipion-em-xmipp issues and pull requests

#888 - fixing header in MonoRes

Pull Request - State: open - Opened by Vilax 20 days ago - 1 comment

#887 - Fix FSCQ test

Pull Request - State: open - Opened by DavidHerreros 20 days ago - 2 comments

#886 - Movie Alignment Consensus (MvAC) stalls on irregular input sets

Issue - State: open - Opened by Ratolon 2 months ago
Labels: bug

#885 - Movie Dose Analysis fails when movie set has irregular number of frames

Issue - State: open - Opened by Ratolon 2 months ago - 1 comment
Labels: bug

#884 - Release 3.24.12.3

Pull Request - State: open - Opened by albertmena 26 days ago - 1 comment
Labels: release

#883 - init generator for pre and post ctf noise

Pull Request - State: open - Opened by jamesmkrieger 29 days ago - 2 comments

#882 - Simulating CTF with pre-CTF noise doesn't work

Issue - State: open - Opened by jamesmkrieger about 1 month ago - 1 comment

#881 - fix simulate ctf pre-CTF noise np.numpy

Pull Request - State: closed - Opened by jamesmkrieger about 1 month ago - 1 comment

#880 - devel name

Pull Request - State: closed - Opened by albertmena about 1 month ago - 1 comment

#879 - Master to devel

Pull Request - State: closed - Opened by albertmena about 1 month ago - 1 comment
Labels: release

#878 - version name in setup

Pull Request - State: closed - Opened by albertmena about 1 month ago - 1 comment
Labels: release

#877 - Protocol dose analysis: make the estimation tolerable to corrupted movies files

Pull Request - State: closed - Opened by danielmarchan3 about 1 month ago - 1 comment
Labels: enhancement

#876 - Max shift protocol: tolerate movies without micrographs associated

Pull Request - State: closed - Opened by danielmarchan3 about 1 month ago - 1 comment
Labels: enhancement

#875 - Fixing viewer __init__.py file

Pull Request - State: closed - Opened by oierlauzi about 1 month ago - 1 comment

#874 - Release 3.24.12a

Pull Request - State: closed - Opened by albertmena about 2 months ago - 1 comment
Labels: release

#873 - Agm fake m

Pull Request - State: closed - Opened by albertmena about 2 months ago - 1 comment

#872 - Release 3.24.12.2

Pull Request - State: closed - Opened by albertmena about 2 months ago - 1 comment

#871 - Update release.yml

Pull Request - State: closed - Opened by albertmena about 2 months ago - 1 comment

#870 - Update release.yml

Pull Request - State: closed - Opened by albertmena about 2 months ago - 1 comment

#869 - Release 3.24.12.2

Pull Request - State: closed - Opened by albertmena 2 months ago - 1 comment
Labels: release

#868 - Release 3.24.12.1

Pull Request - State: closed - Opened by albertmena 2 months ago - 1 comment
Labels: release

#867 - Release 3.24.12

Pull Request - State: closed - Opened by albertmena 2 months ago - 1 comment
Labels: release

#866 - managin scipionApp

Pull Request - State: closed - Opened by albertmena 2 months ago - 1 comment

#865 - Update release.yml

Pull Request - State: closed - Opened by albertmena 2 months ago - 1 comment

#864 - Fi flag proy substraction

Pull Request - State: closed - Opened by fede-pe 2 months ago - 1 comment

#862 - Updating dev versions after release

Pull Request - State: closed - Opened by albertmena 2 months ago - 1 comment

#861 - Release 3.24.12_failed

Pull Request - State: closed - Opened by albertmena 2 months ago - 1 comment
Labels: release

#848 - Fix structure map viewer

Pull Request - State: open - Opened by DavidHerreros 2 months ago - 1 comment

#839 - The dataset of the test does not update from nolan

Issue - State: open - Opened by albertmena 3 months ago
Labels: needs confirmation

#838 - New protocol: Clustering 2D Classes

Pull Request - State: open - Opened by danielmarchan3 3 months ago - 1 comment
Labels: enhancement

#837 - Deep center is a new protocol

Pull Request - State: open - Opened by cossorzano 3 months ago - 1 comment

#836 - Co fix2

Pull Request - State: open - Opened by cossorzano 3 months ago - 1 comment

#835 - Adding protocols to protocol.conf

Pull Request - State: closed - Opened by albertmena 3 months ago - 1 comment

#834 - Fix compare reprojections test

Pull Request - State: open - Opened by danielmarchan3 3 months ago - 1 comment

#833 - Remove unnecessary parallelization: MaxShift and CTF Consensus protocols

Pull Request - State: open - Opened by danielmarchan3 3 months ago - 1 comment
Labels: enhancement

#832 - CUDA assign continuous 2 in highres

Issue - State: open - Opened by cossorzano 3 months ago - 1 comment
Labels: enhancement

#831 - deepCenter a beta

Issue - State: closed - Opened by cossorzano 3 months ago - 1 comment

#830 - Use GPU version of angular assignment in HighRes

Issue - State: closed - Opened by Ratolon 3 months ago - 1 comment
Labels: enhancement

#828 - Generating toml file

Pull Request - State: open - Opened by albertmena 3 months ago - 1 comment

#827 - Typos

Pull Request - State: closed - Opened by MartinSalinas98 3 months ago - 1 comment
Labels: documentation

#826 - pip will deprecate setup.py

Issue - State: open - Opened by albertmena 3 months ago - 1 comment
Labels: enhancement

#825 - reconstruct_highres: Fix; set of volume as input

Pull Request - State: closed - Opened by cossorzano 3 months ago - 1 comment

#824 - New protocol: micrographs defocus sampler

Pull Request - State: closed - Opened by danielmarchan3 3 months ago - 1 comment
Labels: enhancement

#823 - Fi lig fit

Pull Request - State: open - Opened by fede-pe 3 months ago - 1 comment

#822 - Bug fix when testing multiple downsampling factors

Pull Request - State: closed - Opened by cossorzano 4 months ago - 1 comment

#821 - JMK fix highres: add unassigned vars fnVol1 fnVol2 to set loop

Pull Request - State: closed - Opened by jamesmkrieger 4 months ago - 2 comments

#820 - Tilt analysis protocol: small fix deepcopy

Pull Request - State: closed - Opened by danielmarchan3 4 months ago - 1 comment
Labels: bug

#819 - Update build.yml

Pull Request - State: closed - Opened by albertmena 4 months ago - 1 comment

#818 - Update build.yml

Pull Request - State: closed - Opened by albertmena 4 months ago - 1 comment

#817 - Refactor protocols: Dose Analysis, Tilt Analysis, CTF consensus, PCA 2D streaming

Pull Request - State: closed - Opened by danielmarchan3 4 months ago - 2 comments
Labels: enhancement

#816 - Co small fixes

Pull Request - State: closed - Opened by cossorzano 4 months ago - 1 comment

#815 - Update build.yml

Pull Request - State: closed - Opened by albertmena 4 months ago - 1 comment

#814 - reconstruct highres fails with input SetOfVolumes

Issue - State: closed - Opened by jamesmkrieger 4 months ago
Labels: bug

#813 - preprocess_micrograph: _insertRunJobStep does not exist on protocol.py

Issue - State: closed - Opened by albertmena 4 months ago - 2 comments
Labels: bug

#812 - Do not install dependencies in conda by default

Pull Request - State: closed - Opened by albertmena 4 months ago - 4 comments
Labels: bug

#811 - hotfix

Pull Request - State: closed - Opened by fede-pe 5 months ago - 1 comment
Labels: bug

#810 - Fi create gallery update

Pull Request - State: closed - Opened by fede-pe 5 months ago - 1 comment

#809 - Action testing

Pull Request - State: open - Opened by oierlauzi 5 months ago - 1 comment

#808 - Improve build action

Pull Request - State: closed - Opened by MartinSalinas98 5 months ago - 1 comment
Labels: enhancement

#807 - Bug fix in the validate function

Pull Request - State: closed - Opened by cossorzano 6 months ago - 2 comments

#806 - Locally adjust Particle's CTF according to the micrograph's tilt angle

Pull Request - State: closed - Opened by oierlauzi 6 months ago - 3 comments

#805 - Xmipp now can read mmcif

Pull Request - State: closed - Opened by cossorzano 7 months ago - 1 comment

#804 - fixes in lig sub

Pull Request - State: closed - Opened by fede-pe 7 months ago - 1 comment

#803 - Trigger data protocol: fix the way we split the output

Pull Request - State: closed - Opened by danielmarchan3 7 months ago - 1 comment
Labels: bug

#802 - deprecated np aliases

Issue - State: closed - Opened by azazellochg 7 months ago - 1 comment

#801 - Bump scikit-learn from 0.22 to 1.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 3 comments
Labels: dependencies

#800 - Release 3.24.06

Pull Request - State: closed - Opened by albertmena 8 months ago - 1 comment
Labels: release

#799 - Update CHANGES.md

Pull Request - State: closed - Opened by albertmena 8 months ago - 1 comment

#798 - Update CHANGES.md

Pull Request - State: closed - Opened by albertmena 8 months ago - 1 comment

#797 - Release 3.24.06

Pull Request - State: closed - Opened by albertmena 8 months ago - 1 comment
Labels: release

#796 - New protocol: PCA classification (streaming and static version)

Pull Request - State: closed - Opened by danielmarchan3 9 months ago - 1 comment

#795 - Updating status for each protocol

Pull Request - State: closed - Opened by albertmena 9 months ago - 1 comment

#794 - Update CHANGES.md

Pull Request - State: closed - Opened by albertmena 9 months ago - 1 comment

#793 - Updated scikit-learn version

Pull Request - State: closed - Opened by albertmena 9 months ago - 1 comment

#792 - pca 2dclassification

Pull Request - State: closed - Opened by erneyramirez 9 months ago - 2 comments

#791 - Remove duplicates coordinates protocol: current default values was useless

Pull Request - State: closed - Opened by danielmarchan3 9 months ago - 1 comment
Labels: enhancement

#790 - Test Max Shift: delete deprecated protocol used in the test

Pull Request - State: closed - Opened by danielmarchan3 9 months ago - 1 comment
Labels: bug

#789 - Avoid send statistics

Pull Request - State: closed - Opened by albertmena 9 months ago - 1 comment

#788 - CL2D: ensuring a save classes creating and adding possible output

Pull Request - State: closed - Opened by Vilax 9 months ago - 1 comment

#787 - Compare reprojections protocol: updated

Pull Request - State: closed - Opened by danielmarchan3 9 months ago - 1 comment
Labels: enhancement

#786 - Master to devel

Pull Request - State: closed - Opened by pconesa 9 months ago - 1 comment

#785 - Fix use gpu

Pull Request - State: closed - Opened by pconesa 9 months ago - 1 comment

#784 - DLTK installation bug local variable

Pull Request - State: closed - Opened by albertmena 9 months ago - 1 comment

#783 - Add acquisition info to create gallery protocol

Issue - State: closed - Opened by fede-pe 10 months ago - 2 comments

#782 - Compare and generatere_projections: small changes

Pull Request - State: closed - Opened by cossorzano 10 months ago - 1 comment

#781 - New CMake based installer.

Pull Request - State: closed - Opened by oierlauzi 10 months ago - 1 comment
Labels: enhancement

#780 - add missing space in ctf help

Pull Request - State: closed - Opened by jamesmkrieger 10 months ago - 2 comments

#779 - Local average added

Pull Request - State: closed - Opened by cossorzano 10 months ago - 2 comments

#778 - --force is deprecated

Issue - State: closed - Opened by oierlauzi 10 months ago

#777 - Check if resizing is enabled in Extract Particles protocol

Pull Request - State: closed - Opened by oierlauzi 10 months ago - 1 comment
Labels: bug

#776 - fix convert pdb inputs and validate

Pull Request - State: closed - Opened by jamesmkrieger 11 months ago - 2 comments

#775 - Small fixes different protocols

Pull Request - State: closed - Opened by danielmarchan3 11 months ago - 1 comment
Labels: bug, enhancement

#774 - extract_particles and simulate_ctf: fixes

Pull Request - State: closed - Opened by cossorzano 11 months ago - 2 comments

#773 - create output for res bfac

Pull Request - State: closed - Opened by jamesmkrieger about 1 year ago - 2 comments

#772 - scipion plugin update to 3.23.11 fails

Issue - State: closed - Opened by chewyalvin about 1 year ago - 2 comments
Labels: help wanted, In progress

#771 - New protocol: Movie alignment consensus

Pull Request - State: closed - Opened by danielmarchan3 about 1 year ago - 4 comments
Labels: enhancement

#770 - Fix local resolution to local bfactor

Pull Request - State: closed - Opened by jamesmkrieger about 1 year ago - 1 comment

#769 - Enable reconstructing with halves in the reconstruct fourier protocol

Pull Request - State: closed - Opened by oierlauzi about 1 year ago - 1 comment