HumanBrainProject/neuroglancer-scripts issues and pull requests

#43 - feat: add read/write support for zarr v2/n5

Pull Request - State: open - Opened by xgui3783 3 months ago

#42 - [feature request] add read support for n5/ome-zarr datasource

Issue - State: open - Opened by xgui3783 3 months ago - 5 comments

#41 - Add tests for Python 3.12 and modernize code quality checks

Pull Request - State: closed - Opened by ylep 7 months ago
Labels: enhancement

#40 - Fixes for upstream updates of NumPy and Nibabel

Pull Request - State: closed - Opened by ylep 7 months ago

#39 - compressed_segmentation encoder generates invalid data under NumPy 2.0

Issue - State: closed - Opened by ylep 7 months ago
Labels: bug

#38 - fix: formatted info json

Pull Request - State: closed - Opened by xgui3783 7 months ago - 3 comments

#37 - [feature request] neuroglancer http accessor profiler

Issue - State: open - Opened by xgui3783 about 1 year ago - 2 comments

#36 - [feature request ?] dropping support for py3.5 (ideally also py3.6 and py3.7)

Issue - State: closed - Opened by xgui3783 over 1 year ago - 2 comments

#35 - Feat: adding support for sharded precomputed

Pull Request - State: closed - Opened by xgui3783 over 1 year ago - 4 comments

#34 - Fix Codecov upload

Pull Request - State: closed - Opened by ylep over 1 year ago - 1 comment

#33 - enh: improve read perf of http accessor by using requests.Session

Pull Request - State: closed - Opened by xgui3783 over 1 year ago - 2 comments

#32 - Support for chunking dataset in memory

Issue - State: closed - Opened by PolarBean over 1 year ago - 2 comments
Labels: question

#31 - [bug] RGB nifti encoding standard unclear

Issue - State: open - Opened by xgui3783 almost 2 years ago

#30 - Make support for Python 3.11 official + fix warnings

Pull Request - State: closed - Opened by ylep almost 2 years ago - 4 comments

#29 - feat: add data_type and encoding to volume to pyramid function

Pull Request - State: closed - Opened by xgui3783 almost 2 years ago - 2 comments

#28 - fix nibabel get_data deprecation

Pull Request - State: closed - Opened by xgui3783 almost 2 years ago - 5 comments

#27 - Restrict nibable to compatible versions

Pull Request - State: closed - Opened by blowekamp almost 2 years ago - 3 comments

#26 - Add Gzip compresslevel option to FileAccessor and command line

Pull Request - State: closed - Opened by ylep about 2 years ago - 2 comments
Labels: enhancement

#25 - update github action trigger

Pull Request - State: closed - Opened by xgui3783 about 2 years ago - 4 comments

#24 - Add Gzip compresslevel option to FileAccessor and command line

Pull Request - State: closed - Opened by blowekamp about 2 years ago - 7 comments

#23 - bugfix: erroneous implementation of reading RGB nifti

Pull Request - State: closed - Opened by xgui3783 almost 3 years ago - 5 comments

#22 - RGB nifti does not work with `volume-to-precomputed-pyramid` out of the box

Issue - State: open - Opened by xgui3783 about 3 years ago

#21 - Apache config

Issue - State: closed - Opened by manoaman about 3 years ago - 17 comments
Labels: question

#20 - Separate PIP cache by Python version

Pull Request - State: closed - Opened by ylep about 3 years ago - 1 comment

#19 - Fix GitHub Actions configuration

Pull Request - State: closed - Opened by ylep about 3 years ago - 1 comment

#18 - Not enough memory

Issue - State: closed - Opened by stephen-zhouyang about 3 years ago - 1 comment

#17 - feat: push releases to pypi

Pull Request - State: closed - Opened by xgui3783 over 3 years ago - 1 comment

#16 - chore: migrate ci to github action

Pull Request - State: closed - Opened by xgui3783 over 3 years ago - 4 comments

#15 - feat: support rgb nifti

Pull Request - State: closed - Opened by xgui3783 over 3 years ago

#14 - feat: support lzw compression tiffs

Pull Request - State: closed - Opened by xgui3783 over 3 years ago

#13 - [feature request] support RGB24 in nifti and multichanneled tiff (RGB)

Issue - State: closed - Opened by xgui3783 over 3 years ago - 1 comment
Labels: enhancement

#12 - get_accessor_for_url doesn't recognize Windows filesystem paths

Issue - State: closed - Opened by sevaa almost 4 years ago - 1 comment
Labels: wontfix

#11 - pypi version has bug

Issue - State: closed - Opened by falkben over 6 years ago - 1 comment

#10 - tqdm causes slices-to-precomputed to fail

Issue - State: closed - Opened by falkben over 6 years ago - 2 comments

#9 - allow uint64 images load correctly in scikit-image

Pull Request - State: closed - Opened by falkben over 6 years ago - 1 comment

#8 - uint64 TIFF files not loading (scikit-image loader only supports strings as input not Path objects)

Issue - State: closed - Opened by falkben over 6 years ago

#7 - flat files not created with '--flat' option using slices-to-precomputed command

Issue - State: closed - Opened by falkben over 6 years ago - 2 comments

#6 - Off-by-one when converting Nifti with scaling to integer data_type

Issue - State: closed - Opened by ylep over 6 years ago - 1 comment

#5 - UnboundLocalError: local variable 'triangles' referenced before assignment

Issue - State: closed - Opened by xgui3783 almost 7 years ago - 1 comment

#4 - conversion of nii file to segmentations, NG does not properly display converted segment if original encoding is float instead of uint

Issue - State: closed - Opened by xgui3783 almost 7 years ago - 1 comment

#3 - Add options to output data in a way directly consummable by neuroglancer

Pull Request - State: closed - Opened by pacher over 7 years ago

#2 - Add option to load full volume to memory

Pull Request - State: closed - Opened by pacher over 7 years ago - 2 comments

#1 - Add converter from STL ASCII to pre-computed NG mesh format

Pull Request - State: closed - Opened by pacher over 7 years ago

GitHub / HumanBrainProject/neuroglancer-scripts issues and pull requests