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GitHub / HenrikBengtsson/future.batchtools issues and pull requests

#89 - Correct grammatical error

Pull Request - State: open - Opened by billdenney over 1 year ago

#88 - Error: Log file for job with id 1 not available

Issue - State: closed - Opened by gowerc almost 2 years ago - 6 comments

#87 - PERFORMANCE: status() to memoize "finalized" state?

Issue - State: closed - Opened by HenrikBengtsson almost 2 years ago - 2 comments

#83 - Add support for plan(batchtools_multicore, workers = I(1))

Issue - State: closed - Opened by HenrikBengtsson almost 2 years ago

#82 - run(), resolved()[?], and result(): the RNG state is updated - from where?

Issue - State: closed - Opened by HenrikBengtsson almost 2 years ago - 3 comments
Labels: bug

#81 - TESTS: Error: identical(Sys.getenv(), oenvs0) is not TRUE on MS Windows CRAN

Issue - State: closed - Opened by HenrikBengtsson almost 2 years ago - 1 comment

#80 - Compatibility with promises package

Issue - State: closed - Opened by michaelmayer2 almost 3 years ago - 2 comments

#79 - print() for BatchtoolsFuture should report on the template file used

Issue - State: closed - Opened by HenrikBengtsson almost 3 years ago - 1 comment

#78 - batchtools templates: `resources[["asis"]]` for as-is declarations

Issue - State: open - Opened by HenrikBengtsson almost 3 years ago - 1 comment

#77 - Add batchtools template for SGE

Issue - State: closed - Opened by HenrikBengtsson almost 3 years ago

#75 - Problem forwarding batchtools resources to individual futures

Issue - State: open - Opened by wlandau about 3 years ago - 4 comments

#74 - Proposed bugfix for batchtools reveals bug in future.batchtools?

Issue - State: open - Opened by stuvet over 3 years ago - 4 comments

#73 - Slurm readLog() Error - Option to change fs.latency & scheduler.latency from batchtools_slurm or future::tweak

Issue - State: closed - Opened by stuvet over 3 years ago - 10 comments
Labels: feature request

#72 - Simple chunking with nested parallelism

Issue - State: closed - Opened by rrichmond over 3 years ago - 1 comment
Labels: question

#71 - Eqw on SGE cluster while R code finishes without error

Issue - State: open - Opened by Luqing-Zhang over 3 years ago

#70 - use batchtools directly for scheduling

Issue - State: open - Opened by myoung3 almost 4 years ago

#69 - huge results file with 'conditions' - performance bottleneck

Issue - State: closed - Opened by kkmann almost 4 years ago - 4 comments

#68 - batchtools_slurm futures block (Was: stdout/stderr to log file only when using slurm?)

Issue - State: open - Opened by privefl almost 4 years ago - 18 comments
Labels: question

#67 - Add nbrOfFreeWorkers()

Issue - State: closed - Opened by HenrikBengtsson almost 4 years ago - 2 comments
Labels: enhancement

#66 - R-devel: sprintf() coding mistakes

Issue - State: closed - Opened by HenrikBengtsson about 4 years ago

#65 - Large overhead cleaning up SGE futures

Issue - State: closed - Opened by wlandau about 4 years ago - 9 comments

#64 - future.cache.path option broken

Issue - State: closed - Opened by rimorob about 4 years ago - 4 comments
Labels: invalid, question

#63 - segfault

Issue - State: closed - Opened by rimorob about 4 years ago - 3 comments

#62 - Collecting results without SSH key pair

Issue - State: closed - Opened by mhesselbarth about 4 years ago - 1 comment

#61 - Getting started with plan("batchtools_lsf")

Issue - State: closed - Opened by fboehm about 4 years ago - 2 comments
Labels: question

#60 - Do I need a shared directory when using a batchtools_slurm plan?

Issue - State: closed - Opened by yimyom over 4 years ago - 2 comments
Labels: question

#59 - doJobCollection error

Issue - State: open - Opened by mkrzak over 4 years ago
Labels: question

#58 - CLEANUP: Drop S3 method await()

Issue - State: closed - Opened by HenrikBengtsson over 4 years ago

#57 - WISH: Update the default to use a finite number of HPC workers

Issue - State: closed - Opened by HenrikBengtsson over 4 years ago
Labels: feature request

#55 - TESTS: Don't use local temp folder for HPC backends

Issue - State: closed - Opened by HenrikBengtsson over 4 years ago - 5 comments

#54 - Odd problem running on SGE cluster

Issue - State: closed - Opened by rimorob over 4 years ago - 9 comments

#53 - Setting export compression

Issue - State: closed - Opened by benmarchi over 4 years ago - 4 comments
Labels: feature request

#52 - WISH: Limit default number of workers (instead of +Inf)

Issue - State: closed - Opened by HenrikBengtsson almost 5 years ago

#51 - Listing of jobs failed (exit code 127); qstat command not found

Issue - State: closed - Opened by nick-youngblut about 5 years ago - 2 comments
Labels: question

#50 - Jobs are submitted succesfully, but only runs on head node

Issue - State: closed - Opened by majorbytes over 5 years ago - 2 comments
Labels: question

#49 - BUG: Odd interaction with BatchJobs package

Issue - State: open - Opened by HenrikBengtsson over 5 years ago
Labels: bug

#48 - Error: BatchtoolsExpiration: Future ('<none>')

Issue - State: closed - Opened by nick-youngblut over 5 years ago - 1 comment

#47 - CHECKS: Remove folder .future/ created by R CMD check

Issue - State: closed - Opened by HenrikBengtsson over 5 years ago

#46 - rscript object missing under nested future topology (login->cluster->session)

Issue - State: closed - Opened by coatless over 5 years ago - 3 comments

#45 - Problem with slurm backend when calling scancel

Issue - State: open - Opened by statquant over 5 years ago - 2 comments

#44 - singularity support?

Issue - State: closed - Opened by kkmann over 5 years ago - 1 comment
Labels: question

#43 - Loading back results from workers to the master process

Issue - State: closed - Opened by statquant over 5 years ago - 1 comment

#42 - Failed to load package error

Issue - State: closed - Opened by statquant over 5 years ago - 9 comments
Labels: question

#41 - Cannot get toy example to work, could you kindly guide me for config ?

Issue - State: closed - Opened by statquant over 5 years ago - 3 comments
Labels: question

#40 - setting strategy to mimic rmpi/dompi

Issue - State: open - Opened by yonicd over 5 years ago - 2 comments

#39 - setting 1 job per worker core after chunking the elements

Issue - State: open - Opened by yonicd almost 6 years ago - 14 comments

#38 - Result of nested {remote} -> {batchtools_slurm} -> {multicore} not distributed back to local machine

Issue - State: closed - Opened by tpilz almost 6 years ago - 3 comments
Labels: question

#37 - setting the finalize option in tweak [options future.delete = FALSE]

Issue - State: closed - Opened by yonicd almost 6 years ago - 6 comments
Labels: feature request

#36 - steps to speed up job submission?

Issue - State: open - Opened by brendanf almost 6 years ago - 13 comments
Labels: question

#34 - Should 'workers = <character>' be allowed?

Issue - State: closed - Opened by HenrikBengtsson almost 6 years ago
Labels: bug

#33 - BUG: Argument 'workers' cannot be a function

Issue - State: closed - Opened by HenrikBengtsson almost 6 years ago
Labels: bug

#32 - Add option to control how number of logged output lines display in error messages

Issue - State: closed - Opened by HenrikBengtsson about 6 years ago - 1 comment
Labels: enhancement

#31 - Future ('<none>') expired

Issue - State: closed - Opened by mhesselbarth about 6 years ago - 2 comments

#30 - .future folder

Issue - State: closed - Opened by marcosci about 6 years ago - 7 comments

#29 - Using HTcondor with future.batchtools

Issue - State: open - Opened by yonicd over 6 years ago - 8 comments

#27 - Request: add support for preemption

Issue - State: open - Opened by tantrev over 6 years ago - 1 comment
Labels: enhancement, feature request

#26 - config for batchtools_sge?

Issue - State: open - Opened by nick-youngblut over 6 years ago - 9 comments
Labels: question

#25 - setting .future as defaultRegistery

Issue - State: open - Opened by yonicd over 6 years ago - 7 comments
Labels: feature request

#24 - Socket timed out on send/recv operation

Issue - State: closed - Opened by jasonserviss over 6 years ago - 2 comments

#23 - array.jobs supported for SLURM systems?

Issue - State: open - Opened by jgrn307 over 6 years ago - 3 comments
Labels: feature request

#22 - BUG in future.batchtools (= 0.7.0): Error in readLog(id, reg = reg)

Issue - State: closed - Opened by HenrikBengtsson over 6 years ago - 1 comment
Labels: bug

#21 - retrieve future expression on local machine

Issue - State: open - Opened by marcosci over 6 years ago - 1 comment
Labels: question, feature request

#20 - Roxygen2 comments are now Markdown compatible

Pull Request - State: closed - Opened by gara-z over 6 years ago - 1 comment

#19 - workers is not respected by future() - only future_lapply()

Issue - State: closed - Opened by HenrikBengtsson almost 7 years ago - 2 comments
Labels: bug

#18 - max.concurrent.jobs interface?

Issue - State: closed - Opened by kendonB about 7 years ago - 8 comments

#17 - Make jobname match number in batchtools_XXXXXXXXXX by default when using SLURM?

Issue - State: closed - Opened by kendonB about 7 years ago - 5 comments

#16 - Collect MaxRSS/Elapsed from sacct when using SLURM?

Issue - State: open - Opened by kendonB about 7 years ago - 1 comment
Labels: feature request

#15 - DOCS: Better describe argument `workers`

Issue - State: closed - Opened by HenrikBengtsson about 7 years ago
Labels: enhancement

#14 - Add support for controlling the submission rate of jobs

Issue - State: closed - Opened by HenrikBengtsson about 7 years ago - 2 comments
Labels: enhancement

#13 - "Submission rate too high" with a large future_lapply

Issue - State: closed - Opened by kendonB about 7 years ago - 7 comments

#12 - TORQUE trouble

Issue - State: closed - Opened by wlandau-lilly about 7 years ago - 4 comments

#11 - Resolving a batchtools_slurm-related error, probably a configuration problem

Issue - State: closed - Opened by wlandau-lilly about 7 years ago - 9 comments

#10 - Implement batchtools_config

Issue - State: closed - Opened by mllg about 7 years ago - 7 comments
Labels: enhancement

#9 - Example template files for SLURM and the Sun/Univa Grid Engine

Issue - State: closed - Opened by wlandau-lilly about 7 years ago - 7 comments

#8 - WISH: Make %label% the job name for schedulers

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 1 comment
Labels: enhancement

#7 - WISH: Polling frequency

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 2 comments
Labels: enhancement

#6 - WISH: Try to report on scheduler-specific errors (e.g. 'PBS: job killed')

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 2 comments
Labels: enhancement

#5 - Add fallback batchtools templates in future.batchtools package

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 1 comment
Labels: enhancement

#4 - packages correctly loaded for future_lapply

Pull Request - State: closed - Opened by jeremyrcoyle over 7 years ago - 3 comments

#3 - packages correctly loaded for future_lapply

Pull Request - State: closed - Opened by jeremyrcoyle over 7 years ago - 2 comments

#2 - Add batchtools_custom

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 1 comment
Labels: enhancement

#1 - Add batchtools_docker

Issue - State: open - Opened by HenrikBengtsson over 7 years ago - 1 comment
Labels: enhancement