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GitHub / HenrikBengtsson/future.BatchJobs issues and pull requests
#79 - CLEANUP: Drop S3 method await()
Issue -
State: closed - Opened by HenrikBengtsson almost 4 years ago
#78 - Deprecation of future.BatchJobs package
Issue -
State: closed - Opened by HenrikBengtsson almost 4 years ago
#77 - CHECKS: Remove folder .future/ created by R CMD check
Issue -
State: closed - Opened by HenrikBengtsson over 5 years ago
#76 - Should 'workers = <character>' be allowed?
Issue -
State: closed - Opened by HenrikBengtsson almost 6 years ago
Labels: bug
#75 - BUG: Argument 'workers' cannot be a function
Issue -
State: closed - Opened by HenrikBengtsson almost 6 years ago
Labels: bug
#74 - CLEANUP: Deprecate and defunct
Issue -
State: closed - Opened by HenrikBengtsson over 7 years ago
#73 - TESTS: Remove test with future::plan(lazy), which is deprecated and will be defunct soon
Issue -
State: closed - Opened by HenrikBengtsson over 7 years ago
- 1 comment
#72 - batchjobs_*(): Add argument `workers` to specify number of workers
Issue -
State: closed - Opened by HenrikBengtsson over 7 years ago
- 1 comment
#71 - Error with developers version of BatchJobs (> 1.6)
Issue -
State: closed - Opened by HenrikBengtsson almost 8 years ago
#70 - job.delay supported on torque cluster?
Issue -
State: closed - Opened by sorhawell almost 8 years ago
- 2 comments
#69 - Is support for BatchTools planned?
Issue -
State: closed - Opened by alexvorobiev about 8 years ago
- 4 comments
#68 - Accept also labels that are not compatible with BatchJobs IDs
Issue -
State: closed - Opened by HenrikBengtsson about 8 years ago
- 1 comment
Labels: enhancement
#67 - BatchJobs sometimes returns Error syncing registry... database is locked
Issue -
State: closed - Opened by alexvorobiev over 8 years ago
- 8 comments
Labels: enhancement
#66 - VIGNETTE: Mention tweak() using an example
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement
#65 - Option to turn on the progress bar?
Issue -
State: closed - Opened by alexvorobiev over 8 years ago
- 4 comments
#64 - No way to pass resources parameter to SLURM?
Issue -
State: closed - Opened by alexvorobiev over 8 years ago
- 9 comments
#63 - SPEED: Polling intervals should be reset when job is launched
Issue -
State: open - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement
#62 - Make it possible to pass `...` of batchjobs_by_template() to the template environment
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 1 comment
Labels: enhancement
#61 - Implement separate batchjobs future constructors
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 1 comment
Labels: enhancement
#60 - BatchJobs hiccups that we may be able to work around
Issue -
State: open - Opened by HenrikBengtsson over 8 years ago
- 4 comments
#59 - TEST: Test for `backend="multicore"` future gives error on OS X (R 3.2.3)
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 2 comments
Labels: bug
#58 - Report also on job output for BatchJobFutureError:s
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 3 comments
Labels: enhancement
#57 - FOR THE RECORD: When TORQUE/PBS kills a job using too much memory it causes a BatchJobs "expiration" error
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
#56 - TROUBLESHOOTING: Keep job registry files to simplify troubleshooting
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 1 comment
Labels: enhancement
#55 - BUG: Exported globals are overridden by base and BatchJobs objects
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 3 comments
Labels: bug
#54 - CLEANUP: Rename package to future.BatchJobs
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
#53 - Future Resources: Make number of tasks a first-class citizen
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 4 comments
Labels: enhancement
#52 - TROUBLESHOOTING: More informative error message than "fatal error occured: 101. qsub produced exit code 27; output qsub: submit error ..."
Issue -
State: open - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement
#51 - Make BatchJobsFuture self contained, i.e. move away from asyncBatchEvalQ()
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement
#50 - CLEANUP: Rename BatchJobsAsyncTask to BatchJobsFuture
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement
#49 - backend() needs to called explicitly to override the default setup when package is loaded
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 1 comment
Labels: bug
#48 - Add argument `resources` for BatchJobsAsyncTask
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 3 comments
Labels: enhancement
#47 - Update asyncBatchEvalQ() to handle globals just like future package
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
- 2 comments
Labels: enhancement
#46 - Update debug option `async::debug` to `future.debug`
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement
#45 - Add class attibute to batchjobs()
Issue -
State: closed - Opened by HenrikBengtsson over 8 years ago
#44 - Separate .async/ subdirectory for each R session
Issue -
State: closed - Opened by HenrikBengtsson almost 9 years ago
- 3 comments
Labels: enhancement
#43 - WORKAROUND: Encode variable names before exporting to BatchJobs
Issue -
State: closed - Opened by HenrikBengtsson about 9 years ago
- 1 comment
Labels: enhancement, help wanted
#42 - LIMITATIONS: It is not possible to export globals starting with a period
Issue -
State: closed - Opened by HenrikBengtsson about 9 years ago
- 1 comment
Labels: help wanted
#41 - Update batchjobs() to handle `...` the same way lazy() does it
Issue -
State: closed - Opened by HenrikBengtsson about 9 years ago
Labels: bug, enhancement
#40 - %plan% batchjobs(backend=...) does not undo the backend - should it?
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: bug
#39 - LIMITATION: It is not possible to export operators, replacement functions etc.
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
#38 - Add multicore future based on the 'parallel' package
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 2 comments
Labels: enhancement
#37 - Debugging: Record BatchJobs cluster functions in task object
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: enhancement
#36 - CLEANUP: Drop asyncEvalQ()
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
#35 - CLEANUP: Turn BatchJobsAsyncTask() into a simple constructor
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
#34 - CLEANUP: Drop makeClusterFunctionsRscript()
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
#33 - CLEANUP: Drop async() - use batchjobs() instead
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
#32 - CLEANUP: Drop delayedAssign() operator %<-%
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
#31 - Rename this package to BatchJobsFuture?
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: question
#30 - Add argument 'backend' to tempRegistry()
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: enhancement
#29 - There should also be a way to export options(), par() etc.
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement, help wanted, question
#28 - Lazy futures: Add argument to specify how/when globals are resolved?
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement, question
#27 - The backend already set is overridden iff BatchJobs is loaded "on-the-fly" later
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: bug
#26 - `%<=%` currently requires `options(future=async)`
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: bug
#25 - Add LazyFuture using delayedAssign() - just for demonstration
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: enhancement
#24 - The <<- assignment triggers a false error on a missing global variable
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: bug, help wanted
#23 - Move asAssignTarget() to listenv
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement
#22 - Create a separate 'globals' package?
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement, help wanted
#21 - IDEA: magrittr-flavored piping: y <- f(x) %>% async
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: wontfix
#20 - MEMOIZATION: Add operator for plain memoization, e.g. y %<-$% f(x)
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 2 comments
#19 - FACT: backend("multicore=2"): Two jobs at the time can run asynchroneously before (a)wait
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 2 comments
Labels: enhancement, help wanted
#18 - backend("multicore") should acknowledge assigned number of cores, if possible
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: enhancement
#17 - asyncEvalQ() is not longer dispatching to jobs workers
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 2 comments
Labels: bug
#16 - GLOBALS: findGlobals() on locally defined S3 methods (fails)
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: bug, enhancement, help wanted
#15 - DOCUMENT: Add more details to help("backend")
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement, help wanted
#14 - Recursive async by exporting AsyncTask instead of value?
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 2 comments
Labels: enhancement, help wanted, question
#13 - GLOBALS: Add protection against exporting too large objects by mistake
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement, help wanted
#12 - `%<=%` (or delayedAsyncAssign()) assigns AsyncTask to the wrong environment
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: bug, help wanted
#11 - status() on a AsyncTask launched via %<=% stalls
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: bug, help wanted, invalid
#10 - Add AsyncError class for richer exception handling and error messages
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement, help wanted
#9 - CLEANUP: Move BatchJobs work directories to ./async/<id>/
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement
#8 - AsyncListEnv extending listenv
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 2 comments
Labels: enhancement, help wanted
#7 - MEMOIZATION: Use deterministic jobs names
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 2 comments
Labels: enhancement, help wanted, invalid
#6 - GLOBALS: findGlobals() incorrectly detects 'x' as a global in subset(df, x < 3)
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: help wanted
#5 - GLOBALS: findGlobals() fails to detect/report global if same symbol is used locally
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 2 comments
Labels: bug, help wanted
#4 - Add support for inspect() on listenv:s as well
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 3 comments
Labels: enhancement
#3 - backend(<pathname>)
Issue -
State: closed - Opened by HenrikBengtsson almost 10 years ago
- 1 comment
Labels: enhancement, help wanted
#2 - Add listenv() - an environment with ordered elements, i.e. that can be iterated over
Issue -
State: closed - Opened by HenrikBengtsson almost 10 years ago
- 1 comment
Labels: enhancement
#1 - GLOBALS: Have find/getGlobals() utilize BiocParallel::bpvalidate()?
Issue -
State: closed - Opened by HenrikBengtsson almost 10 years ago
- 2 comments
Labels: enhancement, help wanted