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GitHub / HenrikBengtsson/future.BatchJobs issues and pull requests

#79 - CLEANUP: Drop S3 method await()

Issue - State: closed - Opened by HenrikBengtsson almost 4 years ago

#78 - Deprecation of future.BatchJobs package

Issue - State: closed - Opened by HenrikBengtsson almost 4 years ago

#77 - CHECKS: Remove folder .future/ created by R CMD check

Issue - State: closed - Opened by HenrikBengtsson over 5 years ago

#76 - Should 'workers = <character>' be allowed?

Issue - State: closed - Opened by HenrikBengtsson almost 6 years ago
Labels: bug

#75 - BUG: Argument 'workers' cannot be a function

Issue - State: closed - Opened by HenrikBengtsson almost 6 years ago
Labels: bug

#74 - CLEANUP: Deprecate and defunct

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago

#72 - batchjobs_*(): Add argument `workers` to specify number of workers

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 1 comment

#71 - Error with developers version of BatchJobs (> 1.6)

Issue - State: closed - Opened by HenrikBengtsson almost 8 years ago

#70 - job.delay supported on torque cluster?

Issue - State: closed - Opened by sorhawell almost 8 years ago - 2 comments

#69 - Is support for BatchTools planned?

Issue - State: closed - Opened by alexvorobiev about 8 years ago - 4 comments

#68 - Accept also labels that are not compatible with BatchJobs IDs

Issue - State: closed - Opened by HenrikBengtsson about 8 years ago - 1 comment
Labels: enhancement

#67 - BatchJobs sometimes returns Error syncing registry... database is locked

Issue - State: closed - Opened by alexvorobiev over 8 years ago - 8 comments
Labels: enhancement

#66 - VIGNETTE: Mention tweak() using an example

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement

#65 - Option to turn on the progress bar?

Issue - State: closed - Opened by alexvorobiev over 8 years ago - 4 comments

#64 - No way to pass resources parameter to SLURM?

Issue - State: closed - Opened by alexvorobiev over 8 years ago - 9 comments

#63 - SPEED: Polling intervals should be reset when job is launched

Issue - State: open - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement

#62 - Make it possible to pass `...` of batchjobs_by_template() to the template environment

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 1 comment
Labels: enhancement

#61 - Implement separate batchjobs future constructors

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 1 comment
Labels: enhancement

#60 - BatchJobs hiccups that we may be able to work around

Issue - State: open - Opened by HenrikBengtsson over 8 years ago - 4 comments

#59 - TEST: Test for `backend="multicore"` future gives error on OS X (R 3.2.3)

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 2 comments
Labels: bug

#58 - Report also on job output for BatchJobFutureError:s

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 3 comments
Labels: enhancement

#56 - TROUBLESHOOTING: Keep job registry files to simplify troubleshooting

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 1 comment
Labels: enhancement

#55 - BUG: Exported globals are overridden by base and BatchJobs objects

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 3 comments
Labels: bug

#54 - CLEANUP: Rename package to future.BatchJobs

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago

#53 - Future Resources: Make number of tasks a first-class citizen

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 4 comments
Labels: enhancement

#51 - Make BatchJobsFuture self contained, i.e. move away from asyncBatchEvalQ()

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement

#50 - CLEANUP: Rename BatchJobsAsyncTask to BatchJobsFuture

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement

#49 - backend() needs to called explicitly to override the default setup when package is loaded

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 1 comment
Labels: bug

#48 - Add argument `resources` for BatchJobsAsyncTask

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 3 comments
Labels: enhancement

#47 - Update asyncBatchEvalQ() to handle globals just like future package

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 2 comments
Labels: enhancement

#46 - Update debug option `async::debug` to `future.debug`

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago
Labels: enhancement

#45 - Add class attibute to batchjobs()

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago

#44 - Separate .async/ subdirectory for each R session

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago - 3 comments
Labels: enhancement

#43 - WORKAROUND: Encode variable names before exporting to BatchJobs

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago - 1 comment
Labels: enhancement, help wanted

#42 - LIMITATIONS: It is not possible to export globals starting with a period

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago - 1 comment
Labels: help wanted

#41 - Update batchjobs() to handle `...` the same way lazy() does it

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago
Labels: bug, enhancement

#40 - %plan% batchjobs(backend=...) does not undo the backend - should it?

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: bug

#38 - Add multicore future based on the 'parallel' package

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 2 comments
Labels: enhancement

#37 - Debugging: Record BatchJobs cluster functions in task object

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: enhancement

#36 - CLEANUP: Drop asyncEvalQ()

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago

#34 - CLEANUP: Drop makeClusterFunctionsRscript()

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago

#33 - CLEANUP: Drop async() - use batchjobs() instead

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago

#32 - CLEANUP: Drop delayedAssign() operator %<-%

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago

#31 - Rename this package to BatchJobsFuture?

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: question

#30 - Add argument 'backend' to tempRegistry()

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: enhancement

#29 - There should also be a way to export options(), par() etc.

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement, help wanted, question

#28 - Lazy futures: Add argument to specify how/when globals are resolved?

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement, question

#27 - The backend already set is overridden iff BatchJobs is loaded "on-the-fly" later

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: bug

#26 - `%<=%` currently requires `options(future=async)`

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: bug

#25 - Add LazyFuture using delayedAssign() - just for demonstration

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: enhancement

#24 - The <<- assignment triggers a false error on a missing global variable

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: bug, help wanted

#23 - Move asAssignTarget() to listenv

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement

#22 - Create a separate 'globals' package?

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement, help wanted

#21 - IDEA: magrittr-flavored piping: y <- f(x) %>% async

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: wontfix

#20 - MEMOIZATION: Add operator for plain memoization, e.g. y %<-$% f(x)

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 2 comments

#19 - FACT: backend("multicore=2"): Two jobs at the time can run asynchroneously before (a)wait

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 2 comments
Labels: enhancement, help wanted

#18 - backend("multicore") should acknowledge assigned number of cores, if possible

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: enhancement

#17 - asyncEvalQ() is not longer dispatching to jobs workers

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 2 comments
Labels: bug

#16 - GLOBALS: findGlobals() on locally defined S3 methods (fails)

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: bug, enhancement, help wanted

#15 - DOCUMENT: Add more details to help("backend")

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement, help wanted

#14 - Recursive async by exporting AsyncTask instead of value?

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 2 comments
Labels: enhancement, help wanted, question

#13 - GLOBALS: Add protection against exporting too large objects by mistake

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement, help wanted

#12 - `%<=%` (or delayedAsyncAssign()) assigns AsyncTask to the wrong environment

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: bug, help wanted

#11 - status() on a AsyncTask launched via %<=% stalls

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: bug, help wanted, invalid

#10 - Add AsyncError class for richer exception handling and error messages

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement, help wanted

#9 - CLEANUP: Move BatchJobs work directories to ./async/<id>/

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement

#8 - AsyncListEnv extending listenv

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 2 comments
Labels: enhancement, help wanted

#7 - MEMOIZATION: Use deterministic jobs names

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 2 comments
Labels: enhancement, help wanted, invalid

#6 - GLOBALS: findGlobals() incorrectly detects 'x' as a global in subset(df, x < 3)

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: help wanted

#5 - GLOBALS: findGlobals() fails to detect/report global if same symbol is used locally

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 2 comments
Labels: bug, help wanted

#4 - Add support for inspect() on listenv:s as well

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 3 comments
Labels: enhancement

#3 - backend(<pathname>)

Issue - State: closed - Opened by HenrikBengtsson almost 10 years ago - 1 comment
Labels: enhancement, help wanted

#2 - Add listenv() - an environment with ordered elements, i.e. that can be iterated over

Issue - State: closed - Opened by HenrikBengtsson almost 10 years ago - 1 comment
Labels: enhancement

#1 - GLOBALS: Have find/getGlobals() utilize BiocParallel::bpvalidate()?

Issue - State: closed - Opened by HenrikBengtsson almost 10 years ago - 2 comments
Labels: enhancement, help wanted