Ecosyste.ms: Issues

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GitHub / HenrikBengtsson/aroma.affymetrix issues and pull requests

#43 - MOUSEDIVm520650 CDF file

Issue - State: open - Opened by DesmondSmith over 1 year ago

#42 - question about genome information file

Issue - State: open - Opened by zhangjsyeah about 3 years ago - 4 comments
Labels: question

#41 - CLEANUP: Stop testing against deprecated future.BatchJobs

Issue - State: closed - Opened by HenrikBengtsson almost 4 years ago

#40 - doCRMAv2() error:Do not know how to unwrap object: AromaUnitTotalCnBinarySet

Issue - State: closed - Opened by MimoriK about 4 years ago - 3 comments
Labels: bug

#39 - ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [cbind, rbind]

Issue - State: open - Opened by HenrikBengtsson over 4 years ago - 1 comment

#36 - CLEANUP: Import throw() from R.oo (>= 1.23.0)

Issue - State: closed - Opened by HenrikBengtsson about 5 years ago

#35 - CRAN: Errors in Windows due to failed file linking

Issue - State: closed - Opened by HenrikBengtsson almost 6 years ago - 2 comments
Labels: bug

#34 - Some Question About Installing this R package

Issue - State: open - Opened by liuzhe93 almost 6 years ago
Labels: question

#33 - R-devel / CRAN errors

Issue - State: closed - Opened by HenrikBengtsson over 6 years ago - 1 comment
Labels: bug

#32 - Dropped semicolon at end of line

Pull Request - State: closed - Opened by gara-z over 6 years ago - 1 comment

#31 - BUG: R CMD check "Note: break used in wrong context: no loop is visible"

Issue - State: closed - Opened by HenrikBengtsson over 6 years ago - 1 comment
Labels: bug

#30 - Updating from 3.0.0 to 3.1.0 failed

Issue - State: closed - Opened by ThomasGro about 7 years ago - 3 comments

#29 - Most Affymetrix URLs are broken since now moved to https://www.thermofisher.com/

Issue - State: open - Opened by HenrikBengtsson over 7 years ago - 2 comments
Labels: bug, help wanted

#28 - Error: '%<=%' is defunct. Use '%<-%' instead.

Issue - State: closed - Opened by louievdl over 7 years ago - 10 comments

#26 - affyio::read.celfile.header() requires methods package to be attached?

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 1 comment

#25 - Reformat NEWS

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 1 comment

#24 - CLEANUP: Drop reporting on RAM size for File/Set objects

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 1 comment

#23 - ROBUSTNESS: Make sure search file reg exp patterns have trailing $

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 1 comment
Labels: enhancement

#21 - README should give proper installation instructions

Issue - State: closed - Opened by HenrikBengtsson over 8 years ago - 1 comment
Labels: enhancement

#20 - Command line: Turn doNnn() functions into CmdArgsFunction:s

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago
Labels: enhancement

#19 - PARALLEL: PLM fit() and processing chunks in parallel

Issue - State: open - Opened by HenrikBengtsson almost 9 years ago
Labels: enhancement

#18 - Use IEC units KiB, MiB, GiB, ... for file sizes

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago - 2 comments
Labels: enhancement

#17 - Add checksum file generation for FIRMAscores.CEL files

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago
Labels: enhancement

#16 - Generate checksum files for all data files part of the package

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago
Labels: enhancement

#15 - TESTS: "system" on GenomeWideSNP_6 takes ~3.5 hours to complete

Issue - State: open - Opened by HenrikBengtsson almost 9 years ago - 2 comments
Labels: enhancement

#14 - TESTS: "addons" tests for GSE12702 runs 40 samples and takes ~3 hours - can we use fewer to speed it up?

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago - 1 comment
Labels: enhancement

#13 - REPRODUCIBILITY: Add argument `seed` to GcRmaBackgroundCorrection

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago - 1 comment
Labels: enhancement

#12 - FUTURE: Use do.call(fcn, ...) - not do.call("fcn", ...)

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago
Labels: enhancement

#11 - Subsetting by name on empty AffymetrixCelSet tries to read non-existing CEL file

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago - 3 comments
Labels: bug

#10 - ROBUSTNESS: process() for MatNormalization does not create CEL files atomically

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago
Labels: enhancement

#9 - DUPLICATED issue

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago
Labels: enhancement

#8 - REPRODUCIBILITY: Created CEL files carry creation timestamp in header => non-unique CEL files

Issue - State: open - Opened by HenrikBengtsson about 9 years ago - 2 comments
Labels: enhancement

#7 - CLEANUP: Use anyNA() - drop anyMissing()

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago

#6 - METACRAN: Keep README.md so it appears on METACRAN

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago
Labels: enhancement

#5 - CLEANUP: Make deprecated functions/methods defunct

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago
Labels: enhancement

#4 - CLEANUP: Drop defunct functions/methods

Issue - State: closed - Opened by HenrikBengtsson about 9 years ago
Labels: enhancement

#3 - doCRMAv2() and similar may return a non-bijective set (even when all is output exists)

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: bug, help wanted, question

#2 - Declare all S3 methods in NAMESPACE

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago
Labels: help wanted, CRAN Policy

#1 - Update package title to use Title Case

Issue - State: closed - Opened by HenrikBengtsson almost 10 years ago - 1 comment
Labels: CRAN Policy