HenrikBengtsson/TopDom issues and pull requests

#24 - In rm(list = "idxs") : object 'idxs' not found

Issue - State: open - Opened by stubbsrl over 1 year ago

#23 - Update TopDom.R

Pull Request - State: open - Opened by Delta-43 over 1 year ago

#22 - Error at Step 4

Issue - State: closed - Opened by esebesty over 3 years ago - 1 comment

#21 - Found new TopDom home

Issue - State: closed - Opened by HenrikBengtsson over 4 years ago - 1 comment

#20 - ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [rbind]

Issue - State: closed - Opened by HenrikBengtsson over 4 years ago - 1 comment

#19 - ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [data.frame]

Issue - State: closed - Opened by HenrikBengtsson over 4 years ago

#18 - ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [read.table]

Issue - State: closed - Opened by HenrikBengtsson over 4 years ago

#17 - Error in wilcox.test.default(x = dia * scale, y = c(ups, downs), alternative = "less", : not enough (finite) 'x' observations

Issue - State: open - Opened by HenrikBengtsson over 4 years ago

#16 - REFERENCE: Hanjun Shin's PhD Thesis (partly on their TopDom development)

Issue - State: closed - Opened by HenrikBengtsson almost 5 years ago

#15 - Memory error

Issue - State: open - Opened by Nohaosma almost 5 years ago - 2 comments

#14 - Error in last step

Issue - State: closed - Opened by KunFang93 almost 5 years ago - 2 comments

#13 - new feature

Issue - State: open - Opened by chaoscicada about 5 years ago

#12 - File Format Issue

Issue - State: open - Opened by anupambh about 5 years ago - 1 comment

#11 - Important note from package maintainer

Issue - State: open - Opened by HenrikBengtsson about 5 years ago

#10 - error when processing dense matrix

Issue - State: open - Opened by musiccccc about 5 years ago - 2 comments

#9 - Question about the Tags column

Issue - State: open - Opened by QianzhaoJ over 5 years ago - 4 comments
Labels: question

#8 - BUG: TopDom() may produce Error in `[<-.data.frame`(`tmp`, , "to.coord", value = c(NA, 2500, 247500 : replacement has 3 rows, data has 1

Issue - State: closed - Opened by HenrikBengtsson over 5 years ago - 2 comments
Labels: bug

#7 - overlapScores(a, b): clarify which of 'a' and 'b' is the reference

Issue - State: closed - Opened by HenrikBengtsson almost 6 years ago - 1 comment
Labels: enhancement

#6 - Add countsByRegion(data, region) to extract count data for a given region

Issue - State: closed - Opened by HenrikBengtsson about 6 years ago

#5 - Add TopDom_0.0.2() function

Issue - State: closed - Opened by HenrikBengtsson over 6 years ago

#4 - BUG: Error in if (x[cp$cp[i]] >= x[cp$cp[i] - 1] && x[cp$cp[i]] >= x[cp$cp[i] + : missing value where TRUE/FALSE needed

Issue - State: closed - Opened by HenrikBengtsson over 6 years ago - 1 comment
Labels: bug

#3 - BUG: TopDom(statFilter = TRUE) seems incorrect

Issue - State: closed - Opened by HenrikBengtsson over 6 years ago - 4 comments

#2 - Implement the overlap score