HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite issues and pull requests

#87 - 80 update pytests

Pull Request - State: open - Opened by lisa-sousa about 2 months ago
Labels: documentation

#86 - Faster heuristic method to generate non-overlapping sets

Pull Request - State: open - Opened by IsraMekki0 about 2 months ago

#85 - 72 database table output

Pull Request - State: closed - Opened by lisa-sousa about 2 months ago

#84 - 81 intergenic sequence computation

Pull Request - State: closed - Opened by lisa-sousa about 2 months ago

#83 - improve computation of oligo sets

Issue - State: open - Opened by lisa-sousa about 2 months ago

#82 - documentation

Issue - State: open - Opened by lisa-sousa about 2 months ago
Labels: documentation

#81 - intergenic sequence computation

Issue - State: closed - Opened by lisa-sousa about 2 months ago
Labels: bug

#80 - update pytests

Issue - State: open - Opened by lisa-sousa about 2 months ago
Labels: documentation

#79 - 77 filter for exon number

Pull Request - State: closed - Opened by lisa-sousa about 2 months ago

#78 - 62 seqfish pipeline

Pull Request - State: closed - Opened by lisa-sousa 2 months ago

#77 - Filter for exon number

Issue - State: closed - Opened by lisa-sousa 2 months ago
Labels: enhancement

#76 - 75 exon junction computation

Pull Request - State: closed - Opened by lisa-sousa 2 months ago

#75 - Exon junction computation

Issue - State: closed - Opened by lisa-sousa 2 months ago
Labels: enhancement

#74 - 71 utr sequence

Pull Request - State: closed - Opened by lisa-sousa 2 months ago

#73 - 69 filter for isoform consensus

Pull Request - State: closed - Opened by lisa-sousa 3 months ago

#72 - Database Table output

Issue - State: closed - Opened by lisa-sousa 3 months ago
Labels: enhancement

#71 - UTR sequence computation

Issue - State: closed - Opened by lisa-sousa 3 months ago
Labels: bug

#70 - Pipelines - entry points

Issue - State: open - Opened by lisa-sousa 3 months ago
Labels: enhancement

#69 - Filter for Isoform Consensus

Issue - State: closed - Opened by lisa-sousa 3 months ago
Labels: enhancement

#68 - remove Bio package for blast and turn into subprocess

Pull Request - State: closed - Opened by lisa-sousa 3 months ago

#67 - Enhance database loading

Pull Request - State: closed - Opened by lisa-sousa 4 months ago

#66 - Merfish pipeline

Pull Request - State: closed - Opened by IsraMekki0 4 months ago

#65 - Implemented heterodimer filter

Pull Request - State: closed - Opened by IsraMekki0 4 months ago

#64 - 53 scrinshot pipeline

Pull Request - State: closed - Opened by lisa-sousa 4 months ago

#63 - Oligo-seq-pipeline

Pull Request - State: closed - Opened by francesco-campi 5 months ago

#62 - SeqFISH pipeline

Issue - State: closed - Opened by lisa-sousa 5 months ago
Labels: invalid

#61 - MERFISH pipeline

Issue - State: open - Opened by lisa-sousa 5 months ago
Labels: invalid

#60 - 52 oligo scoring functions

Pull Request - State: closed - Opened by lisa-sousa 5 months ago

#59 - Bio.Application deprecation warning

Issue - State: closed - Opened by francesco-campi 5 months ago - 1 comment

#58 - Divide OligoAttributes into two classes

Issue - State: open - Opened by lisa-sousa 5 months ago - 2 comments
Labels: enhancement

#57 - Update tests

Pull Request - State: closed - Opened by IsraMekki0 5 months ago

#56 - Changed instances of dictionaries to LRUDDBDict

Pull Request - State: closed - Opened by IsraMekki0 6 months ago - 1 comment

#55 - 49 exact match filter

Pull Request - State: closed - Opened by lisa-sousa 6 months ago

#54 - AI-filters

Pull Request - State: closed - Opened by francesco-campi 7 months ago

#53 - SCRINSHOT pipeline

Issue - State: closed - Opened by lisa-sousa 7 months ago
Labels: invalid

#52 - Oligo Scoring Functions

Issue - State: closed - Opened by lisa-sousa 7 months ago
Labels: enhancement

#51 - 46 oligo database attributes class

Pull Request - State: closed - Opened by lisa-sousa 7 months ago

#50 - Filename for regions_with_insufficient_oligos

Issue - State: closed - Opened by lisa-sousa 7 months ago
Labels: bug

#49 - Exact Match Filter

Issue - State: closed - Opened by lisa-sousa 7 months ago
Labels: bug

#48 - 39 integrate exact match filter into cross hybridization filter

Pull Request - State: closed - Opened by lisa-sousa 7 months ago

#47 - Add codecov

Issue - State: open - Opened by IsraMekki0 8 months ago - 1 comment
Labels: enhancement

#46 - Oligo Database Attributes Class

Issue - State: closed - Opened by lisa-sousa 8 months ago
Labels: enhancement

#45 - Bugfix/test errors

Pull Request - State: closed - Opened by IsraMekki0 8 months ago

#44 - Bugfix/test errors

Pull Request - State: closed - Opened by IsraMekki0 8 months ago - 1 comment

#43 - Types and Constants

Issue - State: closed - Opened by lisa-sousa 8 months ago - 1 comment
Labels: enhancement

#41 - Some tests are not running

Issue - State: closed - Opened by IsraMekki0 8 months ago
Labels: bug

#40 - Integrate the new data structure

Issue - State: closed - Opened by IsraMekki0 8 months ago
Labels: enhancement

#39 - Integrate exact match filter into cross hybridization filter

Issue - State: closed - Opened by IsraMekki0 8 months ago - 1 comment
Labels: enhancement, good first issue

#38 - Feature/refactor_property_filter

Pull Request - State: closed - Opened by francesco-campi 8 months ago

#37 - Feature/refactor property filter

Pull Request - State: closed - Opened by lisa-sousa 8 months ago

#36 - Database refactor

Pull Request - State: closed - Opened by lisa-sousa 10 months ago

#35 - Cross hybrid

Pull Request - State: closed - Opened by IsraMekki0 10 months ago

#34 - Update specificity

Pull Request - State: closed - Opened by IsraMekki0 10 months ago - 1 comment

#33 - Feature/new property filters

Pull Request - State: closed - Opened by IsraMekki0 11 months ago

#32 - Pipelines

Pull Request - State: closed - Opened by IsraMekki0 11 months ago

#31 - Pipelines

Pull Request - State: closed - Opened by lisa-sousa over 1 year ago

#30 - Students dev seqfish

Pull Request - State: closed - Opened by IsraMekki0 over 1 year ago

#29 - Gff parser fix

Pull Request - State: closed - Opened by francesco-campi over 1 year ago

#28 - Students dev seqfish

Pull Request - State: closed - Opened by anniestrvt over 1 year ago

#27 - Student merfish dev 2

Pull Request - State: closed - Opened by Dondonn over 1 year ago

#26 - Updates

Pull Request - State: closed - Opened by hanane9 over 1 year ago

#25 - Padlock pipeline

Pull Request - State: closed - Opened by francesco-campi over 1 year ago

#24 - Refactoring

Pull Request - State: closed - Opened by lisa-sousa over 1 year ago

#23 - Tutorial fix

Pull Request - State: closed - Opened by francesco-campi over 1 year ago - 1 comment

#22 - Databse split

Pull Request - State: closed - Opened by francesco-campi over 1 year ago