HDFGroup/hdf5 issues and pull requests

#4285 - Fix example ref files path

Pull Request - State: closed - Opened by byrnHDF 6 months ago
Labels: Component - Documentation, Type - Bug

#4284 - Sync develop changes March 25 - March 28 to hdf5_1_14

Pull Request - State: closed - Opened by lrknox 6 months ago

#4283 - Fixes for file format security issues

Pull Request - State: closed - Opened by jhendersonHDF 6 months ago
Labels: Merge - To 1.14, Priority - 0. Blocker ⛔, Component - C Library, Component - Tools, Type - Bug

#4282 - Remove CRLF from NEWSLETTER.txt.

Pull Request - State: closed - Opened by lrknox 6 months ago

#4281 - Add TestExpress=0 workflow

Pull Request - State: closed - Opened by byrnHDF 6 months ago
Labels: Merge - Develop Only, Priority - 2. Medium ⏹, Component - Testing, Type - New Feature, Component - Misc

#4280 - Relaxed behavior of H5Pset_page_buffer_size() when opening files

Pull Request - State: closed - Opened by derobins 6 months ago
Labels: Merge - To 1.14, Priority - 1. High 🔼, Component - C Library, Component - Testing, Type - Improvement

#4279 - Fix potential buffer read overflows in H5PB_read

Pull Request - State: closed - Opened by jhendersonHDF 6 months ago - 1 comment
Labels: Merge - To 1.14, Priority - 1. High 🔼, Component - C Library, Type - Bug

#4278 - Fix range check in H5_addr_overlap

Pull Request - State: closed - Opened by jhendersonHDF 6 months ago - 2 comments
Labels: Merge - To 1.14, Priority - 0. Blocker ⛔, Component - C Library, Type - Bug

#4277 - Add configure options for disabling extension features

Pull Request - State: closed - Opened by jhendersonHDF 6 months ago - 2 comments
Labels: Merge - To 1.14, Priority - 0. Blocker ⛔, Component - Build, Type - Improvement

#4269 - Add documentation (H5FD)

Pull Request - State: closed - Opened by bmribler 6 months ago - 2 comments
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - Documentation, Type - Improvement

#4266 - Fix unitialized memory in H5Tconv.c

Pull Request - State: open - Opened by derobins 6 months ago - 9 comments
Labels: Merge - To 1.14, Priority - 1. High 🔼, Component - C Library, Type - Improvement

#4264 - Prevent stack overflows in H5E__push_stack

Pull Request - State: closed - Opened by jhendersonHDF 6 months ago - 1 comment
Labels: Merge - To 1.14, Priority - 1. High 🔼, Component - C Library, Type - Bug

#4263 - Minor fixes after merge of file format security fixes

Pull Request - State: closed - Opened by jhendersonHDF 6 months ago
Labels: Merge - To 1.14, Priority - 3. Low 🔽, Component - C Library, Type - Improvement

#4258 - Change `HDF5_ENABLE_Z_LIB_SUPPORT` to `HDF5_ENABLE_ZLIB_SUPPORT`

Issue - State: open - Opened by hyoklee 6 months ago
Labels: Priority - 3. Low 🔽, Component - Build, Type - Improvement

#4218 - Fix problems with background buffers and array datatypes

Pull Request - State: closed - Opened by fortnern 6 months ago - 1 comment
Labels: Merge - To 1.14

#4216 - Getting fill values when reading from external dataset

Issue - State: open - Opened by ajelenak 6 months ago
Labels: Priority - 1. High 🔼, Component - C Library, Type - Bug

#4175 - Add RELEASE.txt note for compound conversion segfault fix

Pull Request - State: closed - Opened by mattjala 7 months ago
Labels: Priority - 2. Medium ⏹, Component - Documentation, Type - Task, Branch - 1.14

#4174 - Add MINGW64 Cross-compilation Action

Pull Request - State: open - Opened by hyoklee 7 months ago - 2 comments
Labels: Component - Tools, Component - Testing, Component - Build

#4147 - Fix buffer size calculation in the deflate filter

Pull Request - State: closed - Opened by skosukhin 7 months ago - 2 comments
Labels: Merge - To 1.14, Priority - 1. High 🔼, Component - C Library, Type - Bug

#4135 - Skip vlen IO API test for cache VOL

Pull Request - State: closed - Opened by mattjala 7 months ago - 3 comments
Labels: Merge - To 1.14, Priority - 0. Blocker ⛔, Component - Testing, Type - Bug

#4134 - h5diff fails comparing references

Issue - State: open - Opened by byrnHDF 7 months ago
Labels: Priority - 1. High 🔼, Component - Tools, Type - Bug

#4130 - Fix segfault in vlen io API test

Pull Request - State: closed - Opened by mattjala 7 months ago
Labels: Merge - To 1.14, Priority - 0. Blocker ⛔, Component - Testing, Type - Bug

#4123 - Add Julia GitHub Actions.

Pull Request - State: closed - Opened by hyoklee 7 months ago - 10 comments
Labels: Merge - To 1.14, Priority - 1. High 🔼, Component - Testing, Type - Improvement

#4111 - Stack overflow when parsing corrupt file

Issue - State: open - Opened by tbeu 7 months ago - 5 comments
Labels: Priority - 1. High 🔼, Component - C Library, Type - Bug, UNCONFIRMED

#4079 - Compression library names do not match cacheinit.cmake

Issue - State: open - Opened by jbensabat 7 months ago - 5 comments
Labels: Priority - 2. Medium ⏹, Component - Build, Type - Bug

#4047 - Improve error messages when tools attempt to use non-enabled S3 and HDFS VFDs.

Pull Request - State: closed - Opened by lrknox 7 months ago
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - Tools, Type - Improvement

#4039 - Fix VOL-compatibility issues in External Link API test

Pull Request - State: closed - Opened by mattjala 7 months ago
Labels: Merge - To 1.14, Priority - 3. Low 🔽, Component - C Library, Type - Improvement

#4014 - Add C in project line for CMake to fix #4012.

Pull Request - State: closed - Opened by hyoklee 8 months ago
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - Build, Type - Improvement

#3997 - Fix h5watch test failures to ignore system warnings on ppc64le.

Pull Request - State: closed - Opened by lrknox 8 months ago
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - Tools, Component - High-Level Library, Component - Testing

#3986 - Remove ADB signature from RELEASE.txt.

Pull Request - State: closed - Opened by hyoklee 8 months ago
Labels: Merge - To 1.14, Priority - 3. Low 🔽, Component - Documentation, Type - Deprecation / Removal

#3985 - Enable the subfiling VFD by default

Issue - State: open - Opened by brtnfld 8 months ago
Labels: Priority - 2. Medium ⏹, Component - Parallel, Component - Build, Type - Task

#3980 - Add callable ABI checker workflow GitHub Action.

Pull Request - State: closed - Opened by hyoklee 8 months ago - 2 comments
Labels: Priority - 1. High 🔼, Component - Build, Type - Improvement

#3977 - Compiling user code with intel fortan compiler and "-init=snan" triggers a segmentation fault

Issue - State: open - Opened by pums974 8 months ago - 5 comments
Labels: Priority - 1. High 🔼, Component - C Library, Component - Fortran, Type - Bug

#3915 - CMake: Disable UNITY_BUILD

Pull Request - State: open - Opened by jschueller 9 months ago - 2 comments
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - Build, Type - Improvement

#3911 - icx: warning: -Wl,-s: 'linker' input unused [-Wunused-command-line-argument]

Issue - State: open - Opened by HathewayWill 9 months ago - 2 comments
Labels: Priority - 2. Medium ⏹, Component - Build, Type - Bug

#3881 - Fix dead portal links

Issue - State: open - Opened by gheber 10 months ago - 2 comments
Labels: Priority - 1. High 🔼, Component - Documentation, Type - Improvement

#3878 - Add subfiling for h5dump filedriver option help message

Pull Request - State: closed - Opened by hyoklee 10 months ago
Labels: Priority - 2. Medium ⏹, Component - Tools, Type - Improvement

#3876 - MSYS2 GitHub Action fails for clang64 environment

Issue - State: open - Opened by hyoklee 10 months ago
Labels: Priority - 1. High 🔼, Component - Build, Type - Bug

#3858 - H5Dwrite execution time in Windows increases in subsequent runs when a variable is written with chunking and compression

Issue - State: open - Opened by abhibaruah 11 months ago - 1 comment
Labels: Priority - 1. High 🔼, Component - C Library, Type - Bug, UNCONFIRMED

#3815 - Attributes are not stored in dense storage

Issue - State: open - Opened by radistmorse 11 months ago - 1 comment
Labels: Priority - 1. High 🔼, Component - C Library, Type - Bug

#3803 - Update docs to define what is meant by location identifier.

Issue - State: open - Opened by brtnfld 11 months ago
Labels: Priority - 3. Low 🔽, Component - Documentation, Type - Task

#3798 - Add to testing an MPI compiler that is only 3.0 compliant

Issue - State: open - Opened by brtnfld 11 months ago - 1 comment
Labels: Priority - 1. High 🔼, Component - Parallel, Component - Testing, Type - Task

#3790 - infinite loop closing library

Issue - State: open - Opened by gabe-sherman 11 months ago - 4 comments
Labels: Priority - 1. High 🔼, Component - C Library, Type - Bug, UNCONFIRMED

#3789 - H5VLnative lacks doxygen documentation

Issue - State: open - Opened by brtnfld 11 months ago
Labels: Priority - 2. Medium ⏹, Component - Documentation, Type - Task

#3731 - Graviton flang: error: unknown argument: '-soname'

Issue - State: open - Opened by ashterenli 12 months ago - 6 comments
Labels: Priority - 1. High 🔼, Component - Fortran, Component - Build, Type - Bug

#3730 - t_mpi aborts on Fedora Rawhide with mpich on s390x

Issue - State: open - Opened by opoplawski 12 months ago - 2 comments
Labels: Priority - 1. High 🔼, Component - Parallel, Type - Bug

#3663 - The cmake configuration should provide transitive dependencies (like `shlwapi` on MSVC)

Issue - State: open - Opened by emmenlau 12 months ago - 4 comments
Labels: Priority - 2. Medium ⏹, Component - Build, Type - Bug

#3647 - Add native VOL checks to deprecated functions

Pull Request - State: closed - Opened by mattjala 12 months ago - 2 comments
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - C Library, Type - Bug

#3625 - Throw error in ID iteration for NULL object

Pull Request - State: closed - Opened by mattjala 12 months ago - 1 comment
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - C Library, Type - Bug

#3519 - [1.14 Merge] Support CMake VOL FetchContent builds from local directory

Pull Request - State: closed - Opened by mattjala about 1 year ago
Labels: Priority - 2. Medium ⏹, Component - Build, Type - Improvement, Branch - 1.14

#3474 - [1.14 Merge] Update VOL CMake for REST VOL

Pull Request - State: closed - Opened by mattjala about 1 year ago
Labels: Priority - 2. Medium ⏹, Component - Build, Type - Improvement, Branch - 1.14

#3455 - Support CMake VOL builds with FetchContent from local directory

Pull Request - State: closed - Opened by mattjala about 1 year ago - 1 comment
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - Build, Type - Improvement

#3450 - Update VOL CMake for REST VOL

Pull Request - State: closed - Opened by mattjala about 1 year ago
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - Build, Type - Improvement

#3399 - Error of hdf5 make with ifx and mpi

Issue - State: open - Opened by hurricane642 about 1 year ago

#3398 - Add option to permit Doxygen to not error on warnings

Issue - State: open - Opened by byrnHDF about 1 year ago
Labels: Priority - 1. High 🔼, Component - Documentation, Component - Build, Type - Bug, Type - Improvement

#3397 - arm64-v8a,run ctest,H5TEST-cache_logging run Segmentation fault

Issue - State: open - Opened by albert20081010 about 1 year ago
Labels: Priority - 1. High 🔼, Component - Testing, Type - Task

#3396 - Increase in memory usage when using H5Aread / H5DSget_num_scales in a loop opening and closing files.

Issue - State: open - Opened by planetMDX about 1 year ago
Labels: Priority - 1. High 🔼, Component - C Library, Component - High-Level Library, Type - Bug

#3395 - File creation hanging in MPI.

Issue - State: open - Opened by sunethwarna about 1 year ago
Labels: Priority - 1. High 🔼, Component - C Library, Component - Testing, Type - Task

#3394 - Fix serial to parallel chunked dataset file space allocation bug

Pull Request - State: open - Opened by jhendersonHDF about 1 year ago
Labels: Merge - To 1.14, Priority - 0. Blocker ⛔, Component - C Library, Component - Parallel, Type - Bug

#3393 - Merge/update CMake, presets,java and tools

Pull Request - State: closed - Opened by byrnHDF about 1 year ago
Labels: Priority - 1. High 🔼, Component - Tools, Component - Java, Component - Build, Type - Improvement, Type - Task, Branch - 1.12, Component - Misc

#3392 - Update presets, examples uncompress, szip cache

Pull Request - State: open - Opened by byrnHDF about 1 year ago
Labels: Merge, Priority - 1. High 🔼, Component - Build, Type - Improvement, Branch - 1.14, Component - Misc

#3391 - Update presets, examples uncompress, szip cache

Pull Request - State: closed - Opened by byrnHDF about 1 year ago
Labels: Priority - 1. High 🔼, Component - Build, Type - Improvement, Component - Misc

#3390 - Fix valgrind warning about write of uninitialized bytes in ScaleOffse…

Pull Request - State: closed - Opened by jhendersonHDF about 1 year ago
Labels: Merge - To 1.12, Merge - To 1.10, Merge - To 1.14, Priority - 2. Medium ⏹, Component - C Library, Type - Task

#3389 - Fix valgrind warning about write of uninitialized bytes

Pull Request - State: closed - Opened by jhendersonHDF about 1 year ago
Labels: Merge - To 1.14, Priority - 2. Medium ⏹, Component - C Library, Type - Task

#3388 - Fix compile failures with H5C_DO_MEMORY_SANITY_CHECKS enabled

Pull Request - State: closed - Opened by jhendersonHDF about 1 year ago
Labels: Merge - To 1.14, Priority - 3. Low 🔽, Component - C Library, Type - Task

#3387 - Fix assertion failure during file close on error

Pull Request - State: closed - Opened by jhendersonHDF about 1 year ago
Labels: Merge - To 1.12, Merge - To 1.10, Merge - To 1.14, Priority - 2. Medium ⏹, Component - C Library, Type - Bug

#3386 - Use plugins master with overrides

Pull Request - State: closed - Opened by byrnHDF about 1 year ago
Labels: Merge, Priority - 1. High 🔼, Component - Testing, Component - Build, Type - Improvement, Branch - 1.14

#3385 - restore CI tarball name prefix to match bin/release

Pull Request - State: closed - Opened by byrnHDF about 1 year ago
Labels: Priority - 0. Blocker ⛔, Component - Build, Type - Bug

#3384 - Correct CI settings

Pull Request - State: closed - Opened by byrnHDF about 1 year ago
Labels: Merge - To 1.12, Merge - To 1.10, Merge - To 1.14, Priority - 0. Blocker ⛔, Component - Build, Type - Bug

#3383 - Clear RELEASE.txt and copy 1.14.2 RELEASE.txt to HISTORY-1.14.txt after

Pull Request - State: closed - Opened by lrknox about 1 year ago
Labels: Component - Documentation, Branch - 1.14

#3382 - Allow page buffer cache setting for non-PAGE HDF5 file open

Issue - State: closed - Opened by ajelenak about 1 year ago
Labels: Priority - 2. Medium ⏹, Component - C Library, Type - Improvement

#3381 - Reduce number of S3 requests on file open in ros3 VFD

Issue - State: open - Opened by ajelenak about 1 year ago
Labels: Priority - 2. Medium ⏹, Component - C Library, Type - Improvement

#3380 - Update release - fix bug and update date

Pull Request - State: closed - Opened by lrknox about 1 year ago

#3379 - Update release date

Pull Request - State: closed - Opened by lrknox about 1 year ago - 1 comment

#3378 - Correct cmake script

Pull Request - State: closed - Opened by byrnHDF about 1 year ago
Labels: Merge, Priority - 0. Blocker ⛔, Type - Bug, Branch - 1.14, Component - Misc

#3377 - Correct script

Pull Request - State: closed - Opened by byrnHDF about 1 year ago
Labels: Merge - To 1.12, Merge - To 1.10, Merge - To 1.14, Priority - 0. Blocker ⛔, Type - Bug, Component - Misc

#3376 - Fix possible performance regression introduced with in-place type conversion in 1.14.2

Pull Request - State: closed - Opened by fortnern about 1 year ago - 5 comments

#3375 - Update platforms tested

Pull Request - State: closed - Opened by lrknox about 1 year ago

#3374 - Add RELEASE.txt notes for recent selection I/O work.

Pull Request - State: closed - Opened by fortnern about 1 year ago

#3373 - Fix Use-of-uninitialized-value in H5FD__sec2_write

Pull Request - State: open - Opened by sashashura about 1 year ago
Labels: Merge - To 1.12, Merge - To 1.10, Merge - To 1.14, Priority - 1. High 🔼, Component - C Library, Type - Bug

#3372 - Use-of-uninitialized-value in H5FD__sec2_write

Issue - State: open - Opened by sashashura about 1 year ago
Labels: Priority - 1. High 🔼, Component - C Library, Type - Bug

#3371 - Add a 1.14.3 column to the CVE matrix

Pull Request - State: closed - Opened by derobins about 1 year ago
Labels: Priority - 0. Blocker ⛔, Component - Documentation, Type - Improvement, Branch - 1.14

#3370 - Add CVE matrix

Pull Request - State: closed - Opened by derobins about 1 year ago
Labels: Priority - 0. Blocker ⛔, Component - Documentation, Type - New Feature, Branch - 1.14

#3369 - Add the 1.14 CVE matrix file

Pull Request - State: closed - Opened by derobins about 1 year ago
Labels: Priority - 0. Blocker ⛔, Component - Documentation, Type - New Feature, Branch - 1.14

#3368 - Fix Heap-buffer-overflow WRITE in H5MM_memcpy

Pull Request - State: open - Opened by sashashura about 1 year ago - 2 comments
Labels: Merge - To 1.12, Merge - To 1.10, Merge - To 1.14, Priority - 1. High 🔼, Component - C Library, Type - Bug

#3367 - Out of bounds write in H5O__alloc_chunk

Issue - State: open - Opened by sashashura about 1 year ago
Labels: Priority - 1. High 🔼, Component - C Library, Type - Bug

#3366 - Merges from 1.14 Aug 4-9

Pull Request - State: closed - Opened by lrknox about 1 year ago
Labels: Priority - 0. Blocker ⛔, Component - C Library, Component - Parallel, Component - Testing, Component - Build

#3365 - set H5_PAC_C_MAX_REAL_PRECISION default to 0 when cross compiling with

Pull Request - State: closed - Opened by lrknox about 1 year ago
Labels: Priority - 0. Blocker ⛔, Component - Build, Branch - 1.14

#3364 - set H5_PAC_C_MAX_REAL_PRECISION default to 0 when cross compiling with

Pull Request - State: closed - Opened by lrknox about 1 year ago
Labels: Merge - To 1.12, Merge - To 1.10, Merge - To 1.14, Priority - 0. Blocker ⛔, Component - Build

#3363 - Suggest Adoption of Scorecard GitHub Action

Issue - State: open - Opened by diogoteles08 about 1 year ago - 1 comment

#3362 - Work around a testphdf5 failure on Cray MPICH machines (#3361)

Pull Request - State: closed - Opened by lrknox about 1 year ago
Labels: Component - Parallel, Component - Testing, Branch - 1.14

#3361 - Work around a testphdf5 failure on Cray MPICH machines

Pull Request - State: closed - Opened by jhendersonHDF about 1 year ago
Labels: Merge - To 1.14, Priority - 1. High 🔼, Component - Testing, Type - Bug

#3360 - Merge Implementation of the mpio driver with selection I/O.

Pull Request - State: closed - Opened by lrknox about 1 year ago - 1 comment
Labels: Component - C Library, Component - Parallel, Branch - 1.14

#3359 - Merge 1 14 post0804

Pull Request - State: closed - Opened by lrknox about 1 year ago
Labels: Priority - 0. Blocker ⛔, Component - C Library, Component - Parallel, Component - Testing, Branch - 1.14

#3358 - Add other types and full type to enum/str/vlen dataformat for structblock[begin/end]

Pull Request - State: open - Opened by byrnHDF about 1 year ago
Labels: Merge, Priority - 3. Low 🔽, Component - Tools, Type - Improvement, Branch - 1.14

#3357 - Hdf5 1 14 dump struct

Pull Request - State: closed - Opened by byrnHDF about 1 year ago
Labels: Merge, Priority - 3. Low 🔽, Component - Tools, Type - Improvement, Type - Deprecation / Removal, Branch - 1.14

#3356 - test(parallel): verify FALSE case

Pull Request - State: closed - Opened by hyoklee about 1 year ago

#3355 - Merge hdf5_1_14 changes 07-29 to 08-04

Pull Request - State: closed - Opened by lrknox about 1 year ago - 1 comment
Labels: Priority - 0. Blocker ⛔, Component - C Library, Component - Tools, Component - Java, Component - Parallel, Component - Build

#3354 - Merges from develop Aug 2-4

Pull Request - State: closed - Opened by lrknox about 1 year ago
Labels: Priority - 0. Blocker ⛔, Component - C Library, Component - Build, Branch - 1.14

#3353 - Add other types and full type to enum/str/vlen dataformat for structblock[begin/end]

Pull Request - State: open - Opened by byrnHDF about 1 year ago - 1 comment
Labels: Priority - 3. Low 🔽, Component - Tools, Type - Improvement

GitHub / HDFGroup/hdf5 issues and pull requests