Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / HBClab/NiBetaSeries issues and pull requests

#344 - ENH+FIX: codespell - config, workflow and typos fixed

Pull Request - State: open - Opened by yarikoptic almost 2 years ago - 2 comments

#343 - TypeError: 'bool' object is not callable - indexer.index_metadata

Issue - State: closed - Opened by eahorwath almost 2 years ago - 1 comment

#342 - Change default space label to None

Issue - State: open - Opened by michaelmack about 3 years ago

#341 - Nibs and regressor clarification question

Issue - State: open - Opened by LilianYou over 3 years ago

#340 - array must not contain infs or NaNs

Issue - State: open - Opened by KMIsenburg almost 4 years ago - 7 comments

#339 - sqlalchemy: unable to open database file

Issue - State: open - Opened by kateiyas almost 4 years ago - 4 comments

#338 - current build is failing

Issue - State: closed - Opened by jdkent almost 4 years ago

#337 - [MAINT] update from xenial to bionic

Pull Request - State: closed - Opened by jdkent almost 4 years ago - 1 comment

#336 - [FIX] keep bibtex below major release 2.0.0

Pull Request - State: closed - Opened by jdkent about 4 years ago - 1 comment

#335 - docs not building

Issue - State: closed - Opened by jdkent about 4 years ago

#334 - Issues running NiBetaSeries with Singularity

Issue - State: open - Opened by Tsjitsjikow about 4 years ago - 5 comments

#333 - [MNT] fix sklearn installation in py3.8

Pull Request - State: closed - Opened by jdkent about 4 years ago - 1 comment

#332 - sklearn 0.19.x not installing when using python 3.8

Issue - State: closed - Opened by jdkent about 4 years ago

#331 - [MAINT/REF] wholesale changes for updating dependencies and ci

Pull Request - State: closed - Opened by jdkent over 4 years ago - 1 comment
Labels: hacktoberfest-accepted

#330 - [MAINT/DOC] change python version to 3.6 to build docs

Pull Request - State: closed - Opened by jdkent over 4 years ago - 1 comment

#329 - DOC build broken

Issue - State: closed - Opened by jdkent over 4 years ago

#328 - IndexError: list index out of range

Issue - State: open - Opened by LilianYou over 4 years ago - 1 comment

#327 - Misspelling satifies -> satisfies

Issue - State: open - Opened by jdkent over 4 years ago

#326 - What variables to select from the confounder file for betaseries analyses?

Issue - State: closed - Opened by LilianYou over 4 years ago - 4 comments

#325 - How to deal with event files from multiple runs?

Issue - State: closed - Opened by LilianYou over 4 years ago - 2 comments

#323 - Crash File reporting KeyError: 'RepetitionTime'

Issue - State: closed - Opened by mbpincus over 4 years ago - 3 comments

#322 - update examples in documentation

Issue - State: closed - Opened by jdkent over 4 years ago - 1 comment

#321 - Error: dataset_description.json.

Issue - State: closed - Opened by limbicode214 over 4 years ago - 10 comments

#320 - [FIX] make the crashdump directory the same directory as outputs

Pull Request - State: closed - Opened by jdkent over 4 years ago - 1 comment

#319 - Crash file generated and no data in the nibetaseries folder

Issue - State: closed - Opened by LilianYou over 4 years ago - 11 comments

#318 - Can nibetaseries run multiple sessions simultaneously?

Issue - State: closed - Opened by LilianYou over 4 years ago - 2 comments

#317 - cannot pull nibetaseries

Issue - State: closed - Opened by limbicode214 over 4 years ago - 2 comments

#316 - Question about trial_type

Issue - State: closed - Opened by mbpincus almost 5 years ago - 4 comments

#315 - Error about Directory Not Being Available

Issue - State: closed - Opened by mbpincus almost 5 years ago - 2 comments

#314 - Change smoothing default

Pull Request - State: closed - Opened by PeerHerholz almost 5 years ago - 1 comment
Labels: enhancement, help wanted

#312 - Remove highly co-linear (or equivalent confounds)

Issue - State: open - Opened by jdkent almost 5 years ago

#311 - Censoring incorrect trials and volumes with outliers

Issue - State: closed - Opened by mbpincus almost 5 years ago - 4 comments

#310 - Validation/Raise informative error for `_regressors.tsv`

Issue - State: open - Opened by jdkent almost 5 years ago

#309 - Report Number of Censored Volumes

Issue - State: open - Opened by jdkent almost 5 years ago

#308 - Fast Implementation of LSS

Issue - State: open - Opened by jdkent almost 5 years ago
Labels: help wanted

#307 - Revisit Calculation of T-stat when using temporal/dispersion

Issue - State: open - Opened by jdkent almost 5 years ago

#306 - [REL] v0.6.0rc1

Pull Request - State: closed - Opened by jdkent almost 5 years ago

#305 - [MAINT] update travis badge and pin sphinx

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#304 - [ENH] add --return-residuals

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#303 - Error with dataset_description.json

Issue - State: closed - Opened by mbpincus almost 5 years ago - 14 comments

#302 - [REL] v0.5.0rc2

Pull Request - State: closed - Opened by jdkent almost 5 years ago

#301 - [REL] v0.5.0rc1

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 3 comments

#300 - connect residuals to output

Issue - State: closed - Opened by jdkent almost 5 years ago

#299 - [ENH] add --normalize-betas option

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 2 comments

#298 - [ENH] add --no-signal-scaling option

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#297 - Option to not scale voxel timeseries

Issue - State: closed - Opened by jdkent almost 5 years ago

#296 - [ENH,FIX] optimally combine temporal + dispersion derivatives for beta estimation

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#295 - Properly handle temporal and dispersion derivatives

Issue - State: closed - Opened by jdkent almost 5 years ago

#294 - [ENH] add residuals to LSS/LSA interfaces

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#293 - add residuals to LSA/LSS interface

Issue - State: closed - Opened by jdkent almost 5 years ago

#292 - [FIX] remove standardize parameter

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#291 - remove standardize in LSS/LSA interfaces

Issue - State: closed - Opened by jdkent almost 5 years ago

#290 - allow users to pass nibabel objects to nistats interfaces

Issue - State: closed - Opened by jdkent almost 5 years ago

#289 - [ENH] Allow niftiimage input

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#288 - fix singularity install instructions in docs

Pull Request - State: closed - Opened by PeerHerholz almost 5 years ago - 1 comment

#287 - Singularity build instructions wrong in docs

Issue - State: closed - Opened by PeerHerholz almost 5 years ago - 2 comments
Labels: bug, enhancement, good first issue

#286 - invalid values detected in nilearn interface

Issue - State: open - Opened by jdkent almost 5 years ago

#285 - Divide correlations by standard deviation

Issue - State: open - Opened by jdkent almost 5 years ago

#284 - [REL] v0.4.3rc1

Pull Request - State: closed - Opened by jdkent almost 5 years ago

#283 - [FIX] allow atlas arguments to be None

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#282 - Trouble getting singularity image to work

Issue - State: closed - Opened by sjw42 almost 5 years ago - 5 comments

#281 - Output normalized betaseries

Issue - State: closed - Opened by michaelmack almost 5 years ago - 3 comments

#280 - [FIX] bump nipype version

Pull Request - State: closed - Opened by jdkent almost 5 years ago

#279 - New version of Traits Released

Issue - State: closed - Opened by jdkent almost 5 years ago

#278 - Let users pass a table of coordinates instead of an atlas file

Issue - State: open - Opened by jdkent almost 5 years ago
Labels: enhancement, feature

#277 - [ENH] censor invalid volumes

Pull Request - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#276 - remove artefactual volumes

Issue - State: closed - Opened by jdkent almost 5 years ago

#275 - select other columns in events.tsv as regressors

Issue - State: open - Opened by jdkent about 5 years ago

#274 - run participants with different number of `motion_outliers`

Issue - State: closed - Opened by jdkent about 5 years ago

#273 - [ENH] allow regex for confound specification and impute derivatives

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#272 - [REL] v0.4.2rc1

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#271 - [FIX] Better error message for missing files

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#270 - [DOC] emphasize beta map analysis

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#269 - [FIX] allow other spaces

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#268 - Allow other spaces than 'MNI152NLin2009cAsym'

Issue - State: closed - Opened by jdkent about 5 years ago

#267 - Use only subset of regions within an atlas

Issue - State: open - Opened by PeerHerholz about 5 years ago - 2 comments
Labels: enhancement, help wanted, question, feature

#266 - Implement 2nd level

Issue - State: open - Opened by PeerHerholz about 5 years ago
Labels: enhancement, help wanted, question, feature

#265 - Usage of `NiBetaSeries` without `fMRIPrep` outputs

Issue - State: open - Opened by PeerHerholz about 5 years ago - 2 comments
Labels: enhancement, help wanted, question, feature

#264 - Separate parcel extraction from correlation workflow

Issue - State: open - Opened by poldrack about 5 years ago - 1 comment

#263 - document use case: only want to return/use the beta maps

Issue - State: closed - Opened by jdkent about 5 years ago
Labels: documentation

#262 - [FIX] less strict beta map generation

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#261 - WARNING: At least 3 trials are needed for a beta series

Issue - State: closed - Opened by jdkent about 5 years ago
Labels: bug

#260 - update confound names in docs/example to be in line with derivatives spec

Issue - State: open - Opened by jdkent about 5 years ago - 1 comment
Labels: bug, documentation

#259 - start testing python 3.8

Issue - State: open - Opened by jdkent about 5 years ago
Labels: enhancement

#258 - `--participant-label sub-01` does not work

Issue - State: closed - Opened by jdkent about 5 years ago
Labels: bug

#257 - [MAINT] add python3.8 to testing matrix

Pull Request - State: open - Opened by jdkent about 5 years ago - 1 comment

#256 - [FIX] allow "sub-" prefix

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#255 - [ENH] handle all confound NaNs

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#254 - how to handle NaNs in confounds?

Issue - State: closed - Opened by jdkent about 5 years ago - 7 comments
Labels: enhancement, help wanted, question

#253 - [ENH] improve bids indexing

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#252 - improve pybids indexing speed

Issue - State: closed - Opened by jdkent about 5 years ago
Labels: enhancement

#251 - further features for boilerplates

Issue - State: open - Opened by PeerHerholz about 5 years ago - 2 comments
Labels: enhancement, help wanted, question, feature, documentation

#250 - [REL] v0.4.1rc1

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#249 - [MAINT] refactor and increase tests for run.py

Pull Request - State: closed - Opened by jdkent about 5 years ago - 1 comment

#248 - inadequate validation of derivatives directory and files

Issue - State: closed - Opened by jdkent about 5 years ago

#241 - 2019 Society for Neuroscience Poster

Issue - State: closed - Opened by jdkent over 5 years ago - 2 comments

#226 - limit Finite Impulse Response (FIR) delays

Issue - State: open - Opened by jdkent over 5 years ago - 2 comments

#214 - singularity pull instructions incorrect

Issue - State: closed - Opened by jdkent over 5 years ago - 7 comments
Labels: bug, good first issue, documentation, Hacktoberfest