Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / GreenleafLab/NucleoATAC issues and pull requests
#97 - pyatac ins output returning all zero values
Issue -
State: open - Opened by NatashaJansz about 3 years ago
#96 - Python 3 compatibility
Pull Request -
State: open - Opened by AliciaSchep over 3 years ago
- 1 comment
#95 - Port to Python 3 and pure python
Pull Request -
State: closed - Opened by oaxiom over 3 years ago
- 4 comments
#94 - nucleosome positioning question
Issue -
State: open - Opened by juechenyang over 3 years ago
#93 - Errors
Issue -
State: closed - Opened by juechenyang almost 4 years ago
- 1 comment
#92 - Normalization and Differential peaks (Fig 5A, 5D)
Issue -
State: open - Opened by monnieb92 almost 4 years ago
- 1 comment
#91 - Question about the use of NucleoATAC.
Issue -
State: open - Opened by chesterlee7246 about 4 years ago
#90 - Error in installation
Issue -
State: open - Opened by pb016 about 4 years ago
#89 - maintainence and porting
Issue -
State: open - Opened by shouldsee about 4 years ago
#88 - Interpreting NucleoATAC Output
Issue -
State: open - Opened by StevenWingett almost 5 years ago
#87 - Interpreting *.nucmap_combined.bed.gz file and downstream analyses
Issue -
State: open - Opened by obwan74 about 5 years ago
#86 - question about Supplementary Figure 18 in NucleoATAC paper
Issue -
State: open - Opened by skye-12138 about 5 years ago
#85 - error with module nfr
Issue -
State: closed - Opened by LuccaZhao over 5 years ago
- 2 comments
#83 - Understanding Nucleoatac outputs and Figure 7a from paper
Issue -
State: open - Opened by Flope over 5 years ago
- 1 comment
#82 - list index out of range
Issue -
State: closed - Opened by michaelwillcockson almost 6 years ago
- 1 comment
#81 - Broad vs narrow peaks for NucleoATAC
Issue -
State: closed - Opened by mbaddoo almost 6 years ago
- 4 comments
#80 - interpreting occupancy begraph file
Issue -
State: closed - Opened by mbaddoo almost 6 years ago
- 2 comments
#79 - Pygments versions 0.3.4
Issue -
State: open - Opened by freshlearner about 6 years ago
#78 - Seperate Chromosome?
Issue -
State: closed - Opened by hmyh1202 over 6 years ago
- 5 comments
#77 - nucleoatac occ requires FASTA?
Issue -
State: open - Opened by vreuter over 6 years ago
- 1 comment
#76 - nucleoatac run
Issue -
State: closed - Opened by hmyh1202 over 6 years ago
- 1 comment
#75 - how to interpret V-plot
Issue -
State: open - Opened by wanluliu over 6 years ago
- 2 comments
#74 - Cython compilation errors, 'CompileError: command 'gcc' failed with exit status 1\n'
Issue -
State: open - Opened by evanbiederstedt over 6 years ago
- 4 comments
#73 - Python3.x support?
Issue -
State: closed - Opened by evanbiederstedt over 6 years ago
- 5 comments
#72 - Narrow/Broad peaks for NucleoATAC
Issue -
State: closed - Opened by jma1991 over 6 years ago
- 2 comments
#71 - NucleoATAC ran out of memory
Issue -
State: open - Opened by bliu100 over 6 years ago
#70 - `nucpos` files are empty
Issue -
State: open - Opened by sameet over 6 years ago
- 2 comments
#69 - biological interpretation of occupancy tracks
Issue -
State: closed - Opened by bhatis2 over 6 years ago
- 1 comment
#68 - Interpreting output
Issue -
State: closed - Opened by pranithavangala over 6 years ago
- 1 comment
#67 - nucleoatac not running
Issue -
State: open - Opened by da-bar over 6 years ago
#66 - TypeError: 'int' object has no attribute '__getitem__'
Issue -
State: closed - Opened by sudarshanchari almost 7 years ago
- 8 comments
#65 - Tag for latest version (v3.4?)
Issue -
State: closed - Opened by lparsons almost 7 years ago
- 1 comment
#64 - fatal error: 'numpy/arrayobject.h' file not found
Issue -
State: open - Opened by kesteph almost 7 years ago
- 5 comments
#63 - are these results sensible?
Issue -
State: open - Opened by avilella about 7 years ago
- 3 comments
#62 - Incorrect Model Fit
Issue -
State: open - Opened by mmilevskiy about 7 years ago
- 5 comments
#61 - Figures 5B, C and D
Issue -
State: closed - Opened by naiarabediaga about 7 years ago
- 3 comments
#60 - NFR output of nucleoatac
Issue -
State: closed - Opened by Flomass about 7 years ago
- 4 comments
#59 - what's the bedtools slop -b size?
Issue -
State: closed - Opened by crazyhottommy about 7 years ago
- 2 comments
#58 - shifting reads bam for NucleoATAC?
Issue -
State: closed - Opened by crazyhottommy about 7 years ago
- 3 comments
#57 - RuntimeWarning: invalid value encountered in sqrt
Issue -
State: open - Opened by ghost about 7 years ago
- 1 comment
#56 - Can I run nucleoatac with a consensus peak file?
Issue -
State: closed - Opened by ghost about 7 years ago
- 2 comments
#55 - higher resolution nucpos.bed.gz is empty
Issue -
State: open - Opened by igordot over 7 years ago
- 30 comments
#54 - question about occ_track
Issue -
State: closed - Opened by duyphamuab over 7 years ago
- 2 comments
#53 - Error compiling Cython file
Issue -
State: closed - Opened by IanCodes over 7 years ago
- 5 comments
#52 - RuntimeWarning: overflow encountered in power
Issue -
State: open - Opened by mfas7 over 7 years ago
- 1 comment
#51 - Insertion sites plot around TSS
Issue -
State: closed - Opened by krouskas over 7 years ago
- 3 comments
#50 - Requirements
Issue -
State: closed - Opened by saschi over 7 years ago
- 1 comment
#49 - BAM file for fragment sizes distribution plot
Issue -
State: closed - Opened by krouskas over 7 years ago
- 1 comment
#48 - ValueError with NucleoATAC
Issue -
State: closed - Opened by Scubatuba99 over 7 years ago
- 2 comments
#47 - PWM descriptor file
Issue -
State: closed - Opened by igordot almost 8 years ago
- 1 comment
#46 - extending regions
Issue -
State: closed - Opened by igordot almost 8 years ago
- 1 comment
#45 - Profile plot using NucleoATAC around peak centers
Issue -
State: closed - Opened by sudhirthakurela almost 8 years ago
- 1 comment
#44 - Occupancy plot: observed and fitted occupancy differ
Issue -
State: closed - Opened by ShaluJhanwar almost 8 years ago
- 2 comments
#43 - Optimizing run time
Issue -
State: closed - Opened by will-NYGC almost 8 years ago
- 3 comments
#42 - Best way to normalize outputs for comparisons between conditions ?
Issue -
State: closed - Opened by PFRoux almost 8 years ago
- 1 comment
#41 - nucleoATAC applied to MNase
Issue -
State: closed - Opened by uschwartz almost 8 years ago
- 4 comments
#40 - Plots for Figure 4 E
Issue -
State: closed - Opened by khayer almost 8 years ago
- 1 comment
#39 - Insertions and coverage tracks
Issue -
State: closed - Opened by DoaneAS about 8 years ago
- 4 comments
#38 - nucleoatac .nucpos.bed problem
Issue -
State: closed - Opened by danimschwartz about 8 years ago
- 5 comments
#37 - RuntimeWarnings and ValueErrors
Issue -
State: closed - Opened by msuperd1 about 8 years ago
- 1 comment
#36 - Input bam and bed
Issue -
State: closed - Opened by josegarciamanteiga about 8 years ago
- 3 comments
#35 - Combining replicates
Issue -
State: closed - Opened by PFRoux about 8 years ago
- 4 comments
#34 - very slow nucleoatac run
Issue -
State: closed - Opened by kenkclam over 8 years ago
- 2 comments
#33 - error in nucleoatac run
Issue -
State: closed - Opened by yanbianqu over 8 years ago
- 2 comments
#32 - Step 1 Value Error
Issue -
State: closed - Opened by harveyza over 8 years ago
- 2 comments
#31 - Plots of paper Figure 1c
Issue -
State: closed - Opened by antgomo over 8 years ago
- 1 comment
#30 - ValueError: invalid reference
Issue -
State: closed - Opened by OscarBrock over 8 years ago
- 3 comments
#29 - NucleoATAC on a whole genome
Issue -
State: closed - Opened by PFRoux over 8 years ago
- 2 comments
#28 - PWM descriptor file for Mouse
Issue -
State: closed - Opened by ahorvath over 8 years ago
- 4 comments
#27 - Problems running example
Issue -
State: closed - Opened by antgomo over 8 years ago
- 1 comment
#26 - Mapped reads on Nucleosomes
Issue -
State: closed - Opened by ShaluJhanwar over 8 years ago
- 1 comment
#25 - IndexError: arrays used as indices must be of integer (or boolean) type
Issue -
State: closed - Opened by ShaluJhanwar over 8 years ago
- 7 comments
#24 - Regarding PWM Mouse Genome
Issue -
State: closed - Opened by ShaluJhanwar over 8 years ago
- 1 comment
#23 - Runtime Error
Issue -
State: closed - Opened by OscarBrock over 8 years ago
- 10 comments
#22 - Gamma
Pull Request -
State: closed - Opened by AliciaSchep over 8 years ago
#21 - Overflow error
Issue -
State: closed - Opened by OscarBrock over 8 years ago
- 3 comments
#20 - nucleoATAC Invalid Region error
Issue -
State: closed - Opened by OscarBrock over 8 years ago
- 5 comments
#19 - test data set
Issue -
State: closed - Opened by EricDeveaud over 8 years ago
- 2 comments
#18 - How looks like a good NFR profile ?
Issue -
State: closed - Opened by PFRoux over 8 years ago
- 7 comments
#17 - Question about vprocess for mammalian data
Issue -
State: closed - Opened by Angrydutchman over 8 years ago
- 1 comment
#16 - Step 1 parameter optimization failure
Issue -
State: closed - Opened by emilliman5 over 8 years ago
- 7 comments
#15 - nucleoatac nfr problem
Issue -
State: closed - Opened by will-NYGC over 8 years ago
- 4 comments
#14 - --not_atac definition clarification?
Issue -
State: closed - Opened by msg63 almost 9 years ago
- 1 comment
#13 - Can't get nucleoatac to run
Issue -
State: closed - Opened by Angrydutchman almost 9 years ago
- 2 comments
#12 - Problem running NucleoAtac
Issue -
State: closed - Opened by kesteph almost 9 years ago
- 3 comments
#11 - chromsome discrepancy
Issue -
State: closed - Opened by davek44 almost 9 years ago
- 1 comment
#10 - pyatac pwm: OverflowError: can't convert negative value to unsigned int
Issue -
State: closed - Opened by jebard almost 9 years ago
- 2 comments
#9 - nucleoatac crashing after running partially
Issue -
State: closed - Opened by laulabbrandeis almost 9 years ago
- 3 comments
#8 - NucleoATAC installation
Issue -
State: closed - Opened by srogue50 almost 9 years ago
- 4 comments
#7 - question about output files
Issue -
State: closed - Opened by duyphamuab almost 9 years ago
- 4 comments
#6 - Relative paths are not handeled correctly
Issue -
State: closed - Opened by balwierz about 9 years ago
- 1 comment
#5 - Issue4
Pull Request -
State: closed - Opened by AliciaSchep about 9 years ago
#4 - Problem building pyatac.fragments
Issue -
State: closed - Opened by cdeboever3 about 9 years ago
- 3 comments
#3 - Problem running
Issue -
State: open - Opened by lopatica about 9 years ago
- 6 comments
#2 - changed setup
Pull Request -
State: closed - Opened by AliciaSchep over 9 years ago
#1 - Reorganization of code. Addition of new pyatac command-line utility. R...
Pull Request -
State: closed - Opened by AliciaSchep over 9 years ago