Ecosyste.ms: Issues

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GitHub / GiadaLalli/ISN-tractor issues and pull requests

#47 - Prepare for 0.3.0 release

Pull Request - State: closed - Opened by MaybeJustJames 3 months ago

#46 - Improve metric performance by not executing Python

Pull Request - State: closed - Opened by MaybeJustJames 3 months ago

#45 - Biweight midcorrelation metric

Pull Request - State: closed - Opened by MaybeJustJames 3 months ago

#43 - Update README.md

Pull Request - State: closed - Opened by FedericoMelograna 12 months ago

#42 - Filtration curve - updated

Pull Request - State: closed - Opened by FedericoMelograna about 1 year ago - 2 comments

#41 - Filtration curves

Pull Request - State: closed - Opened by FedericoMelograna about 1 year ago - 3 comments

#40 - Filtration curves

Pull Request - State: closed - Opened by FedericoMelograna about 1 year ago

#39 - Make sparse_isn call dense_isn when using incremental_pearson

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#38 - add Filtration Curve for visualization

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago - 3 comments

#37 - Improve the performance (memory and CPU) of `dense_isn()`

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#36 - Benchmarking and profiling

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#35 - adding incremental_pearson first draft

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago

#34 - Add a test and fix bugs in dense_isn

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#33 - Benchmark

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago - 1 comment

#32 - Readthedocs

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago

#31 - Export public interface through `__init__.py`

Issue - State: open - Opened by MaybeJustJames over 1 year ago

#30 - Add an optional pyTorch `device` parameter to isn() functions

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago - 2 comments

#29 - we regret:

Issue - State: closed - Opened by GiadaLalli over 1 year ago - 2 comments
Labels: bug

#28 - Add poetry and package caches to speed up CI time

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago - 1 comment

#27 - Unify isn() function interface for SNPs and for Genes

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago - 7 comments

#26 - `mutual_info` metric on continuous `gene_data`

Issue - State: closed - Opened by MaybeJustJames over 1 year ago - 2 comments

#25 - Update dependencies

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#24 - Add a gitignore file

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#23 - Input dataframe validation

Issue - State: open - Opened by MaybeJustJames over 1 year ago

#22 - Initial implementation of testing

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago - 3 comments

#21 - Oop

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago - 2 comments

#19 - Remove `LD` metric because it is not relevent for genes (but for SNPs)

Issue - State: closed - Opened by MaybeJustJames over 1 year ago - 3 comments

#18 - `positional_mapping` should be private

Issue - State: open - Opened by MaybeJustJames over 1 year ago

#17 - Code examples

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago - 2 comments

#16 - [PART 2] General cleanup

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#15 - [PART 1] The impute function could accept a function to replace missing data

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago - 1 comment

#14 - added functions for gene expression

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago - 2 comments

#13 - Bumping major version because of #11

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#12 - Add a changelog with current status of the project

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#11 - "Adding metric"

Pull Request - State: closed - Opened by GiadaLalli over 1 year ago

#10 - Re-enable Github releases in the release action

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#9 - Add repository to pyproject for publication

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#8 - Add a release workflow

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#7 - Renamed package to isn-tractor

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#6 - Create a LICENSE file

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#5 - Add some code quality checks for pull requests

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#4 - Make Pylint happy

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#3 - Ib-ISN functions should take daraframe parameters

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago

#2 - PyLint output

Issue - State: closed - Opened by MaybeJustJames over 1 year ago - 1 comment

#1 - Re-organise the module for packaging using Poetry

Pull Request - State: closed - Opened by MaybeJustJames over 1 year ago