Ecosyste.ms: Issues

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GitHub / Georgetown-IR-Lab/QuickUMLS issues and pull requests

#99 - Use plyvel for the leveldb backend

Pull Request - State: open - Opened by ghisvail 4 months ago

#98 - Unable to install on Python 3.12 due to leveldb

Issue - State: open - Opened by ghisvail 4 months ago

#97 - Numpy Dependency is Broken; Needs Updating to Explicitly Disallow v2

Issue - State: closed - Opened by GChampagne1 4 months ago - 7 comments

#96 - [BUG] QuickUMLS install fails

Issue - State: closed - Opened by rmalla1 8 months ago - 1 comment

#95 - Installation Process Killed

Issue - State: open - Opened by skyrockets-21 9 months ago

#93 - fix import error: cannot import name 'MEDSPACY_DEFAULT_SPAN_GROUP_NAME'

Pull Request - State: closed - Opened by ivcvy about 1 year ago - 1 comment

#92 - Google colab support

Issue - State: open - Opened by AzzedineAftiss over 1 year ago - 1 comment

#90 - license url not valid

Issue - State: open - Opened by qianc62 over 1 year ago

#89 - SNOMED Vocab only?

Issue - State: open - Opened by serenayj about 2 years ago - 1 comment

#88 - Solve nested entities problems by using SpanCategorizer

Pull Request - State: open - Opened by hungvo304ml about 2 years ago

#87 - Exception in thread "main" java.lang.NoClassDefFoundError

Issue - State: closed - Opened by samlexrod over 2 years ago - 2 comments

#86 - [BUG] SSLError workarounds?

Issue - State: open - Opened by DSLituiev over 2 years ago - 3 comments

#85 - Unable to return match for chron's disease

Issue - State: closed - Opened by dimitri-kaid over 2 years ago - 1 comment

#84 - install quickUMLS

Issue - State: open - Opened by om35 over 2 years ago - 4 comments

#83 - [BUG]Dependency conflicts of QuickUMLS install

Issue - State: open - Opened by bearnomore over 2 years ago - 1 comment

#81 - [BUG] latest version is not up-to-date

Issue - State: open - Opened by I-Akrout almost 3 years ago

#80 - Add six to requirements.txt

Pull Request - State: closed - Opened by galtay almost 3 years ago

#79 - about `nlp.add_pipe` in the demo

Issue - State: open - Opened by newbietuan almost 3 years ago - 6 comments

#78 - CUI to ICD-10 code

Issue - State: open - Opened by bokstaller about 3 years ago

#77 - [TIP] 2x speed improvement with one changed line

Issue - State: open - Opened by ldorigo about 3 years ago

#76 - Install problem

Issue - State: open - Opened by xiaoshuang0918 about 3 years ago

#75 - fixes #74

Pull Request - State: open - Opened by akleinau about 3 years ago - 1 comment

#74 - [BUG] best_match and ignore_syntax arguments are ignored

Issue - State: open - Opened by akleinau about 3 years ago

#73 - [BUG] Installation Error: Don't know how to compile leveldb for Windows!

Issue - State: open - Opened by gohjiayi over 3 years ago - 2 comments

#72 - fixed spacy language map issue

Pull Request - State: closed - Opened by McClain98 over 3 years ago - 4 comments

#71 - Problem installing quickumls on Windows

Issue - State: closed - Opened by RonWilkinson over 3 years ago - 2 comments

#70 - INSTALL problem

Issue - State: open - Opened by ranum over 3 years ago - 4 comments

#68 - [BUG] QuickUMLS initialization spacy.load error in Spacy 3.0

Issue - State: open - Opened by pokarats almost 4 years ago - 1 comment

#67 - Reducing RAM footprint + Adding preferred term output

Pull Request - State: open - Opened by fschlatt almost 4 years ago - 3 comments

#66 - [BUG] error about "pip install quickumls"

Issue - State: closed - Opened by JiangChao52 almost 4 years ago - 1 comment

#65 - __init__() got an unexpected keyword argument 'spacy_component'

Issue - State: open - Opened by eunsuk-c almost 4 years ago - 7 comments

#64 - Installing takes too much memory

Issue - State: open - Opened by fschlatt about 4 years ago - 8 comments

#63 - [BUG] Issue with installing simstring

Issue - State: open - Opened by kr-hansen about 4 years ago - 1 comment

#62 - Error while installing

Issue - State: open - Opened by vishaldeyiiest about 4 years ago - 7 comments

#61 - Issue 60 spacy entity overlap

Pull Request - State: open - Opened by burgersmoke about 4 years ago - 4 comments

#60 - [BUG] spacy component ValueError: "A token can only be part of one entity"

Issue - State: open - Opened by burgersmoke about 4 years ago - 2 comments

#59 - Display error in cloud instance

Issue - State: closed - Opened by NarenInD over 4 years ago - 1 comment

#58 - Installation failed when disk I/O is slow.[BUG]

Issue - State: open - Opened by createrfang over 4 years ago

#57 - Allow QuickUMLS to be used as component in spacy pipeline

Pull Request - State: closed - Opened by burgersmoke over 4 years ago - 9 comments

#56 - repeated similarity calculations

Issue - State: closed - Opened by bicycleman15 over 4 years ago - 1 comment

#55 - QuickUMLS v.1.4

Pull Request - State: closed - Opened by soldni over 4 years ago

#54 - Any suggestions on how to scale QuickUMLS?

Issue - State: closed - Opened by svjan5 over 4 years ago - 5 comments
Labels: enhancement

#53 - Getting definitions and synonyms for the resulting cui

Issue - State: closed - Opened by vegetakarthhik almost 5 years ago - 1 comment
Labels: wontfix

#52 - "Fluorouracil" cause KeyError on 1.3

Issue - State: closed - Opened by bevankoopman about 5 years ago - 3 comments
Labels: bug

#51 - installation problem on windows 10

Issue - State: open - Opened by yancylo about 5 years ago - 1 comment
Labels: help wanted

#50 - does not handle Negated lines

Issue - State: closed - Opened by shjb16 over 5 years ago - 3 comments

#49 - Is it possible to add option to choose sources?

Issue - State: closed - Opened by erotavlas over 5 years ago - 2 comments

#48 - Add option to disable lowercase conversion of all uppercase words.

Pull Request - State: closed - Opened by sandertan over 5 years ago - 2 comments

#47 - Added support for pip install

Pull Request - State: closed - Opened by soldni over 5 years ago

#46 - How to connect to the server from HTML/web applicaton

Issue - State: closed - Opened by aganapa over 5 years ago - 1 comment
Labels: question

#45 - get_similarity issue with overlap

Issue - State: closed - Opened by GregSilverman over 5 years ago - 2 comments
Labels: help wanted

#44 - Quickumls not working on Windows

Issue - State: closed - Opened by shjb16 over 5 years ago - 3 comments

#43 - performance issues

Issue - State: closed - Opened by GregSilverman over 5 years ago - 7 comments

#42 - Add a set of available semtypes so users can easily choose the ones they need.

Pull Request - State: closed - Opened by ldorigo over 5 years ago - 3 comments

#41 - Add docstrings to QuickUMLS.py

Pull Request - State: closed - Opened by ldorigo over 5 years ago - 1 comment

#40 - Make this part of a Spacy pipeline

Issue - State: closed - Opened by ldorigo over 5 years ago - 13 comments
Labels: enhancement, help wanted

#39 - Fixing the issue of 'preferred' always being 1

Pull Request - State: closed - Opened by litvinovivan over 5 years ago

#38 - Preferred always 1

Issue - State: closed - Opened by litvinovivan over 5 years ago - 2 comments
Labels: bug

#37 - Division by zero error when ignore_syntax=True

Issue - State: closed - Opened by litvinovivan over 5 years ago - 3 comments
Labels: bug

#36 - Installation in Windows

Issue - State: closed - Opened by litvinovivan over 5 years ago - 3 comments

#34 - Don't know how to compile leveldb for Windows!

Issue - State: closed - Opened by shjb16 almost 6 years ago - 2 comments

#33 - fix for when word is shorter than n

Pull Request - State: closed - Opened by vlsd almost 6 years ago

#32 - make_ngrams returns empty set when n > len(s)

Issue - State: closed - Opened by vlsd almost 6 years ago - 1 comment

#31 - Fix empty final ngram

Pull Request - State: closed - Opened by burgersmoke almost 6 years ago - 2 comments

#30 - KeyError in constants.SPACY_LANGUAGE_MAP[self.language_flag]

Issue - State: closed - Opened by tutubalinaev about 6 years ago - 1 comment

#29 - fixes for issue #28

Pull Request - State: closed - Opened by soldni about 6 years ago

#28 - Divide by zero error

Issue - State: closed - Opened by aditya9211 about 6 years ago - 1 comment
Labels: bug

#27 - 1.2.4

Pull Request - State: closed - Opened by soldni about 6 years ago

#26 - 1.2.4

Pull Request - State: closed - Opened by soldni about 6 years ago

#25 - _select_longest fcn identical to _select_score

Issue - State: closed - Opened by donghyun208 over 6 years ago - 1 comment

#24 - LevelDBError: IO error: ../semtypes.leveldb/000063.ldb: Too many open files

Issue - State: closed - Opened by magicliulei88 over 6 years ago - 1 comment

#23 - Add setup.py file

Pull Request - State: closed - Opened by tiago-ferreiraa over 6 years ago

#22 - Case insensitive mapping not working.

Issue - State: closed - Opened by bevankoopman over 6 years ago - 2 comments
Labels: bug

#21 - LevelDB Error: Too many open files

Issue - State: closed - Opened by khalludi over 6 years ago - 2 comments

#20 - IOError: [Errno 24] Too many open files

Issue - State: closed - Opened by hongjuny over 6 years ago - 1 comment

#19 - -

Issue - State: closed - Opened by chaitanyachuri over 6 years ago

#18 - Feature request: include setup.py

Issue - State: closed - Opened by arnold-jr over 6 years ago - 10 comments
Labels: enhancement

#17 - SemTypes

Issue - State: closed - Opened by aus10powell over 6 years ago - 2 comments

#16 - Resource temporarily unavailable

Issue - State: closed - Opened by jessika0991 over 6 years ago - 1 comment

#15 - fixed error in installation with python 2

Pull Request - State: closed - Opened by soldni over 6 years ago

#14 - Bug in version 1.2.2 using _is_ok_semtype

Issue - State: closed - Opened by slbayer over 6 years ago - 4 comments

#13 - "leucovorin" causes a KeyError

Issue - State: closed - Opened by slbayer almost 7 years ago - 4 comments

#12 - install.py doesn't quite work with Python 2

Issue - State: closed - Opened by slbayer almost 7 years ago - 1 comment
Labels: bug

#11 - Empty Results List

Issue - State: closed - Opened by panushri25 almost 7 years ago - 10 comments

#10 - Command changed for spacy corpus.

Pull Request - State: closed - Opened by the-spectator almost 7 years ago

#9 - threshold parameter

Issue - State: closed - Opened by Gracelek about 7 years ago - 3 comments

#8 - Installation error : simstring

Issue - State: closed - Opened by Gracelek about 7 years ago - 5 comments

#7 - V1.2

Pull Request - State: closed - Opened by soldni over 7 years ago

#6 - fixed issues with macOS

Pull Request - State: closed - Opened by soldni almost 8 years ago

#5 - UMLS Installation

Issue - State: closed - Opened by bwanglzu almost 8 years ago - 1 comment

#4 - Python3 wrapper build fails on OS X

Issue - State: closed - Opened by mlucas-NU almost 8 years ago - 5 comments
Labels: enhancement

#3 - Processing a whole document with QuickUMLS

Issue - State: closed - Opened by bevankoopman over 8 years ago - 1 comment

#2 - negations not defined

Issue - State: closed - Opened by bevankoopman over 8 years ago - 1 comment

#1 - simstring not compiling on OSX

Issue - State: closed - Opened by bevankoopman over 8 years ago - 6 comments