Genometric/MSPC issues and pull requests

#211 - Bump axios, @docusaurus/core, @docusaurus/preset-classic and @docusaurus/theme-search-algolia in /website

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago - 1 comment
Labels: dependencies, javascript

#210 - Bump serve-static and express in /website

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago
Labels: dependencies, javascript

#209 - Bump body-parser and express in /website

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago
Labels: dependencies, javascript

#208 - Bump send and express in /website

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago
Labels: dependencies, javascript

#207 - Bump express from 4.19.2 to 4.21.0 in /website

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago - 1 comment
Labels: dependencies, javascript

#206 - Bump micromatch from 4.0.5 to 4.0.8 in /website

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago - 1 comment
Labels: dependencies, javascript

#205 - Bump webpack from 5.76.1 to 5.94.0 in /website

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago - 1 comment
Labels: dependencies, javascript

#204 - Bump braces from 3.0.2 to 3.0.3 in /website

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: dependencies, javascript

#203 - Bump express from 4.18.1 to 4.19.2 in /website

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, javascript

#202 - Bump webpack-dev-middleware from 5.3.3 to 5.3.4 in /website

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, javascript

#201 - Bump follow-redirects from 1.15.4 to 1.15.6 in /website

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, javascript

#200 - Bump got, @docusaurus/core, @docusaurus/preset-classic and @docusaurus/theme-search-algolia in /website

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 2 comments
Labels: dependencies, javascript

#199 - Bump axios, @docusaurus/core, @docusaurus/preset-classic and @docusaurus/theme-search-algolia in /website

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 2 comments
Labels: dependencies, javascript

#198 - Bump follow-redirects from 1.15.2 to 1.15.4 in /website

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, javascript

#197 - Bump @babel/traverse from 7.19.1 to 7.23.2 in /website

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, javascript

#196 - Bump postcss from 8.4.16 to 8.4.31 in /website

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, javascript

#195 - Bump semver from 5.7.1 to 5.7.2 in /website

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, javascript

#194 - I run rmspc had met some problems

Issue - State: closed - Opened by amateur-boy over 1 year ago - 4 comments

#193 - Add SonarCloud GitHub action.

Pull Request - State: closed - Opened by VJalili over 1 year ago - 1 comment

#192 - Problem about "Invalid culture info"

Issue - State: closed - Opened by xiagjt over 1 year ago - 7 comments
Labels: question, documentation

#191 - C argument does not accept percentage

Issue - State: closed - Opened by sufyazi over 1 year ago - 3 comments
Labels: question

#190 - Bump webpack from 5.74.0 to 5.76.1 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, javascript

#189 - How do I run the self-contained version?

Issue - State: closed - Opened by sufyazi over 1 year ago - 3 comments
Labels: question

#188 - Bump @sideway/formula from 3.0.0 to 3.0.1 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, javascript

#187 - Bump eta, @docusaurus/core, @docusaurus/preset-classic and @docusaurus/theme-search-algolia in /website

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, javascript

#186 - Bump http-cache-semantics from 4.1.0 to 4.1.1 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, javascript

#185 - Bump ua-parser-js from 0.7.31 to 0.7.33 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, javascript

#184 - Bump json5 from 2.2.1 to 2.2.3 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, javascript

#183 - Bump minimatch, recursive-readdir and serve-handler in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, javascript

#182 - Bump loader-utils from 2.0.3 to 2.0.4 in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, javascript

#181 - Fix a bug reporting incorrect number of consensus peaks on the terminal

Pull Request - State: closed - Opened by VJalili almost 2 years ago - 1 comment
Labels: bug, unit test

#180 - Extend tests asserting if peaks on all chrs and strands are exported

Pull Request - State: closed - Opened by VJalili almost 2 years ago - 1 comment
Labels: unit test

#179 - Bump loader-utils from 2.0.2 to 2.0.3 in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, javascript

#178 - Is it possible to get original pvalue in consensus peak file?

Issue - State: closed - Opened by nzx9581 almost 2 years ago - 10 comments

#177 - General improvements and clean up

Pull Request - State: closed - Opened by VJalili almost 2 years ago - 1 comment
Labels: unit test, code-smell, CLI, mspc-library

#176 - Make the analysis stranded

Pull Request - State: closed - Opened by VJalili almost 2 years ago - 1 comment
Labels: unit test, website, CLI, mspc-library

#175 - Set the default max degree of parallelism to the max allowed by the underlying scheduler

Pull Request - State: closed - Opened by VJalili almost 2 years ago - 1 comment
Labels: unit test, mspc-library

#174 - Update CLI to the v2 of System.CommandLine

Pull Request - State: closed - Opened by VJalili almost 2 years ago - 1 comment
Labels: unit test, website, CLI

#173 - Improve portability of benchmarking script

Pull Request - State: closed - Opened by VJalili almost 2 years ago - 1 comment
Labels: validation

#172 - Improvements to the benchmarking script

Pull Request - State: closed - Opened by VJalili almost 2 years ago - 1 comment
Labels: validation

#171 - Update validation scripts

Pull Request - State: closed - Opened by VJalili about 2 years ago - 1 comment
Labels: validation

#170 - Update website

Pull Request - State: closed - Opened by VJalili about 2 years ago - 1 comment
Labels: documentation

#169 - Improvements on the benchmarking script

Pull Request - State: closed - Opened by VJalili about 2 years ago - 1 comment

#168 - Improvements to the benchmarking scripts

Pull Request - State: closed - Opened by VJalili about 2 years ago - 1 comment

#167 - Scripts to benchmark different versions of MSPC

Pull Request - State: closed - Opened by VJalili about 2 years ago - 1 comment

#166 - Bump Newtonsoft.Json from 12.0.3 to 13.0.1 in /CLI

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#165 - strand information of the Consensus Peaks

Issue - State: closed - Opened by juylmin over 2 years ago - 4 comments
Labels: question

#164 - Number of consensus peaks and TruePositives are not changing in different runs

Issue - State: closed - Opened by juylmin over 2 years ago - 17 comments
Labels: question

#163 - Obtaining the actual values of 'inf's

Issue - State: closed - Opened by juylmin over 2 years ago - 3 comments
Labels: question

#162 - The number of consensus peaks is greater than that of individual replicates?

Issue - State: closed - Opened by nzx9581 over 2 years ago - 2 comments

#161 - output path

Issue - State: closed - Opened by Ollipolli1909 over 2 years ago - 3 comments
Labels: rmspc

#160 - Merge dev onto master.

Pull Request - State: closed - Opened by VJalili almost 3 years ago - 1 comment

#159 - Update to Docusaurus to version 2.0.0-beta

Pull Request - State: closed - Opened by VJalili almost 3 years ago - 1 comment
Labels: website

#158 - DOTNET CIFS version issues

Issue - State: closed - Opened by TheRealQuantumCheese almost 3 years ago - 7 comments

#157 - Bump algoliasearch-helper from 3.5.5 to 3.6.2 in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, javascript

#156 - Bump prismjs from 1.24.1 to 1.25.0 in /website

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, javascript

#155 - Bump axios from 0.21.1 to 0.21.4 in /website

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, javascript

#154 - Remove RWrapper folder

Pull Request - State: closed - Opened by VJalili about 3 years ago - 2 comments
Labels: rmspc

#153 - Github actions for running tests on linux

Pull Request - State: closed - Opened by VJalili about 3 years ago - 1 comment
Labels: unit test

#152 - Update Docusaurus version & add algolia to dependencies

Pull Request - State: closed - Opened by VJalili about 3 years ago - 1 comment
Labels: documentation

#151 - Developed a first version R package for mspc

Pull Request - State: closed - Opened by MeriemBahda over 3 years ago - 4 comments

#150 - What value to set for -c?

Issue - State: closed - Opened by danielcgingerich over 3 years ago - 2 comments
Labels: question

#149 - Report the export path on console

Pull Request - State: closed - Opened by VJalili over 3 years ago - 1 comment
Labels: unit test

#148 - Export results to a given output directory and log the absolute path

Pull Request - State: closed - Opened by VJalili over 3 years ago - 1 comment
Labels: unit test, documentation

#147 - Created the R function read_inputs

Pull Request - State: closed - Opened by MeriemBahda over 3 years ago - 2 comments

#146 - Error while running the v5.0.0 and v5.1.0 releases of MSPC

Issue - State: closed - Opened by MeriemBahda over 3 years ago - 5 comments

#145 - Error while running the recent version of MSPC

Issue - State: closed - Opened by MeriemBahda over 3 years ago - 2 comments
Labels: release

#144 - Adjust maximum value of C according to the number of given input samples

Pull Request - State: closed - Opened by VJalili over 3 years ago - 1 comment
Labels: unit test

#143 - Set ExitCode according to the termination status

Pull Request - State: closed - Opened by VJalili over 3 years ago - 3 comments
Labels: unit test

#142 - MSPC should report an appropriate exit code when terminated

Issue - State: closed - Opened by VJalili over 3 years ago

#140 - Improved the wrapper function mspc

Pull Request - State: closed - Opened by MeriemBahda over 3 years ago - 1 comment
Labels: rmspc

#139 - Add MSPC to `PATH`

Issue - State: open - Opened by VJalili over 3 years ago
Labels: documentation, rmspc

#138 - Change the target framework from .NET Core 3.x to .NET 5.x.

Pull Request - State: closed - Opened by VJalili over 3 years ago - 1 comment
Labels: documentation

#137 - Wrapper function

Pull Request - State: closed - Opened by MeriemBahda over 3 years ago - 1 comment
Labels: rmspc

#136 - Bump log4net from 2.0.8 to 2.0.10 in /CLI

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#135 - update documentation

Pull Request - State: closed - Opened by MeriemBahda over 3 years ago - 2 comments
Labels: documentation

#134 - Change target platform to .NET

Issue - State: closed - Opened by VJalili over 3 years ago

#133 - new paper figures scripts

Pull Request - State: closed - Opened by fernandoPalluzzi almost 4 years ago - 2 comments
Labels: validation

#132 - Report `inf` as a result of converting 0 to -Log10 format

Pull Request - State: closed - Opened by VJalili about 4 years ago - 1 comment
Labels: bug

#131 - Curious scores equal 0 (zero) in MSPC consensus file for replicated stringent peaks

Issue - State: closed - Opened by AlexBlais74 about 4 years ago - 9 comments
Labels: question, documentation

#130 - Consensus peaks, clarification on their definition and impact of the -c option

Issue - State: closed - Opened by AlexBlais74 about 4 years ago - 3 comments
Labels: documentation

#129 - Added MSPC validation figure R script and input file

Pull Request - State: closed - Opened by fernandoPalluzzi over 4 years ago - 1 comment

#128 - Fix code cov bug

Pull Request - State: closed - Opened by VJalili over 4 years ago - 1 comment
Labels: bug

#127 - Update website's template to Docusaurus v2

Pull Request - State: closed - Opened by VJalili over 4 years ago - 1 comment
Labels: documentation

#126 - Automatic threshold determination

Issue - State: open - Opened by ckuenne over 4 years ago - 8 comments
Labels: question, documentation

#125 - Fix CodeCoverage issue in Appveyor

Pull Request - State: closed - Opened by VJalili over 4 years ago - 1 comment

#124 - Update all nuget dependencies

Pull Request - State: closed - Opened by VJalili over 4 years ago
Labels: bug

#123 - MSPC cannot continue error

Issue - State: closed - Opened by LaraBM over 4 years ago - 4 comments
Labels: bug

#122 - Merge dev onto master

Pull Request - State: closed - Opened by VJalili almost 5 years ago - 1 comment
Labels: documentation

#121 - merge dev onto master

Pull Request - State: closed - Opened by VJalili almost 5 years ago - 1 comment

#120 - Build travis website when push/pr to master.

Pull Request - State: closed - Opened by VJalili almost 5 years ago - 1 comment

#119 - Remove annotation files stored via LFS

Pull Request - State: closed - Opened by VJalili almost 5 years ago - 1 comment