Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / GeneMANIA/genemania issues and pull requests

#207 - Why I can't visit the website of GeneMANIA?

Issue - State: closed - Opened by Y-Isaac 11 months ago - 2 comments

#206 - Installing Data dialog appears behind the other dialogs

Issue - State: closed - Opened by chrtannus 12 months ago - 1 comment
Labels: plugin

#205 - Where can I get the GENEMANIA_LUCENE_INDEX_DIR data,please help me

Issue - State: closed - Opened by xzhou89 over 1 year ago - 1 comment
Labels: duplicate

#204 - Plugin throws exception when importing a new organism

Issue - State: closed - Opened by chrtannus over 1 year ago - 2 comments
Labels: plugin, common

#203 - When createSearcher show No indices found, Where can I get it,Please help me

Issue - State: closed - Opened by xzhou89 over 1 year ago - 7 comments
Labels: data

#202 - Bump spring-webmvc from 4.3.20.RELEASE to 5.2.20.RELEASE in /website

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#201 - Bump spring-beans from 4.3.20.RELEASE to 5.2.20.RELEASE in /website

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#200 - Bump spring-webmvc from 3.1.2.RELEASE to 5.2.20.RELEASE in /adminweb

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#199 - Bump spring-web from 4.3.20.RELEASE to 6.0.0 in /website

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#198 - Bump spring-web from 3.1.2.RELEASE to 6.0.0 in /adminweb

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#197 - Bump jackson-databind from 2.9.7 to 2.12.7.1 in /common

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#196 - Bump spring-web from 3.1.2.RELEASE to 3.2.18.RELEASE in /adminweb

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#195 - Bump jackson-databind from 2.9.7 to 2.13.4.1 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#194 - Export results - in Genemania results panel menu - exports empty file

Issue - State: closed - Opened by risserlin over 2 years ago - 2 comments
Labels: bug, plugin

#193 - Bump jackson-databind from 2.9.7 to 2.12.6.1 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#192 - Bump spring-web from 3.1.2.RELEASE to 3.2.5.RELEASE in /adminweb

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#191 - Bump xalan from 2.7.1 to 2.7.2 in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#190 - Bump spring-expression from 4.3.20.RELEASE to 5.2.21.RELEASE in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#189 - Bump commons-email from 1.1 to 1.5 in /common

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#188 - Bump mysql-connector-java from 5.0.5 to 8.0.28 in /common

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#187 - Bump mysql-connector-java from 5.1.21 to 8.0.28 in /adminweb

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#186 - Bump mysql-connector-java from 5.0.5 to 8.0.28 in /plugin/plugin-core

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#185 - Bump spring-core from 4.3.20.RELEASE to 5.2.22.RELEASE in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#184 - Bump spring-core from 4.3.20.RELEASE to 5.2.22.RELEASE in /common

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#183 - Bump gson from 2.8.2 to 2.8.9 in /plugin/plugin-cy3

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#182 - Bump spring-core from 4.3.20.RELEASE to 5.3.19 in /common

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#181 - Bump spring-core from 4.3.20.RELEASE to 5.3.19 in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#179 - Bump spring-webmvc from 3.1.2.RELEASE to 5.3.18 in /adminweb

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#178 - Bump spring-webmvc from 4.3.20.RELEASE to 5.3.18 in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#177 - Bump spring-core from 4.3.20.RELEASE to 5.3.18 in /common

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#176 - Bump spring-core from 4.3.20.RELEASE to 5.3.18 in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#175 - Bump spring-beans from 4.3.20.RELEASE to 5.3.18 in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#174 - Export in svg/pdf

Issue - State: open - Opened by francicco almost 3 years ago - 4 comments

#173 - Bump xstream from 1.2.2 to 1.4.19 in /common

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#172 - Bump h2 from 1.3.176 to 2.1.210 in /adminweb

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#171 - Bump h2 from 1.3.176 to 2.0.206 in /adminweb

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#170 - genemania app command - add ability to specify attribute groups

Issue - State: open - Opened by risserlin about 3 years ago
Labels: enhancement, plugin

#169 - Bump jackson-databind from 2.9.7 to 2.9.10.8 in /common

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#168 - Bump xstream from 1.2.2 to 1.4.18 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#167 - GeneMANIA website suggestion: database release date + info

Issue - State: open - Opened by veroniquevoisin over 3 years ago - 1 comment

#166 - LuceneConnector static initialization order isse

Issue - State: open - Opened by AdamByerly over 3 years ago

#165 - Bump xstream from 1.2.2 to 1.4.17 in /common

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#163 - Bump commons-io from 2.4 to 2.7 in /adminweb

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#162 - Bump jackson.version from 2.9.7 to 2.12.3 in /common

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#161 - Bump xstream from 1.2.2 to 1.4.16 in /common

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#160 - Cytoscape command - add ability to check if genemania is responding

Issue - State: open - Opened by risserlin about 4 years ago
Labels: enhancement

#159 - Bump jackson.version from 2.9.7 to 2.12.1 in /common

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#158 - Bump xstream from 1.2.2 to 1.4.15 in /common

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#157 - Bump xstream from 1.2.2 to 1.4.13-java7 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#156 - Bump junit from 4.6 to 4.13.1 in /common

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#155 - Bump junit from 4.11 to 4.13.1 in /adminweb

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#154 - Bump junit from 4.6 to 4.13.1 in /website

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#153 - Bump junit from 4.7 to 4.13.1 in /engine

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#152 - Bump junit from 4.0 to 4.13.1 in /plugin

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#151 - Bump mysql-connector-java from 5.0.5 to 8.0.16 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#150 - Bump mysql-connector-java from 5.0.5 to 8.0.16 in /plugin/plugin-core

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#149 - Bump mysql-connector-java from 5.1.21 to 8.0.16 in /adminweb

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#148 - Bump xstream from 1.2.2 to 1.4.10-java7 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#147 - Bump commons-collections from 3.2.1 to 3.2.2 in /common

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#146 - Bump commons-collections from 3.2.1 to 3.2.2 in /engine

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#145 - Bump jackson.version from 2.9.7 to 2.11.0 in /common

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#144 - Problems with running a specific gene list

Issue - State: closed - Opened by RoniHaas almost 5 years ago - 3 comments

#143 - Bump jackson.version from 2.9.7 to 2.10.3 in /common

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#142 - Bump jackson.version from 2.9.7 to 2.10.2 in /common

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#141 - Bump jackson.version from 2.9.7 to 2.10.1 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago - 1 comment
Labels: dependencies

#140 - Bump xstream from 1.2.2 to 1.4.6 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago - 1 comment
Labels: dependencies

#139 - Bump commons-fileupload from 1.2.1 to 1.3.3 in /website

Pull Request - State: open - Opened by dependabot[bot] over 5 years ago
Labels: dependencies

#138 - Bump commons-fileupload from 1.2.2 to 1.3.3 in /adminweb

Pull Request - State: open - Opened by dependabot[bot] over 5 years ago
Labels: dependencies

#137 - Genemania Tool is down

Issue - State: closed - Opened by majumderS over 5 years ago - 2 comments

#136 - Bump jackson.version from 2.9.7 to 2.10.0 in /common

Pull Request - State: closed - Opened by dependabot[bot] over 5 years ago - 1 comment
Labels: dependencies

#135 - Cyrest command - add ability to get a simple list of organisms installed

Issue - State: open - Opened by risserlin over 5 years ago
Labels: enhancement

#133 - Network in online GeneMANIA looks different after Cytoscape import

Issue - State: open - Opened by shraddhapai over 5 years ago - 2 comments

#132 - Interpreting and filtering results by score

Issue - State: open - Opened by Niveda-S over 5 years ago

#127 - create EM from genemania enrichment results

Issue - State: open - Opened by risserlin almost 6 years ago

#126 - Rest access to genemania commands would be nice

Issue - State: open - Opened by risserlin about 6 years ago

#125 - network importer can not create new group.

Issue - State: open - Opened by risserlin about 6 years ago

#123 - Maven build fails for plugin on develop, plugin/3.4, plugin/3.3 and master

Issue - State: closed - Opened by philmaweb over 6 years ago - 5 comments

#122 - Refactor website-ui

Issue - State: open - Opened by maxkfranz almost 7 years ago
Labels: enhancement, website-ui

#121 - Hover help tooltips

Issue - State: open - Opened by maxkfranz almost 7 years ago
Labels: enhancement, website-ui

#120 - "Generate link" button

Issue - State: open - Opened by maxkfranz almost 7 years ago
Labels: enhancement, website-ui

#119 - Increase the contrast of the stripes on query genes

Issue - State: open - Opened by maxkfranz almost 7 years ago
Labels: enhancement, website-ui

#118 - Memory Leak

Issue - State: closed - Opened by ksindy over 7 years ago - 2 comments

#117 - V3.4 fixes

Pull Request - State: closed - Opened by mvpopa almost 8 years ago - 1 comment

#116 - Shortcut keys for viewport

Issue - State: open - Opened by maxkfranz almost 8 years ago
Labels: website-ui

#115 - Select query networks based on tags

Issue - State: open - Opened by maxkfranz almost 8 years ago
Labels: website-ui

#114 - Help pages : list gene ID types accepted

Issue - State: open - Opened by maxkfranz almost 8 years ago
Labels: pages

#113 - Slider incorrectly set to zero on app init (sometimes)

Issue - State: open - Opened by maxkfranz almost 8 years ago - 1 comment
Labels: bug, website-ui

#112 - GeneMANIA website: feedback from students CSHL 2017

Issue - State: open - Opened by veroniquevoisin almost 8 years ago - 1 comment

#111 - Update to Cytoscape.js 3.0

Issue - State: open - Opened by maxkfranz about 8 years ago - 2 comments
Labels: testing, website-ui, student-project-idea

#110 - Use new Safari fullscreen/rich-app mode

Issue - State: open - Opened by maxkfranz about 8 years ago

#108 - GeneMANIA app does not work on 3.4.0

Issue - State: closed - Opened by chrtannus about 8 years ago
Labels: bug, plugin

#106 - Graph bounds not updated after layout application

Issue - State: closed - Opened by maxkfranz over 8 years ago
Labels: bug, website-ui