GSTT-CSC/MLOps issues and pull requests

#173 - Fix GPU docker args populating when requested

Pull Request - State: closed - Opened by mikewoodward94 12 days ago - 1 comment

#172 - GPU docker args not being added

Issue - State: closed - Opened by mikewoodward94 12 days ago

#171 - remove XNAT-related scripts

Pull Request - State: closed - Opened by sophie22 16 days ago - 1 comment

#170 - Remove project/XNAT-specific functions

Issue - State: closed - Opened by sophie22 17 days ago

#169 - Update setup.cfg

Pull Request - State: closed - Opened by mikewoodward94 20 days ago - 1 comment

#168 - Update setup.cfg with latest packages

Issue - State: closed - Opened by tomaroberts 20 days ago

#167 - Fix failing test

Pull Request - State: closed - Opened by mikewoodward94 24 days ago - 1 comment

#166 - Test Run CLI failing

Issue - State: closed - Opened by mikewoodward94 24 days ago

#165 - Adds condition to retrieve Resource filenames from xnat_obj

Pull Request - State: closed - Opened by tomaroberts 26 days ago - 1 comment

#164 - Update README.md to include warning

Pull Request - State: closed - Opened by mikewoodward94 about 1 month ago - 1 comment

#163 - MLFlow security advisory

Issue - State: closed - Opened by mikewoodward94 about 1 month ago

#162 - Allow options for image series in LoadImageXNATd.py

Pull Request - State: closed - Opened by mikewoodward94 4 months ago - 1 comment

#161 - LoadImageXNATd: Add options for when more than one image series found in images path

Issue - State: closed - Opened by mikewoodward94 4 months ago
Labels: enhancement

#160 - update mlflow to 2.10.0

Pull Request - State: closed - Opened by AnilMistry 5 months ago

#159 - mlflow out of date

Issue - State: closed - Opened by laurencejackson 5 months ago

#158 - how to implement with other data sources then XNAT

Issue - State: open - Opened by helghast79 7 months ago

#157 - improve implementation of num_workers input for DataLoaders

Issue - State: open - Opened by sophie22 8 months ago
Labels: bug

#156 - Update README.md

Pull Request - State: closed - Opened by mikewoodward94 9 months ago - 1 comment

#155 - README AWS Credentials example incorrect.

Issue - State: closed - Opened by mikewoodward94 9 months ago

#154 - README out of date – refers to old LoadXNATImaged

Issue - State: open - Opened by tomaroberts 10 months ago
Labels: documentation

#153 - improvements to XNAT data fetching

Issue - State: open - Opened by laurencejackson 10 months ago

#152 - incompatibility with M1 chip

Issue - State: closed - Opened by sophie22 12 months ago - 1 comment
Labels: documentation

#151 - specify version number for required packages

Issue - State: open - Opened by sophie22 12 months ago
Labels: enhancement

#150 - Set up a backup for registered models

Issue - State: open - Opened by laurencejackson about 1 year ago

#149 - Remove torch and Monai from required packages

Issue - State: open - Opened by laurencejackson about 1 year ago

#148 - Improve code layout and test coverage

Issue - State: open - Opened by laurencejackson about 1 year ago

#147 - Reverts proxied storage

Pull Request - State: closed - Opened by laurencejackson about 1 year ago - 1 comment

#146 - Revert to non-proxied artefact storage

Issue - State: closed - Opened by laurencejackson about 1 year ago

#145 - 142 automate application release process

Pull Request - State: closed - Opened by laurencejackson about 1 year ago - 1 comment

#144 - Update figures in readme

Pull Request - State: closed - Opened by laurencejackson about 1 year ago - 1 comment

#143 - Update readme

Issue - State: closed - Opened by laurencejackson about 1 year ago

#142 - Automate application release process

Issue - State: closed - Opened by laurencejackson over 1 year ago - 3 comments

#141 - create `mlops release` function to push artifacts to cloud for build

Issue - State: closed - Opened by laurencejackson over 1 year ago - 4 comments

#140 - Add instructions for how to update MLOPs

Issue - State: open - Opened by dangerdika over 1 year ago

#139 - Expose docker args to mlops run

Issue - State: open - Opened by laurencejackson over 1 year ago

#138 - Fixes excessive logging

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#137 - Add base image to project template

Issue - State: open - Opened by laurencejackson over 1 year ago

#136 - Load images directly from XNAT store

Issue - State: open - Opened by laurencejackson over 1 year ago

#134 - Option to cache XNAT data

Issue - State: open - Opened by laurencejackson over 1 year ago

#133 - dockerignore is ignored

Issue - State: open - Opened by laurencejackson over 1 year ago

#132 - Raise warning if docker context is large

Issue - State: open - Opened by laurencejackson over 1 year ago
Labels: bug, good first issue

#131 - 129 handle multtiple valid experiments in xnat

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#130 - Improve test coverage

Issue - State: open - Opened by laurencejackson over 1 year ago
Labels: good first issue

#129 - Handle multtiple valid experiments in XNAT

Issue - State: closed - Opened by laurencejackson over 1 year ago
Labels: bug

#128 - updates mlflow to used proxied artifact storage

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#127 - adds shared memory to cli

Pull Request - State: closed - Opened by laurencejackson over 1 year ago

#126 - Auto retry

Pull Request - State: closed - Opened by laurencejackson over 1 year ago

#125 - fix for nfiles != nframes

Pull Request - State: closed - Opened by laurencejackson over 1 year ago

#124 - ensure all actions return value

Pull Request - State: closed - Opened by laurencejackson over 1 year ago

#123 - catch failed images

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#122 - Reduce stdout

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#121 - Async xnat build

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#120 - parallelise the xnat_build_dataset

Issue - State: closed - Opened by laurencejackson over 1 year ago - 1 comment
Labels: enhancement

#119 - Raises exception when unable to load data

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#118 - restore gpu to docker run

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#117 - Add rebuild flag

Pull Request - State: closed - Opened by laurencejackson over 1 year ago

#116 - update docker build args

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#115 - fix test_batch feature

Pull Request - State: closed - Opened by laurencejackson over 1 year ago

#114 - Fetch non image data as action

Pull Request - State: closed - Opened by laurencejackson over 1 year ago

#113 - Xnat data checker

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#112 - Adds run name to cli

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#111 - upgrade mlflow to 2.0.1

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#110 - Update server configuration to scenario 5

Issue - State: closed - Opened by laurencejackson over 1 year ago
Labels: enhancement

#109 - 108 add windows docker build log

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#108 - add windows docker build log

Issue - State: closed - Opened by laurencejackson over 1 year ago

#107 - Adds install_requires to setup.py and cli_test

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#106 - ensure required packages are isntalled through pip

Issue - State: closed - Opened by laurencejackson over 1 year ago
Labels: bug

#105 - add run name to cli

Issue - State: closed - Opened by laurencejackson over 1 year ago

#104 - upgrade mlflow

Issue - State: closed - Opened by laurencejackson over 1 year ago

#103 - Integrate MLOps and lightning loggers

Issue - State: closed - Opened by laurencejackson over 1 year ago
Labels: enhancement, good first issue

#102 - Integrate mlflow with MAP packaging

Issue - State: open - Opened by laurencejackson over 1 year ago
Labels: enhancement

#101 - add logging level to `mlops run` options

Issue - State: open - Opened by laurencejackson over 1 year ago
Labels: enhancement, good first issue

#100 - Update minio

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#99 - Add server status check

Issue - State: open - Opened by laurencejackson over 1 year ago - 4 comments
Labels: bug, good first issue

#98 - Update tools.py

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#97 - 84 capture stdout when building docker images

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#96 - Add test batch xnat loader

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#95 - Replace minio authentication method

Issue - State: closed - Opened by laurencejackson over 1 year ago
Labels: enhancement

#94 - Remove containers after project is run

Issue - State: open - Opened by laurencejackson over 1 year ago
Labels: enhancement

#93 - Git check will always return dirty repository

Issue - State: open - Opened by laurencejackson over 1 year ago
Labels: bug

#92 - 86 change the way projects are run

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#91 - Image loader compatability

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#90 - Updates to use all actions

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#89 - Create combined XNAT actions compose object

Issue - State: open - Opened by laurencejackson over 1 year ago
Labels: enhancement

#88 - ignore any xnat samples that raise a TypeError

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#87 - Actions in dataset builder

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#86 - Change the way projects are run

Issue - State: closed - Opened by laurencejackson over 1 year ago
Labels: enhancement

#85 - Update LoadImageXNATd.py

Pull Request - State: closed - Opened by laurencejackson over 1 year ago - 1 comment

#84 - capture stdout when building docker images

Issue - State: closed - Opened by laurencejackson almost 2 years ago
Labels: enhancement

#83 - validate_data feature for LoadImageXNATd can only handle a single action

Issue - State: closed - Opened by laurencejackson almost 2 years ago - 1 comment

#82 - Fixes MLOps project run

Pull Request - State: closed - Opened by laurencejackson about 2 years ago - 1 comment

#81 - Update README for xnat_configuration

Issue - State: open - Opened by AnilMistry about 2 years ago - 1 comment
Labels: documentation

#80 - Skip git check

Pull Request - State: closed - Opened by laurencejackson about 2 years ago - 2 comments

#79 - Readme updates

Pull Request - State: closed - Opened by laurencejackson about 2 years ago - 2 comments

#78 - Fixes bug causing validate_data to download data

Pull Request - State: closed - Opened by laurencejackson about 2 years ago - 1 comment

#77 - Fixed bug: xnat_obj used before it is defined

Pull Request - State: closed - Opened by laurencejackson about 2 years ago - 1 comment

#76 - Remove wait for requests resolved related issue

Pull Request - State: closed - Opened by laurencejackson about 2 years ago

#75 - add pause to allow xnat request to complete

Pull Request - State: closed - Opened by laurencejackson about 2 years ago

#74 - Changes requests verify to config parameter

Pull Request - State: closed - Opened by laurencejackson about 2 years ago - 1 comment

#73 - Error handling

Pull Request - State: closed - Opened by laurencejackson about 2 years ago - 1 comment

GitHub / GSTT-CSC/MLOps issues and pull requests