Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / GMOD/jbrowse issues and pull requests
#1655 - Adding New Reference
Issue -
State: closed - Opened by marcodimarsico about 2 months ago
- 2 comments
#1653 - Hi-C track: normalization and resolution
Issue -
State: closed - Opened by ianakim 4 months ago
#1652 - node-modules folder is not created after running ./setup.sh
Issue -
State: open - Opened by kostasgalexiou 4 months ago
#1651 - [Question] Is there a way to reduce number of files generated during indexing?
Issue -
State: open - Opened by shreyas-a-s 6 months ago
- 1 comment
#1650 - [Question] Is there any hideURIs option like JBrowse 2?
Issue -
State: closed - Opened by shreyas-a-s 6 months ago
- 2 comments
#1648 - Using a callback to set the height of sub-features is causing some of those features to be only partially-rendered
Issue -
State: open - Opened by john-portwood 9 months ago
- 6 comments
#1643 - Feature Request display CIGAR mismatch codes when zoomed out more
Issue -
State: open - Opened by childers over 1 year ago
- 1 comment
#1642 - url controllable Highlighting in JB2
Issue -
State: closed - Opened by thomasvangurp almost 2 years ago
- 2 comments
#1641 - Pangenome presence absence viz ?
Issue -
State: open - Opened by colindaven almost 2 years ago
- 2 comments
#1639 - Adding .bam and .bai from a server to the track.
Issue -
State: closed - Opened by adaware-loxo almost 2 years ago
- 3 comments
#1637 - Fix adding track in BioNanoGenomics plugins
Pull Request -
State: open - Opened by cmdcolin almost 2 years ago
#1632 - Cannot install jbrowse-1.16.11-release developer version on macos ventura
Issue -
State: open - Opened by thuynnguyen about 2 years ago
- 1 comment
#1630 - Hello, I am testing to replace jbrowse with mouse data, but the tbi of the mouse gff3 file is always wrong here. I don't know what is wrong. I would like to ask you about the index. Do you have any mouse data to provide? ? thanks
Issue -
State: open - Opened by ouyang-lang almost 3 years ago
- 11 comments
#1629 - Tabix error
Issue -
State: closed - Opened by francicco almost 3 years ago
- 5 comments
#1627 - color of glyph
Issue -
State: closed - Opened by srobb1 almost 3 years ago
- 6 comments
#1626 - Updating Node Deps
Pull Request -
State: open - Opened by childers about 3 years ago
- 1 comment
#1624 - XS.c: loadable library and perl binaries are mismatched (got handshake key 0xde00080, needed 0xcd00080)
Issue -
State: closed - Opened by linnabrown about 3 years ago
- 6 comments
#1619 - Problem with combination track, not working
Issue -
State: open - Opened by armaos about 3 years ago
- 10 comments
#1618 - Question: JB1 reference sequence alias?
Issue -
State: closed - Opened by srobb1 about 3 years ago
- 9 comments
#1617 - HTML linkouts in 1.16.11-release not rendering in the About this track panel
Issue -
State: closed - Opened by childers about 3 years ago
- 2 comments
#1616 - Links for older releases on the website are 404s
Issue -
State: closed - Opened by kevinlul about 3 years ago
- 5 comments
#1615 - ItemRgb not working for me
Issue -
State: closed - Opened by srobb1 over 3 years ago
- 6 comments
#1614 - SNPCoverage plots display fine with old laptop but not with new laptop
Issue -
State: closed - Opened by Joseph-Vineland over 3 years ago
- 7 comments
#1612 - Possible feature request
Issue -
State: open - Opened by ValWood over 3 years ago
- 4 comments
#1611 - Some question about y-axis scales on track
Issue -
State: closed - Opened by ydy1127 over 3 years ago
- 10 comments
#1610 - RequestError: Unable to load http://ip/jbrowse/JBrowse-1.16.11/data/CSV21/trackList.json?v=0.08820448948622106 status: 403.
Issue -
State: closed - Opened by xiaoaozqd over 3 years ago
- 8 comments
#1609 - onClick problem with URL
Issue -
State: closed - Opened by mictadlo over 3 years ago
- 7 comments
#1608 - Search by gene name
Issue -
State: closed - Opened by fuzing over 3 years ago
- 1 comment
#1607 - Remove node-sass to help avoid some install issues
Pull Request -
State: closed - Opened by cmdcolin over 3 years ago
- 3 comments
#1606 - tab focus for accessibility enhancement?
Issue -
State: open - Opened by mpoelchau over 3 years ago
- 3 comments
#1605 - Update jbrowse 1 website header to refer to jbrowse 2
Pull Request -
State: closed - Opened by cmdcolin over 3 years ago
#1604 - What these values consist of "3a6/c61/ab" in the last end point when we hit hit track information......seq/3a6/c61/ab/110-38.txt ?
Issue -
State: closed - Opened by sarimurrab over 3 years ago
- 2 comments
#1603 - JBrowser configuration
Issue -
State: closed - Opened by werhmk over 3 years ago
- 3 comments
#1602 - Bump hosted-git-info from 2.7.1 to 2.8.9 in /website
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#1601 - Bump hosted-git-info from 2.8.8 to 2.8.9
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#1600 - Bump lodash from 4.17.14 to 4.17.21 in /website
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1599 - Bump handlebars from 4.7.3 to 4.7.7
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1598 - Bump lodash from 4.17.15 to 4.17.21
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1597 - Bump url-parse from 1.4.3 to 1.5.1 in /website
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1596 - Feature start offset of one between Front-end and JS object
Issue -
State: closed - Opened by Bjoernsen almost 4 years ago
- 2 comments
#1595 - Available tracks window size
Issue -
State: closed - Opened by demis001 almost 4 years ago
- 5 comments
#1594 - Feature request: Absolute paths in configs
Issue -
State: closed - Opened by Gogis0 almost 4 years ago
- 4 comments
#1593 - reference sequence
Issue -
State: closed - Opened by scottcain almost 4 years ago
- 4 comments
#1592 - Bigwig XYplot
Issue -
State: closed - Opened by demis001 almost 4 years ago
- 11 comments
#1591 - JS class name of the glyph available options
Issue -
State: closed - Opened by demis001 almost 4 years ago
- 6 comments
#1590 - Update README.md to refer to jbrowse 2
Pull Request -
State: closed - Opened by cmdcolin almost 4 years ago
#1589 - Failed to load resource: JBrowse/View/Track/Alignment2.
Issue -
State: closed - Opened by JojoZhangxinye almost 4 years ago
- 3 comments
#1587 - is there a way to organize a large number of datasets?
Issue -
State: open - Opened by jvera888 almost 4 years ago
- 2 comments
#1586 - Bump y18n from 3.2.1 to 3.2.2
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1585 - remove forward and back slashes from chunk filenames when formatting …
Pull Request -
State: closed - Opened by rbuels almost 4 years ago
- 11 comments
#1584 - Vhost SSL setting gave 403 error, http works
Issue -
State: closed - Opened by demis001 almost 4 years ago
- 2 comments
#1583 - Bump yargs-parser from 5.0.0 to 5.0.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1582 - Bump ini from 1.3.5 to 1.3.8
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1581 - Bump bl from 1.2.2 to 1.2.3
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1580 - Move jszlib dependency to util directory
Pull Request -
State: closed - Opened by cmdcolin almost 4 years ago
#1579 - Bump elliptic from 6.5.2 to 6.5.4
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#1578 - Question: align CanvasFeatures to the top
Issue -
State: closed - Opened by Bjoernsen almost 4 years ago
- 6 comments
#1577 - Visualize multiple values per site in the same bigwig track
Issue -
State: closed - Opened by yzhang2168 almost 4 years ago
- 12 comments
#1576 - Bump prismjs from 1.15.0 to 1.23.0 in /website
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 2 comments
Labels: dependencies
#1575 - Save a static version Jbrowse on figshare
Issue -
State: closed - Opened by Jungal10 almost 4 years ago
- 4 comments
#1573 - Bump electron from 3.1.13 to 9.4.0
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
- 1 comment
Labels: dependencies
#1572 - Add a retry step to fetching features.
Pull Request -
State: open - Opened by cmunk about 4 years ago
- 2 comments
#1571 - Cannot be displayed on the external network
Issue -
State: closed - Opened by dbx-git about 4 years ago
- 8 comments
#1570 - JBrowse install on Mac Big Sur
Issue -
State: closed - Opened by coralzhang about 4 years ago
- 7 comments
#1569 - Bump @gmod/tabix for textdecoder speedup
Pull Request -
State: closed - Opened by cmdcolin about 4 years ago
#1568 - Display of metrics and other information for gene models in JBrowse
Issue -
State: closed - Opened by sanyalab about 4 years ago
- 21 comments
#1567 - configure mouse click behavior using text based .conf
Issue -
State: closed - Opened by billzt about 4 years ago
- 2 comments
#1566 - Bump prismjs from 1.15.0 to 1.22.0 in /website
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
- 1 comment
Labels: dependencies
#1565 - Bump lodash from 4.17.14 to 4.17.20 in /website
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
- 1 comment
Labels: dependencies
#1564 - Bump ini from 1.3.5 to 1.3.8 in /website
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
- 1 comment
Labels: dependencies
#1562 - Bump bl from 1.2.2 to 1.2.3 in /website
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
Labels: dependencies
#1558 - Deals with ACLs
Pull Request -
State: open - Opened by FredericBGA about 4 years ago
- 5 comments
#1557 - Bump highlight.js from 9.12.0 to 9.18.5 in /website
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
- 1 comment
Labels: dependencies
#1556 - adding annotation on a gff file results in uniqueID offset-1968619510"
Issue -
State: open - Opened by Jungal10 about 4 years ago
- 9 comments
#1555 - setup.sh yarn install fails - "Commit hash required"
Issue -
State: closed - Opened by GFJHogue about 4 years ago
- 4 comments
#1554 - Fix maker2jbrowse genespans
Pull Request -
State: open - Opened by cmdcolin over 4 years ago
#1552 - How to use JBrowse when use the framework -- vue and webpack.
Issue -
State: closed - Opened by linjiahao962889027 over 4 years ago
- 2 comments
#1544 - Bump node-fetch from 2.6.0 to 2.6.1
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#1543 - adding a little help text
Pull Request -
State: open - Opened by scottcain over 4 years ago
#1542 - Some browser can not display the bam file
Issue -
State: closed - Opened by Trandamere over 4 years ago
- 10 comments
#1540 - syntaxError for gff file when gff is empty for current chromosome
Issue -
State: closed - Opened by jjjscuedu over 4 years ago
- 3 comments
#1537 - Bump prismjs from 1.15.0 to 1.21.0 in /website
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#1534 - Bump elliptic from 6.5.2 to 6.5.3
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#1532 - Bump lodash from 4.17.14 to 4.17.19 in /website
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#1531 - Bump lodash from 4.17.15 to 4.17.19
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#1527 - Bump electron from 3.1.13 to 7.2.4
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#1526 - Error: jbrowse‘s index.html cannnot display
Issue -
State: closed - Opened by AlexLc6 over 4 years ago
- 6 comments
#1524 - Another Error: too may BAM features... question
Issue -
State: closed - Opened by bioinfornatics over 4 years ago
- 9 comments
#1522 - Can loops called from CHIA-PET/HI-CHIP data can be load into JBrower ?
Issue -
State: closed - Opened by JiaoLaboratory over 4 years ago
- 3 comments
#1517 - Bump dijit from 1.16.2 to 1.16.3
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#1515 - Bump websocket-extensions from 0.1.3 to 0.1.4 in /website
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#1511 - flatfile-to-json.pl --bed does not generate subfeatures anymore
Issue -
State: open - Opened by mpoelchau over 4 years ago
- 16 comments
#1504 - representing newlines in the track metadata
Issue -
State: closed - Opened by mpoelchau over 4 years ago
- 5 comments
#1477 - Allow generate-names.pl to index utf8 trackLabels
Pull Request -
State: open - Opened by cmdcolin almost 5 years ago
#1472 - adding a build environment dockerfile for jbrowse
Pull Request -
State: open - Opened by scottcain almost 5 years ago
- 4 comments
#1441 - Add BedGraphTabix store
Pull Request -
State: open - Opened by cmdcolin over 5 years ago
#1417 - Add sequence search track: too long names
Issue -
State: closed - Opened by billzt over 5 years ago
- 11 comments
#1389 - Format entire codebase with eslint config
Pull Request -
State: open - Opened by cmdcolin over 5 years ago
- 1 comment
#1371 - Babel 7 upgrade
Pull Request -
State: open - Opened by cmdcolin over 5 years ago
- 2 comments
#1316 - Searching for annotation id names failed
Issue -
State: closed - Opened by mictadlo almost 6 years ago
- 15 comments