Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / GMOD/jbrowse-plugin-gdc issues and pull requests

#75 - Applying filters should refresh the layout

Issue - State: open - Opened by cmdcolin about 1 year ago - 1 comment

#74 - Refactors for linting and typescripting

Pull Request - State: closed - Opened by cmdcolin about 1 year ago

#73 - Possible ideas: modularize out MAF and SegmentCNV adapters

Issue - State: open - Opened by cmdcolin about 1 year ago

#72 - Demo config file http 404

Issue - State: closed - Opened by SamCT about 1 year ago - 3 comments

#71 - Consider moving data import workflow to the add track dropdown

Issue - State: open - Opened by carolinebridge-oicr over 2 years ago
Labels: enhancement

#69 - Use updated internet account base model

Pull Request - State: closed - Opened by garrettjstevens about 3 years ago - 1 comment

#68 - Use new plugin template to update build system

Pull Request - State: closed - Opened by garrettjstevens about 3 years ago - 2 comments

#67 - adding adapter for splice junction data

Pull Request - State: closed - Opened by carolinebridge-oicr about 3 years ago

#66 - Verify extent of filesizes for remote fetching

Issue - State: open - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#65 - Add automated testing for remote files from the GDC

Issue - State: open - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#64 - Colour Feature Enhancements

Issue - State: open - Opened by carolinebridge-oicr over 3 years ago - 1 comment
Labels: enhancement

#61 - fix operand to capture features outside the queried boundary

Pull Request - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: bug

#60 - fix query for true iscancergenecensus and fixes colouration on filter

Pull Request - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: bug

#59 - Apparent conflict between GDC 'explore' tracks and their filters

Issue - State: open - Opened by carolinebridge-oicr over 3 years ago - 1 comment
Labels: bug

#58 - Jexl function for colouring genes doesn't seem to be applying

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: bug

#57 - Genes are truncated after zooming in

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago - 1 comment
Labels: bug

#55 - fix plugin-replace message on compilation

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#54 - Connect GDC resources with core authentication

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#53 - Ensure remaining data types derived from the GDC can be processed and displayed

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#51 - [maf-implementation] adding maf adapter

Pull Request - State: closed - Opened by carolinebridge-oicr over 3 years ago

#49 - adding explicitIdentifier to GDCAdapter

Pull Request - State: closed - Opened by carolinebridge-oicr over 3 years ago - 5 comments

#45 - update onDrop function in the import panel to be able to grow with new file adapters being added

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago - 1 comment
Labels: enhancement

#44 - Add adapter and enforce visualization for Splice Junction Quantification

Issue - State: open - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#40 - import explore session via uri

Pull Request - State: closed - Opened by carolinebridge-oicr over 3 years ago

#39 - auth ui adjustments and cleanup

Pull Request - State: closed - Opened by carolinebridge-oicr over 3 years ago

#35 - Increase height on segmentCNV tracks to fix schema validation errors

Pull Request - State: closed - Opened by cmdcolin over 3 years ago

#34 - jbrowse2 updates after 1.3.0 break segment cnv adapter

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: bug

#33 - design and implement vcf adapter

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago - 2 comments

#32 - process gdc data that is downloaded as a .gz

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago - 8 comments

#28 - console errors when scrolling through tracks

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago - 2 comments
Labels: bug

#27 - switching between track type should not clear filters chosen

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: bug

#26 - fix current tests, implement new ones, and establish CI

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#24 - [updating-plugin-version] adding import of plugin version

Pull Request - State: closed - Opened by carolinebridge-oicr over 3 years ago

#22 - add gene query when gene JSON pulled into plugin

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#21 - [json-import] adding json import for gdc data

Pull Request - State: closed - Opened by carolinebridge-oicr over 3 years ago

#20 - allow login to gdc site with token

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#19 - allow filtering gdc track using url from gdc explore site

Issue - State: closed - Opened by carolinebridge-oicr over 3 years ago
Labels: enhancement

#15 - Import version field

Issue - State: closed - Opened by cmdcolin almost 4 years ago
Labels: bug

#14 - Visualize multiple data types from GDC

Issue - State: open - Opened by cmdcolin almost 4 years ago - 2 comments

#13 - Use top level imports

Pull Request - State: closed - Opened by cmdcolin almost 4 years ago

#12 - Error publishing new version

Issue - State: closed - Opened by cmdcolin almost 4 years ago - 2 comments

#10 - json import from gdc

Issue - State: closed - Opened by carolinebridge-oicr almost 4 years ago

#9 - [ISSUE-08] replace basefeaturedetails with featuredetails

Pull Request - State: closed - Opened by carolinebridge-oicr almost 4 years ago

#8 - BaseFeatureDetail component currently crashes the app when used

Issue - State: closed - Opened by carolinebridge-oicr almost 4 years ago
Labels: bug

#6 - Update to use jexl syntax in track configs

Issue - State: closed - Opened by cmdcolin almost 4 years ago - 1 comment

#5 - Use TSDX to build package

Pull Request - State: closed - Opened by garrettjstevens about 4 years ago - 1 comment

#4 - Update to work with 1.0.0 changes to JBrowse

Pull Request - State: closed - Opened by garrettjstevens about 4 years ago - 1 comment

#3 - Prototype TSDX cjs, esm, and umd build

Pull Request - State: closed - Opened by garrettjstevens over 4 years ago - 1 comment

#2 - DrawerWidget -> Widget

Pull Request - State: closed - Opened by garrettjstevens over 4 years ago

#1 - DrawerWidget -> Widget

Pull Request - State: closed - Opened by garrettjstevens over 4 years ago - 1 comment