Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / GMOD/bam-js issues and pull requests
#105 - Fix bug with incorrect coverage being rendered in jbrowse
Pull Request -
State: closed - Opened by cmdcolin 14 days ago
#104 - Refactor BAM record class to avoid lower casing all tag names
Pull Request -
State: closed - Opened by cmdcolin 18 days ago
- 1 comment
#103 - Fix BAM header parsing failing on refNames containing a colon
Pull Request -
State: closed - Opened by cmdcolin 9 months ago
- 1 comment
#102 - Update to buffer-crc32 1.0.0
Pull Request -
State: closed - Opened by kibertoad 10 months ago
- 2 comments
#101 - Update eslint to properly use typescript config
Pull Request -
State: closed - Opened by cmdcolin 10 months ago
- 1 comment
#100 - Support for Content-Encoding:gzip(?)
Issue -
State: open - Opened by cmdcolin 12 months ago
- 2 comments
#99 - Remove dependency on long package
Pull Request -
State: closed - Opened by cmdcolin over 1 year ago
#98 - feat: explicit buffer import
Pull Request -
State: closed - Opened by sehilyi over 1 year ago
- 3 comments
#97 - Typing issues
Issue -
State: open - Opened by tuner over 1 year ago
- 5 comments
#96 - Improve typescripting, remove chunkSizeLimit/fetchSizeLimit
Pull Request -
State: closed - Opened by cmdcolin over 1 year ago
- 3 comments
#95 - Update devDeps, remove object.entries and cross-fetch polyfills, improved typescripting
Pull Request -
State: closed - Opened by cmdcolin over 1 year ago
- 3 comments
#94 - Bump json5 from 1.0.1 to 1.0.2
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 2 comments
Labels: dependencies
#93 - LocalFile is not a constructor
Issue -
State: closed - Opened by amijalis about 2 years ago
- 2 comments
#92 - Use --module esm for module in package.json
Pull Request -
State: closed - Opened by cmdcolin over 2 years ago
- 1 comment
#91 - Bump minimist from 1.2.5 to 1.2.6
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 2 comments
Labels: dependencies
#90 - Publish source directory for bam-js for source-map
Pull Request -
State: closed - Opened by cmdcolin over 2 years ago
- 2 comments
#89 - Restore chunk cache for speed improvements
Pull Request -
State: closed - Opened by cmdcolin over 2 years ago
- 2 comments
#88 - Proposed optimizations to BAM records
Pull Request -
State: closed - Opened by cmdcolin over 2 years ago
- 4 comments
#87 - Add blocksForRange to BamFile class to fix issue with refId vs refName confusion
Pull Request -
State: closed - Opened by cmdcolin almost 3 years ago
- 1 comment
#86 - htsget auth support
Issue -
State: open - Opened by brainstorm almost 3 years ago
- 4 comments
#85 - Typescript build with esm module in package.json
Pull Request -
State: closed - Opened by cmdcolin almost 3 years ago
- 3 comments
#84 - fetch size limit error with `pairAcrossChr`
Issue -
State: closed - Opened by sehilyi about 3 years ago
- 2 comments
#83 - Missing end position in read mate?
Issue -
State: closed - Opened by alexander-veit about 3 years ago
- 2 comments
#82 - Bump tmpl from 1.0.4 to 1.0.5
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#81 - Bump ws from 5.2.2 to 5.2.3
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#80 - Fix typo in CHANGELOG.md
Pull Request -
State: closed - Opened by sehilyi about 3 years ago
- 1 comment
#79 - Bump path-parse from 1.0.6 to 1.0.7
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#78 - need explanation for usage
Issue -
State: closed - Opened by hth4 over 3 years ago
- 5 comments
#77 - Bump browserslist from 4.12.0 to 4.16.6
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#76 - Bump hosted-git-info from 2.8.8 to 2.8.9
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#75 - Bump lodash from 4.17.15 to 4.17.21
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#74 - Bump handlebars from 4.7.6 to 4.7.7
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#73 - Bump y18n from 4.0.0 to 4.0.1
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#72 - Yield thread time
Pull Request -
State: closed - Opened by cmdcolin over 3 years ago
- 3 comments
#71 - Raw qual score accessor function
Pull Request -
State: closed - Opened by cmdcolin almost 4 years ago
- 1 comment
#70 - Add getHeaderText to bamFile
Pull Request -
State: closed - Opened by cmdcolin almost 4 years ago
#69 - Bump ini from 1.3.5 to 1.3.7
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#68 - Port canMergeBlocks for CSI from the existing use in BAI
Pull Request -
State: closed - Opened by cmdcolin almost 4 years ago
- 1 comment
#67 - Htsget unable to fetch header from some endpoints
Issue -
State: open - Opened by cmdcolin about 4 years ago
- 7 comments
#66 - Feature sequence is undefined
Issue -
State: closed - Opened by alexander-veit about 4 years ago
- 2 comments
#65 - Fix unsigned vs signed values
Pull Request -
State: closed - Opened by cmdcolin about 4 years ago
- 1 comment
#64 - Wrong negative number values being reported for some tags
Issue -
State: closed - Opened by cmdcolin about 4 years ago
Labels: bug
#63 - Support CG tag for really long reads
Pull Request -
State: closed - Opened by cmdcolin about 4 years ago
- 1 comment
#62 - All tags are stored in lower case, but technically lower case tags are distinct from upper case
Issue -
State: closed - Opened by cmdcolin about 4 years ago
- 1 comment
#61 - Simplifications of unzip
Pull Request -
State: closed - Opened by cmdcolin over 4 years ago
- 1 comment
#60 - Htsget data fetching
Pull Request -
State: closed - Opened by cmdcolin over 4 years ago
- 3 comments
#59 - Bump lodash from 4.17.15 to 4.17.19
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 2 comments
Labels: dependencies
#58 - Large amount of short reads bogs jbrowse down
Issue -
State: open - Opened by cmdcolin over 4 years ago
- 1 comment
#57 - Bump acorn from 5.7.3 to 5.7.4
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#56 - Remove babel from build [work in progress]
Pull Request -
State: closed - Opened by cmdcolin over 4 years ago
- 3 comments
#55 - Progress bar
Pull Request -
State: open - Opened by cmdcolin over 4 years ago
Labels: enhancement
#54 - Improve bam performance
Pull Request -
State: closed - Opened by cmdcolin over 4 years ago
- 1 comment
#53 - Add unzipChunkSlice method from new @gmod/bgzf-filehandle version
Pull Request -
State: closed - Opened by cmdcolin almost 5 years ago
- 1 comment
#52 - Support BAI index aka BAM index index
Issue -
State: open - Opened by cmdcolin almost 5 years ago
- 1 comment
#51 - add SAM parsing
Issue -
State: open - Opened by cmdcolin almost 5 years ago
#50 - Bump handlebars from 4.1.2 to 4.5.3
Pull Request -
State: closed - Opened by dependabot[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#49 - Add ability to read from server that is returning badly non-gzipped data
Pull Request -
State: closed - Opened by cmdcolin almost 5 years ago
- 2 comments
#48 - Add example test file for failing "ID" tag decode
Pull Request -
State: closed - Opened by cmdcolin about 5 years ago
- 2 comments
Labels: bug
#47 - Create fileoffset from "canonical" block being unzipped
Pull Request -
State: closed - Opened by cmdcolin about 5 years ago
- 5 comments
#46 - Alt chunk merging
Pull Request -
State: closed - Opened by cmdcolin about 5 years ago
- 4 comments
#45 - Make limits larger
Pull Request -
State: closed - Opened by cmdcolin about 5 years ago
- 4 comments
#44 - Restore chunk merging and crc32 feature IDs
Pull Request -
State: closed - Opened by cmdcolin about 5 years ago
- 2 comments
#43 - Not fetching all reads
Issue -
State: closed - Opened by cmdcolin about 5 years ago
- 1 comment
Labels: bug
#42 - Use returned buffer instead of passed-in buffer
Pull Request -
State: closed - Opened by garrettjstevens about 5 years ago
- 2 comments
#41 - Parsing code for split alignments/chimeric reads
Pull Request -
State: closed - Opened by cmdcolin about 5 years ago
- 2 comments
#40 - Typescript
Pull Request -
State: closed - Opened by cmdcolin about 5 years ago
#39 - Refactor unmated resolution and allow streaming results
Pull Request -
State: closed - Opened by cmdcolin about 5 years ago
- 1 comment
#38 - Investigate split alignment data structures
Issue -
State: closed - Opened by cmdcolin about 5 years ago
- 1 comment
#37 - Bump eslint-utils from 1.4.0 to 1.4.2
Pull Request -
State: closed - Opened by dependabot[bot] about 5 years ago
- 2 comments
Labels: dependencies
#36 - Add failing test case and fix for incorrect chunk merges
Pull Request -
State: closed - Opened by cmdcolin over 5 years ago
- 3 comments
#35 - Add block merging from tabix-js
Pull Request -
State: closed - Opened by cmdcolin over 5 years ago
- 1 comment
#34 - Port intra-slice merging from tabix
Issue -
State: closed - Opened by cmdcolin over 5 years ago
- 1 comment
#33 - Bump lodash from 4.17.11 to 4.17.14
Pull Request -
State: closed - Opened by dependabot[bot] over 5 years ago
- 2 comments
Labels: dependencies
#32 - Bump lodash.template from 4.4.0 to 4.5.0
Pull Request -
State: closed - Opened by dependabot[bot] over 5 years ago
- 2 comments
Labels: dependencies
#31 - error with local uploaded file
Issue -
State: closed - Opened by lidaof over 5 years ago
- 4 comments
#30 - Bgzf unpacking
Pull Request -
State: closed - Opened by cmdcolin over 5 years ago
- 1 comment
#29 - Merge adjacent blocks code could result in large allocation
Issue -
State: closed - Opened by cmdcolin over 5 years ago
- 2 comments
#28 - Support AN (alternative naming)
Issue -
State: open - Opened by cmdcolin over 5 years ago
#27 - question on seq_id of returned feature
Issue -
State: closed - Opened by lidaof over 5 years ago
- 2 comments
#26 - error in getHeader()
Issue -
State: closed - Opened by lidaof over 5 years ago
- 7 comments
#25 - use with ES6
Issue -
State: closed - Opened by lidaof over 5 years ago
- 1 comment
#24 - More aborting
Pull Request -
State: closed - Opened by rbuels over 5 years ago
- 3 comments
#23 - expand README
Issue -
State: open - Opened by rbuels over 5 years ago
- 2 comments
#22 - factor out an indexFile base class from bai.js and csi.js
Pull Request -
State: closed - Opened by rbuels over 5 years ago
- 3 comments
#21 - aborting support
Pull Request -
State: closed - Opened by rbuels over 5 years ago
- 5 comments
#20 - Indexcov
Pull Request -
State: closed - Opened by cmdcolin over 5 years ago
- 3 comments
#19 - Add indexCov
Issue -
State: closed - Opened by cmdcolin over 5 years ago
- 1 comment
#18 - Add check for incorrect BAI files for larger chromosomes
Issue -
State: closed - Opened by cmdcolin over 5 years ago
- 1 comment
#17 - Babel runtime
Pull Request -
State: closed - Opened by garrettjstevens over 5 years ago
- 2 comments
#16 - Update eslint-config-prettier to the latest version 🚀
Pull Request -
State: closed - Opened by greenkeeper[bot] over 5 years ago
- 1 comment
Labels: greenkeeper
#15 - Update eslint-plugin-flowtype-errors to the latest version 🚀
Pull Request -
State: closed - Opened by greenkeeper[bot] over 5 years ago
- 1 comment
Labels: greenkeeper
#14 - Rewrite record class for less lazy loading
Issue -
State: closed - Opened by cmdcolin almost 6 years ago
- 2 comments
#13 - Update dependencies to enable Greenkeeper 🌴
Pull Request -
State: closed - Opened by greenkeeper[bot] almost 6 years ago
- 1 comment
Labels: greenkeeper
#12 - Optimize some view as pairs circumstances
Issue -
State: closed - Opened by cmdcolin almost 6 years ago
#11 - Fix for ie11
Pull Request -
State: closed - Opened by cmdcolin about 6 years ago
#10 - add a configurable flag to redispatch and really connect read pairs
Issue -
State: closed - Opened by rbuels about 6 years ago
- 10 comments
#9 - Use @gmod/tabix techniques to decode bgzf blocks
Issue -
State: closed - Opened by cmdcolin about 6 years ago
- 2 comments
#8 - Add more hydrate / snapshot tests
Issue -
State: closed - Opened by cmdcolin about 6 years ago
- 1 comment
#7 - Avoid large promise.all at end of getRecordsForRange
Issue -
State: closed - Opened by cmdcolin about 6 years ago
- 3 comments
#6 - CG field
Issue -
State: closed - Opened by cmdcolin about 6 years ago