Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / FoxoTech/methylcheck issues and pull requests

#82 - Pandas ~2 removed `DataFrame.append()`

Issue - State: open - Opened by xinaesthete 9 months ago

#81 - Bump pygments from 2.11.2 to 2.15.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#80 - Bump jupyter-core from 4.9.1 to 4.11.2

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#79 - Bump scipy from 1.8.0 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#78 - Bump joblib from 1.1.0 to 1.2.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#77 - Bump tornado from 6.1 to 6.3.2

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#76 - Bump requests from 2.27.1 to 2.31.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#75 - [Snyk] Security upgrade tornado from 6.2 to 6.3.2

Pull Request - State: open - Opened by snyk-bot over 1 year ago

#74 - Bump joblib from 1.1.0 to 1.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#73 - Bump ipython from 8.0.1 to 8.10.0

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#72 - Bump certifi from 2021.10.8 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#71 - Bump pillow from 9.0.1 to 9.3.0

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#70 - Bump nbconvert from 6.4.1 to 6.5.1

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#69 - Bump mistune from 0.8.4 to 2.0.3

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#68 - Feature/v0.8.5 - parquet support

Pull Request - State: closed - Opened by marcmaxson over 2 years ago - 1 comment

#67 - Unable to get GCT scores in excel output.

Issue - State: open - Opened by notmaurox over 2 years ago

#66 - Feature/v0.8.4

Pull Request - State: closed - Opened by marcmaxson almost 3 years ago - 1 comment

#65 - uses SampleSheet() in _fetch_sex and bead_array to suport legacy samp…

Pull Request - State: closed - Opened by marcmaxson almost 3 years ago

#64 - Feature/v0.7.9 docs

Pull Request - State: closed - Opened by marcmaxson almost 3 years ago

#63 - Feature/v0.8.1

Pull Request - State: closed - Opened by marcmaxson almost 3 years ago

#62 - Feature/v0.7.9

Pull Request - State: closed - Opened by marcmaxson about 3 years ago

#61 - Reinstall new version of methylcheck, file not found error

Issue - State: open - Opened by viabard about 3 years ago - 1 comment

#60 - Feature/v0.7.7 - unlocked pandas version to support 1.3+

Pull Request - State: closed - Opened by marcmaxson about 3 years ago

#58 - Feature/v0.7.6

Pull Request - State: closed - Opened by marcmaxson about 3 years ago

#57 - Feature/v0.7.6

Pull Request - State: closed - Opened by marcmaxson about 3 years ago

#56 - Feature v.0.7.5 docs

Pull Request - State: closed - Opened by marcmaxson about 3 years ago

#55 - Feature v.0.7.5 docs

Pull Request - State: closed - Opened by marcmaxson about 3 years ago

#54 - Bump pillow from 8.2.0 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#53 - Feature/v0.7.5

Pull Request - State: closed - Opened by marcmaxson about 3 years ago

#52 - `qc_signal_intensity` plot merge (line 182) fails on pandas v1.3.0+

Issue - State: open - Opened by marcmaxson about 3 years ago - 1 comment
Labels: Type: Bug

#51 - Bump urllib3 from 1.26.4 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#50 - Feature/v0.7.3

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#49 - Feature/v0.7.2

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#48 - Feature/v0.7.2

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#47 - Feature/v0.7.2 fixed unit test version conflict bugs

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#46 - Feature/v0.7.1

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#45 - Feature/v0.7.1

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#44 - Feature/v0.7.1

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#43 - Feature/v0.7.1

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#42 - Feature/v0.7.1

Pull Request - State: closed - Opened by marcmaxson over 3 years ago

#41 - Bump pygments from 2.7.1 to 2.7.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#40 - Bump jinja2 from 2.11.2 to 2.11.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#39 - Bump pillow from 7.2.0 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#38 - Feature/mouse

Pull Request - State: closed - Opened by marcmaxson almost 4 years ago

#37 - Feature/mouse

Pull Request - State: closed - Opened by marcmaxson almost 4 years ago

#36 - v0.6.4

Pull Request - State: closed - Opened by marcmaxson about 4 years ago

#35 - v0.6.2

Pull Request - State: closed - Opened by marcmaxson about 4 years ago

#34 - v0.6.1 improved beta_density_plot

Pull Request - State: closed - Opened by marcmaxson over 4 years ago

#33 - read_geo improved

Pull Request - State: closed - Opened by marcmaxson over 4 years ago

#32 - v0.5.9 working feature/mds embedded

Pull Request - State: closed - Opened by marcmaxson over 4 years ago

#31 - v0.5.5 Invalid string grayscale value '-99' error in run_qc, pdf.savefig

Issue - State: closed - Opened by marcmaxson over 4 years ago - 4 comments
Labels: Type: Bug, Status: In Progress, Estimate: 1 Day, Priority: Immediate

#30 - methylprep -all - batch-size memory does not clear between batches

Issue - State: closed - Opened by moranr7 over 4 years ago - 2 comments

#29 - run_qc - failures

Issue - State: closed - Opened by moranr7 over 4 years ago - 1 comment
Labels: Type: Bug, Priority: Short-term, Estimate: 1 Week

#28 - v0.5 (report pdf)

Pull Request - State: closed - Opened by marcmaxson over 4 years ago - 1 comment

#27 - v0.4.0

Pull Request - State: closed - Opened by marcmaxson over 4 years ago

#26 - give reasons why a probe was excluded

Issue - State: open - Opened by jmschrei almost 5 years ago
Labels: Type: Enhancement, Priority: Long-term, Estimate: 1 Week, Focus: R & D

#25 - passing in transposed dataframe causes kernel to crash

Issue - State: closed - Opened by jmschrei almost 5 years ago - 2 comments
Labels: Status: In Progress, Estimate: 1 Day, Priority: Immediate

#24 - fixed bug

Pull Request - State: closed - Opened by marcmaxson about 5 years ago

#23 - improved feature/color groups v.2.4

Pull Request - State: closed - Opened by marcmaxson about 5 years ago

#22 - update probe exclusion list (996 new probes deemed sketchy by Illumina, Sep '19)

Issue - State: closed - Opened by marcmaxson about 5 years ago - 1 comment
Labels: Type: Maintenance, Priority: Short-term, Estimate: 1 Day

#21 - Renamed repo

Pull Request - State: closed - Opened by marcmaxson about 5 years ago

#20 - 0.2.4 minor fixes (exclude_probes, combine_mds)

Pull Request - State: closed - Opened by marcmaxson about 5 years ago

#19 - Dev

Pull Request - State: closed - Opened by marcmaxson over 5 years ago

#18 - improved MDS plots

Pull Request - State: closed - Opened by marcmaxson over 5 years ago

#17 - CircleCI and coveralls.io fix

Pull Request - State: closed - Opened by marcmaxson over 5 years ago

#16 - Completely refactored code; added CLI and unit testing

Pull Request - State: closed - Opened by marcmaxson over 5 years ago

#15 - Integrations: circleci, appveyor

Pull Request - State: closed - Opened by marcmaxson over 5 years ago

#14 - Refactored code. +CLI. Methpype integration.

Pull Request - State: closed - Opened by marcmaxson over 5 years ago

#13 - Remove files from commit history

Issue - State: closed - Opened by nhrigby over 5 years ago - 2 comments

#12 - Automated QC prototype

Issue - State: closed - Opened by rhiever over 5 years ago - 3 comments
Labels: Priority: Long-term, Focus: Services, Estimate: 1 Week

#11 - Add function for M vs U plot

Issue - State: closed - Opened by nhrigby over 5 years ago - 2 comments
Labels: Status: Ready, Type: Maintenance, Focus: Services, Estimate: 1 Day, Priority: Immediate

#10 - Review 'minfi' functions for QC

Issue - State: closed - Opened by brianchengithub about 6 years ago - 2 comments
Labels: Type: Question, Type: Enhancement, Priority: Long-term, Estimate: 1+ Weeks

#9 - Mirror Genome Studio QC functionality for raw data

Issue - State: closed - Opened by nhrigby about 6 years ago - 2 comments

#8 - Age estimation

Issue - State: closed - Opened by brianchengithub about 6 years ago - 3 comments

#7 - Cross-reactive and polymorphic probes

Issue - State: closed - Opened by brianchengithub about 6 years ago - 10 comments

#6 - QC: Use detection p-values for probes to determine sample and probe failures

Issue - State: closed - Opened by brianchengithub about 6 years ago - 3 comments
Labels: Type: Enhancement, Priority: Short-term, Status: In Progress, Estimate: 1 Week

#5 - Cell count estimation

Issue - State: open - Opened by brianchengithub about 6 years ago - 2 comments
Labels: Priority: Long-term, Estimate: 1 Week, Focus: QC

#4 - SVA and ComBat

Issue - State: open - Opened by brianchengithub about 6 years ago - 2 comments
Labels: Priority: Distant Future, Estimate: 1+ Weeks, Status: In Review, Focus: QC

#3 - BMIQ normalization

Issue - State: closed - Opened by brianchengithub about 6 years ago

#2 - DASEN normalization

Issue - State: closed - Opened by brianchengithub about 6 years ago

#1 - Need to be able to identify probes with low variation

Issue - State: open - Opened by nhrigby about 6 years ago - 2 comments
Labels: Priority: Long-term, Estimate: 1 Day